G116180 (vim,LOC107098299)


Basic Information

Item Value
gene id G116180
gene name vim,LOC107098299
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19639526 ~ 19640657 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU156632
ctttgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatctatAGTTCACAACATGAATTGTACTGTACCTGTCTGAAGCTGTGCAGGCTGCCCTCAGCCTCCTCCCGCTGGCATATCTCATCCTGCAACTTCTCTCTCAGCCTGTCTATGTCGTCTGCAAGGTTATCCCGGTGAACTTCAACCCGGGCCTTCTCGTTGCTGAGCTGGTCCACCTGGCGCCTCAGCTCCCGCATCTCGTCCTCGTACAGATCTCCGACCCGGGACGTGCCTTTGCCCCGCAGCTGCTCCAGCTCCGCCAGCAGAATCTTGTTCTGCTGCTCCAAGAAGCGGACCTTATCGATGTAGTTGGCGAAGCGGTCGTTGAGCGACTGCATCTGAGCTTTCTCGTTGGTGCGGTTCGTCATGAACTCGCTGTTTATGGCGTCGGACAAGGAGAAGTCCAAGTTCTCGGAGGCCAGCCGGGGCATGGCTGCGCTGCTCCGGAGCCTTTGGGTCTtcgcggaggaggaggagagaccgTAGGATACCCGGGAGGAGCGCACCGGGCTGGAGTACTGGCGGCTGGAGTAGCTGATCCTGGTCGAGACTCTCTCCCCGCCAAACATCTTCTTGTAAGAAGACTGTGGAGCTGTTCTATAAGACATCTTGCTGGTATTTTTTTTCAGACAGTAGCTCGGTGTTGCTCGTGTCCCGACTGCATCAACGGAGT

Function

symbol description
vim Acts upstream of or within wound healing. Predicted to be located in intermediate filament. Is expressed in several structures, including axis; integument; midbrain neural keel; nervous system; and neural tube. Human ortholog(s) of this gene implicated in atherosclerosis; autoimmune disease (multiple); and cataract 30. Orthologous to human VIM (vimentin).

NR:

description
vimentin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156632 True 760 lncRNA 0.56 2 19639526 19640657

Neighbor

gene id symbol gene type direction distance location
tcea1 tcea1 coding downstream 38054 19593467 ~ 19601472 (-)
atp6v1h atp6v1h coding downstream 66239 19542850 ~ 19573287 (-)
oprk1 LOC104917759,LOC105937811,LOC103479830,LOC108232774 coding downstream 107296 19528163 ~ 19532230 (-)
chmp5a chmp5,LOC103361429,LOC101475708 coding downstream 115044 19519536 ~ 19524482 (-)
bag1 bag1,LOC102796959 coding downstream 122952 19513543 ~ 19516574 (-)
LOC120567744 NA coding upstream 148968 19789625 ~ 19791903 (-)
LOC120567779 LOC101467836,LOC102791796,LOC104956506 coding upstream 242245 19882902 ~ 19916863 (-)
LOC120567774 LOC104956512 coding upstream 306583 19947240 ~ 19956332 (-)
ftr67 LOC104956513 coding upstream 316123 19956780 ~ 19962763 (-)
LOC120567785 LOC103359745,LOC104917727,LOC103396371,LOC104956511,LOC102292405 coding upstream 323169 19963826 ~ 19967558 (-)
LOC120568771 NA non-coding downstream 6654 19631497 ~ 19632872 (-)
G116182 NA non-coding downstream 22106 19606665 ~ 19617420 (-)
G116091 NA non-coding downstream 229250 19410049 ~ 19410276 (-)
G116082 NA non-coding downstream 415446 19223828 ~ 19224080 (-)
G116085 NA non-coding downstream 416037 19223263 ~ 19223489 (-)
G116181 NA non-coding upstream 4665 19645322 ~ 19648123 (-)
G116268 NA non-coding upstream 38532 19679189 ~ 19679430 (-)
G116274 NA non-coding upstream 105045 19745702 ~ 19752194 (-)
G116293 NA non-coding upstream 239248 19879905 ~ 19882409 (-)
G116292 LOC107655868,LOC106532782,LOC108241678 non-coding upstream 283555 19924212 ~ 19937413 (-)
G116138 NA other downstream 174146 19464700 ~ 19465380 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other downstream 416800 19221791 ~ 19222726 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other downstream 704035 18931974 ~ 18935491 (-)
G115941 NA other downstream 793249 18844905 ~ 18846277 (-)
LOC120568909 LOC103353029,LOC104955147,LOC101484702,LOC102780695 other downstream 918939 18703064 ~ 18720587 (-)
xcr1b.1 NA other upstream 152685 19793342 ~ 19795759 (-)
tmie tmie,LOC102776014 other upstream 1344144 20984801 ~ 20995567 (-)
higd1a higd1a other upstream 1367391 21008048 ~ 21010576 (-)
G116969 NA other upstream 2621341 22261998 ~ 22268559 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 3705061 23345718 ~ 23361580 (-)

Expression


Co-expression Network