G116507



Basic Information


Item Value
gene id G116507
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 20827876 ~ 20828235 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>TU157029
CCGCAGCTCTATGTAGCGAAACTGCAGCTTAccggtggcgcatctctcctgacgagacaacatgtcggaactagtactcggtcccgtttatagcccgtgctcattcatttctggattctaacacatcgtcttttttctcttttgggatcttactggtccatgtttaaactcttgactggcccgtaggcctacttcaatcaggtaagtccctcctagagtagcgccgcctgctcttatggagacgtattacgtttctcagccgccacatgaagtaaacaaacacagctgcgttaattttttttaacgagttaaatattaaaaaattaacgcaaatattaacgcgttaattttgacagccct

Function


GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005507 copper ion binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04979 Cholesterol metabolism
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA


RNA id representative length rna type GC content exon number start site end site
TU157029 True 360 lncRNA 0.44 1 20827876 20828235

Neighbor


gene id symbol gene type direction distance location
usp14 usp14,LOC102778130 coding upstream 35377 20782255 ~ 20792499 (+)
rock1 rock1 coding upstream 48131 20741261 ~ 20779745 (+)
abhd3 abhd3 coding upstream 138246 20677357 ~ 20689630 (+)
npc1 npc1 coding upstream 304337 20507410 ~ 20523539 (+)
egfra LOC103369338 coding upstream 323600 20461791 ~ 20504276 (+)
pth1r pth1r coding downstream 107200 20935435 ~ 20983609 (+)
LOC120567629 NA coding downstream 188667 21016902 ~ 21019325 (+)
gjc2 gjc2 coding downstream 198265 21026500 ~ 21045564 (+)
iba57 iba57 coding downstream 220119 21048354 ~ 21051342 (+)
snap47 snap47 coding downstream 225146 21053381 ~ 21059750 (+)
G116465 NA non-coding upstream 128667 20696904 ~ 20699209 (+)
G116464 NA non-coding upstream 131403 20693420 ~ 20696473 (+)
G116463 NA non-coding upstream 134735 20692887 ~ 20693141 (+)
G116461 NA non-coding upstream 135891 20691619 ~ 20691985 (+)
LOC120567944 NA non-coding upstream 173726 20648605 ~ 20654150 (+)
G116514 NA non-coding downstream 52457 20880692 ~ 20880996 (+)
G116529 NA non-coding downstream 120769 20949004 ~ 21028982 (+)
G116538 NA non-coding downstream 193396 21021631 ~ 21030496 (+)
G116583 wnt9a non-coding downstream 301373 21129608 ~ 21134012 (+)
G116616 NA non-coding downstream 415406 21243641 ~ 21244393 (+)
LOC120567833 gbg5 other upstream 452243 20373227 ~ 20375633 (+)
emilin2a NA other upstream 1362495 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 1775634 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 2102429 18720365 ~ 18725447 (+)
LOC120568691 NA other upstream 2153736 18660429 ~ 18674140 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other downstream 54382 20882617 ~ 20915322 (+)
LOC120568354 NA other downstream 1042718 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 1779814 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 1813275 22641510 ~ 22681293 (+)
kdsr kdsr,LOC102792240 other downstream 2605390 23433625 ~ 23440843 (+)

Expression



Co-expression Network