G116292 (LOC107655868,LOC106532782,LOC108241678)


Basic Information

Item Value
gene id G116292
gene name LOC107655868,LOC106532782,LOC108241678
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19924212 ~ 19937413 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU156782
CTCAAGGTAAGAGAAAAACATGTTATTATAAGGGTGAACAAATTACATCAGAGTGGTTGTTACTTACATAGTCCTCAAACTTGGTGATCTCCTCCTCCAGAATGTCAGTGCCAACTTTGTCATCCTCAACCACGCAGTTGATCTGCAGCTTCTTGATGCCGTAGCCAACTGGCACCAGTTTGGATGCTCCCCACAGGAGCCCGTCCATCTGCACCGAGCGCACACACTCCTCCAGTTTCACCATATCAGTCTCATCACTGCCGAACAAGTCAATGTCATCGTCATCACCGCTTTGTGCAGAGTTTGGTTCTCCAGTTCCATGCTCTTCATGCGCGAAACCAGCTCCTGGTCTCCTGCATGCGAGGATGACTGTGTAGAGGGTCCATTGGCTCCTTCGTAGAAGCACTTCTCCGCCTCATCGTAGCGTTGTTTGTCAAACCAGATGTTCTCTGAGGCGAGGCACTGCAATCCACTCATGTTGGTACTGAGGGGGGAAGTcagtaaataatttatttaatatagcaccttttacagaaGAAAGTCACAAGAGTAAAATGTGTTAAAAGACCAAACaatgaatagaaataaaaaccgtaaaataaaaacaaacatgagaCAAAGGCCATTTTGAATAGGTAAGTTTTCAGCTGATTTCAACAGTGCCGAAGCCACCTAGGTTTATAAATAAGATACTGCAAAAAACATTGATCTGCATCCAAGAGTTTATCTACTAACCAACAGCCATGACCAGGCGTTTAGTCGTCACAGCCAACACAATCAGTAACAAGAAATGAGTGAAAGAACATTACTAGACGCTTGACAAGGACACCGTATATTACATGTTACAATATCATGCAGAGCCACAGACTGAGTTGCAGGTGAAATAGGGAGACACAAAACAAAGCGTAACGCAGACAGTTTCAACTATATACACAGTAAATGAATGGCAGAATAACAGTTTCtgtcaaataaaaagaaacattaaaacaaacgtGTAAAAAAACTACTGCATATATGCTTCACCTCCCTTCTCATTCTGCTGACATGTTAGCGCAGCAGACAAGCATCTACACATTCCTCAGTCAGTGAAACACAGTTGCCTGGTCTGCAAAGTCTGGATTATAGAACAAAAGGTTGGTCGCTGACCATTCAACACCCCCCTTAGTGATAGCAGAGGTGCACTTCATTGTGCGATTATCAAAGAGACCCAGTTTACTGTAACATGTCAGTAAACGATGGCATGGTGTACACTAATACTCCGGTGACACAAGGTCagacttgtgttaaaaaatgcaAGGGGCTGCATTGATGCAGGCGTAGATAAGACAAATTAAAGGCTTGTCAGATGCCATGACACTGCAGACCACTTTATAATACTCCACGACAGGACTTTGACACTGGAAAGTTATCACTGTGAAATATTTTTATCTTTAGTCACAATGATCACAAGATAAATAGTAGAAATACAGCAATAACATTACAAACAATCAACTGGCCACTGCAGCGCCTTGCGAGGATGTTTCATTGCGGCAAAAGTTGAGTGAGGTTTTGCTGAAGCCCTGTGTTGGCACCCCTGCTGAGTCAATGAATTGACCTCGtttaaatgataaataaaagattgtgcttttattttctcGAGTGCTTAAATTTGTCCAAATGTGGCctaaacaaaaaaactccaGAAAGGCTCATCTAAAaacttgcatttaaaaaaatattatacacATTGGCTCatttacaagcccatcaaagATAACAAAATAAGTGAAAGTTAAATCATTTTCTTTCATAGCTTTTACGTACTACTTTTGACCACATTTTAATAACTgatcaaaagaaaacaaaatatagGGGTGTCATTATTAAGCCTGGGCTACATTAGCATAACTGAAAAAGGCCACACAGAATGCATGAcgaacaaaataaacaaaaaacataaacgttaaataaaccaaaaacacacatcacGTCTCTGCCATTCCCTGTGTGAGATGTGCCATACTTCTCCCATCTGGGCTTGCTTTTCGTCTCAGAGAGGCCCCTCTTCCTCTGGGTCGGCCCCTTGCTGCCCTTGCCCCCCTGCTCGGTCTCCGAGGAGGTGCGGTTGCGTCCTCTACTGTATCGACGGTGGGGGGTTCCAGAGGCCTTCACGGTGGTGACAGGGTGCCCCGGATCCTGCTGTTGAGCAAGGCTGCGTCTAGACTGGAAGGTCATGTAGCCTCTGGTGTTTGGACTCCTCGGAGAGGAGGACAGCGGCCCGTTGCCATTAGAGGCGAGCCGCTGTTGGTAGTTGCTCTCGGCCTGCTCATAGGCGCTGCGATTGTACAAGATTCCCTCTGCCTGCATGCCCTGGAGGACGGGGCTTTGACCGTAGGAGCCGCTCGCTTCCCTGGAGGTGCTCAACCACTCCTCTTCAGCCCCAAAGCTGTGGCTCTCCGACAAACGTGTGCGTCGCGGCAGCCTCCCAAATGGGACTTTATCTCCGCTGATAGTGCTTCTCTCTAGAGTGGGATTATTACCCTGCCTGAAGGTCCCCACTGGTACAGCATGCTGAGGGGCTCCTCCTTGTTGACGGTTTGACCAAGACTGATCCATTTCTCTATTAAAGGAGTCTCTTTTCTACT

Function

NR:

description
PREDICTED: elongation factor 1-delta-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156782 True 2624 lncRNA 0.45 4 19924212 19937413

Neighbor

gene id symbol gene type direction distance location
LOC120567779 LOC101467836,LOC102791796,LOC104956506 coding downstream 7349 19882902 ~ 19916863 (-)
LOC120567744 NA coding downstream 132309 19789625 ~ 19791903 (-)
tcea1 tcea1 coding downstream 322740 19593467 ~ 19601472 (-)
atp6v1h atp6v1h coding downstream 350925 19542850 ~ 19573287 (-)
oprk1 LOC104917759,LOC105937811,LOC103479830,LOC108232774 coding downstream 391982 19528163 ~ 19532230 (-)
LOC120567774 LOC104956512 coding upstream 9827 19947240 ~ 19956332 (-)
ftr67 LOC104956513 coding upstream 19367 19956780 ~ 19962763 (-)
LOC120567785 LOC103359745,LOC104917727,LOC103396371,LOC104956511,LOC102292405 coding upstream 26413 19963826 ~ 19967558 (-)
LOC120567783 LOC102292715,LOC100691961,LOC101465604,LOC102195716 coding upstream 31003 19968416 ~ 19970892 (-)
LOC120567772 NA coding upstream 34077 19971490 ~ 19993721 (-)
G116293 NA non-coding downstream 41803 19879905 ~ 19882409 (-)
G116274 NA non-coding downstream 172018 19745702 ~ 19752194 (-)
G116268 NA non-coding downstream 244782 19679189 ~ 19679430 (-)
G116181 NA non-coding downstream 276089 19645322 ~ 19648123 (-)
G116180 vim,LOC107098299 non-coding downstream 283555 19639526 ~ 19640657 (-)
G116328 NA non-coding upstream 388236 20325649 ~ 20325874 (-)
G116366 NA non-coding upstream 450085 20387498 ~ 20388062 (-)
G116368 LOC101078271 non-coding upstream 452944 20390357 ~ 20391720 (-)
LOC120568747 NA non-coding upstream 643107 20580520 ~ 20585677 (-)
G116484 rock1 non-coding upstream 831222 20768635 ~ 20771028 (-)
xcr1b.1 NA other downstream 128453 19793342 ~ 19795759 (-)
G116138 NA other downstream 458832 19464700 ~ 19465380 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other downstream 701486 19221791 ~ 19222726 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other downstream 988721 18931974 ~ 18935491 (-)
G115941 NA other downstream 1077935 18844905 ~ 18846277 (-)
tmie tmie,LOC102776014 other upstream 1047388 20984801 ~ 20995567 (-)
higd1a higd1a other upstream 1070635 21008048 ~ 21010576 (-)
G116969 NA other upstream 2324585 22261998 ~ 22268559 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 3408305 23345718 ~ 23361580 (-)
G117259 vps4b other upstream 3492953 23430366 ~ 23430992 (-)

Expression


Co-expression Network