G116215


Basic Information

Item Value
gene id G116215
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19884595 ~ 19885699 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU156671
CTGCAAGCAGTTTATCGTTGCTAACTTCTTTGTGATTTGTCCTAATTTAGTCTTTAAGTCTGGTCTTTGTGTTCTGCTCCCTCTCTATTGTTTTATACCTGAAAGGATCCCAGCCCCAGCTCGATGTAGAGTCTGGCTGCTACTCCAGTGTTCTCAGGCAGGAAGGCGAATACTGTGTAGTGCATCCCAAACAGAGGGATGAGGAACAGGGTGGATTTAGCCAGCCTCCTGAGAGAAACAAATCAAGAGgagtgaaagaaagaagaaagacatCAGTCCAGATTTGTTTGCTAATGTGTGGAGTGGTGGCCTAGTGGTGAAAGAAGCGAGCTTGGGACCGGGAGGTTGCCATTTCACTCCCCACCGACAGAATAAAATCTGGATGGGAAAgcgaaagagcagcgcttgtccctccctcatcaccaccactgaggttcccttgagcaaggcctttAACCCCAACTGCACCAGTGGAGCTGcacagtggccagcagatcagactgtggttgtactgggcagcttccacgtaggaatgtggaactgtgtgaatgtgacaggttgttgttgcaaatgagaaattgttctcaatctatttacctggataaataaaggttaaataaatgtCGCCTTGCCATTGTCAATCAACTCAGATGCTAAAGCAAATTAGCTGAGTGTTTCAGTCTTAGACTCCTTTCACTTTGACTTCAATTGTTGCTTCTTaatcagaggtgtatagtccaggtgccagaaagtagaaatcctgtccagcagctgtcccaaccatcactaaaccagctcctctaccaggtagatgagctcgttagtgaaaacacctgttctagatgtagaggcagatccaaaaacatggcaggatttttactttct

Function

GO:

id name namespace
GO:0009186 deoxyribonucleoside diphosphate metabolic process biological_process

KEGG:

id description
ko04115 p53 signaling pathway
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
TU156671 True 885 lncRNA 0.46 2 19884595 19885699

Neighbor

gene id symbol gene type direction distance location
LOC120567775 adcyap1r1,LOC103396405,LOC102193585,LOC100710985,LOC104917732 coding upstream 2167 19854988 ~ 19882428 (+)
LOC120567771 NA coding upstream 57623 19802991 ~ 19826972 (+)
neurod6b neurod6,LOC102793566,LOC102311402,LOC101472195 coding upstream 112431 19769289 ~ 19772164 (+)
pde1cb pde1c,LOC108232872,LOC103135697,LOC103479836,LOC102794047,LOC100712431,LOC103361422 coding upstream 132962 19648419 ~ 19751633 (+)
LOC120568742 vim coding upstream 238071 19639508 ~ 19646524 (+)
eef1da LOC106532782,LOC101466496,LOC102194655,LOC102290633,LOC103361414 coding downstream 35616 19921315 ~ 19947470 (+)
zgc:113531 LOC104917724,LOC100692768,LOC101464837,LOC104948902,LOC102196942 coding downstream 134649 20020348 ~ 20024640 (+)
kiss1ra gpr54,LOC102788056,LOC101463985,LOC104942405 coding downstream 351105 20236804 ~ 20252137 (+)
LOC120568950 atp5l,LOC108233819 coding downstream 448662 20334361 ~ 20336124 (+)
LOC120568873 NA coding downstream 453804 20339503 ~ 20347484 (+)
G116214 NA non-coding upstream 11546 19872633 ~ 19873049 (+)
LOC120567786 NA non-coding upstream 43791 19836814 ~ 19840804 (+)
G116204 NA non-coding upstream 50222 19833123 ~ 19834373 (+)
G116200 NA non-coding upstream 130147 19752493 ~ 19754448 (+)
G116175 NA non-coding upstream 246183 19638170 ~ 19638412 (+)
G116216 NA non-coding downstream 16544 19902243 ~ 19902819 (+)
LOC120567788 NA non-coding downstream 316426 20202125 ~ 20203738 (+)
G116322 NA non-coding downstream 429189 20314888 ~ 20315271 (+)
G116327 NA non-coding downstream 436589 20322288 ~ 20322541 (+)
LOC120567944 NA non-coding downstream 762906 20648605 ~ 20654150 (+)
emilin2a NA other upstream 419214 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 832353 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 1159148 18720365 ~ 18725447 (+)
LOC120568691 NA other upstream 1210455 18660429 ~ 18674140 (+)
skila skil,LOC102782637 other upstream 1282332 18566633 ~ 18602263 (+)
LOC120567833 gbg5 other downstream 487528 20373227 ~ 20375633 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other downstream 996918 20882617 ~ 20915322 (+)
LOC120568354 NA other downstream 1985254 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 2722350 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 2755811 22641510 ~ 22681293 (+)

Expression


Co-expression Network