G116529


Basic Information

Item Value
gene id G116529
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 20949004 ~ 21028982 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU157060
attcatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagacaataaaataaaacacaatgaaaagaagaaataaattaTAAGTCTACCTGCGATTGgtggatattttttttaatctaggCTTAGCCTAGTCTATCTGCtatatgttttagtttttaatatTTCACTCATACACCTTTTAAATAAGAGGCAACAAAACTCTGCCAGTCAAGTCACCTGTTCGAATAGATATCAAAGCAGCTGGGTTCACAGACGCAAACACAGAGAGTGCAACCAGTGTTAAAACAGCTGGAGCAATACACCTCCTCAGTACAGAAGAGATAACTTGACCCTCTGGTACGCTACTTAGAGGATAGGAAGTGTAATCAATAAGTTAACAGTAGATGTGAGCTTCTGAAGGGATGTGTGCATACAATAATTATGACACATCTAAAACTAAACTTCTACACACCTTAATATGAGGTAATATTAAGGGACATAAAATGTCAGTCCATGTTCATTTGTGTTGCACTGCTTTCTGTTCCTCTCTGGGTTTTACAATGTACTCTTTGTACATTGAATACAGGAC
>TU157061
tTCCAGAATTACATGACTGGTCATTTTTATTTCCAGAAAAAGAAACTTTAGAAAAAGGAACTGTATTTGTACACAACATTTAAAACTTAACTttgcaaaaaatttaaaaaggcaTCCATTTAAGCACATCACAAGCTATGGGTTACTGCACAGTCTGTAGGTGCACCTCAGTTAGTTTAGTCTCAGGAAGACTTGTGAAGCTTCTGTAATGAAACATCGGAGCCCtgcgtacaatatgtaacaatgattcaaatgaaaaaaagacttgGCCTTTACAATACATTTGTATAACGCCTACTGAAAGAAATCACACACTGTATTTCTATaacattttctctgttttttttttctttcattcccATGTGATTGCTTGATACTGTGGTGGGTCACACACCATTTGtgtcattgttttttaaataatgtgaaAGCACAGGCCTTGTCTTTAAACCACATGTTGTCAAAGCCTTCCAAAACACACACCTAATGCACTGGGAagccaatgaagaagaaaaaagtgggCTAAGGTGCAAACATTTTCCATTTAGCAAAAATCCCTACATTAGTACATCAAAAAATAtagcatatacacacatatacatacacacatatacatatacatatacatatatatgtatgtgtgtgtgtgtgtgtgtgtgtgttcgtgcgtgcgtgcgtgcttgcgtGCGCACACGTGCCAcgtcataacgataacaagcagtttggcagtaacattaaagttagtggctgtcaggtaacctaactgtttaagcttacattgaaaatgctggcgattagcctgttgggtagctgaaaagtctgtgggatctataaaatcagtgttgatacaagcatcagtgttccttgaatagcttaattagcttctcttgtattggtgctcttttccagggcatatactgtactactttcagctttattgtagcttttgggaagggttatagttatggttatagagagccaaagtcccgcccttctacttccggccaatgggacctatctttcgaaaaagtatgaactagagtcaatggagagatattaattattttttgatctcgtttgaattgagccatggattacaaatatgatgttcgtcaatttaaaacattatttttcaaccaaaGAAAGTCTCCGTTTATTGTtgaactgttgaagtataagactgtgaaaatacgtaattagaaagactacaaacttcatggatgacgtctcgctgaagctacgatgtctgtgtatCGTACcagggatgtaacgttactctaatgagcagaggatcttggttgttcttttgcttatctgctgaaaacacttcactggataaaacacagcagttacgataacgttacatgtgttgtttaacagagctaagctagctagctagcgagcaagccgatcatcaagctaggtgaggtagctagtgtgagacgggagatgtagttcactgaacggtttcacacaaaactaagtggtactatgacaaacctacggctaactgagactttcttcggttgaaaacttatcttttaaattgacgaacatcatatttgtaatccatggctcgattcaaacgggatcaaaaaacaatttgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157060 False 586 lncRNA 0.36 3 20949004 21009216
TU157061 True 1605 lncRNA 0.38 2 21008040 21028982

Neighbor

gene id symbol gene type direction distance location
usp14 usp14,LOC102778130 coding upstream 156505 20782255 ~ 20792499 (+)
rock1 rock1 coding upstream 169259 20741261 ~ 20779745 (+)
abhd3 abhd3 coding upstream 259374 20677357 ~ 20689630 (+)
npc1 npc1 coding upstream 425465 20507410 ~ 20523539 (+)
egfra LOC103369338 coding upstream 444728 20461791 ~ 20504276 (+)
iba57 iba57 coding downstream 19372 21048354 ~ 21051342 (+)
snap47 snap47 coding downstream 24399 21053381 ~ 21059750 (+)
wnt3a wnt3a coding downstream 134738 21163720 ~ 21178831 (+)
arf1 arf1 coding downstream 163316 21192298 ~ 21195757 (+)
guk1a guk1,LOC107100458 coding downstream 171735 21200717 ~ 21208684 (+)
G116514 NA non-coding upstream 68008 20880692 ~ 20880996 (+)
G116507 NA non-coding upstream 120769 20827876 ~ 20828235 (+)
G116465 NA non-coding upstream 249795 20696904 ~ 20699209 (+)
G116464 NA non-coding upstream 252531 20693420 ~ 20696473 (+)
G116463 NA non-coding upstream 255863 20692887 ~ 20693141 (+)
G116583 wnt9a non-coding downstream 100626 21129608 ~ 21134012 (+)
G116616 NA non-coding downstream 214659 21243641 ~ 21244393 (+)
G116657 NA non-coding downstream 241769 21270751 ~ 21326263 (+)
G116723 NA non-coding downstream 425348 21454330 ~ 21500394 (+)
G116746 NA non-coding downstream 585118 21614100 ~ 21662470 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 33682 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 573371 20373227 ~ 20375633 (+)
emilin2a NA other upstream 1483623 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 1896762 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 2223557 18720365 ~ 18725447 (+)
LOC120568354 NA other downstream 841971 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 1579067 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 1612528 22641510 ~ 22681293 (+)
kdsr kdsr,LOC102792240 other downstream 2404643 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 2563750 23592732 ~ 23685804 (+)

Expression


Co-expression Network