G116538


Basic Information

Item Value
gene id G116538
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21021631 ~ 21030496 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU157070
atctcaggaggcagaaggagacacggtttgtggccttctcgactttgtctgctaaaaagtcaacaatgtgagaaggttcaaactagtgaaactaaataattctactgggctatagttcacggttgccaactatttcacttggagccttttgaatctacacatgaagaagctaaatcttgtggcgttataaaacaatcattaaaccaatggttaatatcattaaacaaatggttaaaattaaATTTGCCACCACACCCCTTGAAGAGGGCAATGAGGATAAGCCCTGGATCATCCAAGGTAATTTCAAACAAACAATGCAAATGCATGATTTAGTGCCCTGTAAGTGTGTCATTTTACTCACAATGATGTGGTGTGATTACAGGTTCAGCGGCTCACCAGGCACTGACCGCCATCGTGCTGGACAAAAGGTGGTTGATCCAAGTGAAGAAGGTCATAAACTTCAGATAAGCATCTATAGTCAAAATTGTATTTGCCATATTTTAGCACTCAAGCATTTTTGTCTTAATTGTCTTATTTTACAAGAGCAGAATGGAAGTAGATTCATGTGGTGAGGAGTTCTTATTGTCTATCCCAACCACACAGGACCACATCAGACCTGGAAAGCTTCCAGAACCACTTATTAATGTATGCAGCAAAGCGCATGCCATATACTCCCTTTGTCTACAAGACCCGGACTTTGCTTGGAGCTATCGACAAACACAACCAACGACTGCCAGCACGCAATAGGGAGGGACACAAGATATAAGTTTTTACTGTTATATTTTTGTATAGTGAACACCTTGCTTGTGACTAATACTAATGGCTCTTCTTTTATCTCCAGGTACCGACGGTCATACAACAAAAAATCGAAGACTTGGGGTGTGTACacagtgaaagaaaagaaactatACTCCTACATCCCAGACATTCAGAGGGTCATTCTGTCCAGGAGGCTGAGAAGTGGGACTGGCCTTCCCCGCAAGATTTCACTTAGGCCTAACGACCCATGACGGCTGAGTCTTCTTGCTCTAGCACAACCACCACCCACATCCAAACTTGTACGAGCACATGTGGTCCCCTGCAATATAATACTATTGTCAAGACTAATAAACCTAGGCTTACTAGcaccaggcattacattttcaacattgtgaacaggtagattaaattatctatgagtctctggATCAAGGCGAGGCAAGCACTTCTTCCTCGTTTAATGGTGGGTACTGTGCTCCAAAACATAGGTGCTGATTGGCCAAAGAGGAGTCTTGTGTATCTGCGCCACTaaactctacctatcgatctgcgctcgattgctcttccttcatcctccaactacccggatgtctgtcaaagtaacttgaaattgaattttgagaactgaatctgaattgtgagaactgaatgtgaagatatatagagagctgaattttcagtgaggatcaaattttattggacttcagttacaaacgaataaattcaatttcaaattatactattcagattcagtttttcaatgcaatgattcaaattaaacaatacaatttcaaatgatatgattcaaattcagtttttcaatgcaataattaaagtttagcaattcaaattcaagtataaatgattcaaattcagtttctggtggcacatatttcagcccatacctCAGCGCCACAAGAAatagaggagagtgactaggcaaggtgtgatttctgtttgtttatttgttctgttttcctcaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157070 True 1743 lncRNA 0.40 2 21021631 21030496

Neighbor

gene id symbol gene type direction distance location
LOC120567629 NA coding upstream 2306 21016902 ~ 21019325 (+)
pth1r pth1r coding upstream 38022 20935435 ~ 20983609 (+)
usp14 usp14,LOC102778130 coding upstream 229132 20782255 ~ 20792499 (+)
rock1 rock1 coding upstream 241886 20741261 ~ 20779745 (+)
abhd3 abhd3 coding upstream 332001 20677357 ~ 20689630 (+)
iba57 iba57 coding downstream 17858 21048354 ~ 21051342 (+)
snap47 snap47 coding downstream 22885 21053381 ~ 21059750 (+)
wnt3a wnt3a coding downstream 133224 21163720 ~ 21178831 (+)
arf1 arf1 coding downstream 161802 21192298 ~ 21195757 (+)
guk1a guk1,LOC107100458 coding downstream 170221 21200717 ~ 21208684 (+)
G116514 NA non-coding upstream 140635 20880692 ~ 20880996 (+)
G116507 NA non-coding upstream 193396 20827876 ~ 20828235 (+)
G116465 NA non-coding upstream 322422 20696904 ~ 20699209 (+)
G116464 NA non-coding upstream 325158 20693420 ~ 20696473 (+)
G116463 NA non-coding upstream 328490 20692887 ~ 20693141 (+)
G116583 wnt9a non-coding downstream 99112 21129608 ~ 21134012 (+)
G116616 NA non-coding downstream 213145 21243641 ~ 21244393 (+)
G116657 NA non-coding downstream 240255 21270751 ~ 21326263 (+)
G116723 NA non-coding downstream 423834 21454330 ~ 21500394 (+)
G116746 NA non-coding downstream 583604 21614100 ~ 21662470 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 106309 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 645998 20373227 ~ 20375633 (+)
emilin2a NA other upstream 1556250 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 1969389 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 2296184 18720365 ~ 18725447 (+)
LOC120568354 NA other downstream 840457 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 1577553 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 1611014 22641510 ~ 22681293 (+)
kdsr kdsr,LOC102792240 other downstream 2403129 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 2562236 23592732 ~ 23685804 (+)

Expression


Co-expression Network