tmie (tmie,LOC102776014)


Basic Information

Item Value
gene id tmie
gene name tmie,LOC102776014
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 20984801 ~ 20995567 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU157105
GAGCAGTTTTGAGCTGCCTGCAGTGTGTATTTTGGTGTTTCTGCAGAGTTGTGGGAGAAAGGCAAGAGATAGAGGAGCAGAGCAGCAGACAACTGTGGATGGAAGGAAGCCGTCAGCACCATAGTCACCATTAATCACCCAGGGCCATTGTGGTCCTGTCCTCTATACGGCGCCagtgcaggcaggcaggcagacagagagaaagaagaatagaggaagagggagagaatGGTTGGGGATCAGCCTGTATGTCCACCTCAGCACCTACTGCAGGGCTGGGGAGCAGTGTTGCTGTCTCAGTGCTTGTCCTCCGTGTTCTCCCAGGTTCCGGATCCTGAGCTCTTGCCCACAGATCCCCCAAAGAAGCCGGACCCcatcacctcagagtcagttgtTTTCTGGGGGCTGCGGTTATGGCAGGTCATCGCCATCTTTTCTGTGTTTATTTTAGCAATTGAATCCCGAGAACCAAGAAGGAAATAGAGGCACGGCACATGCAAAGACAGGCCGCCAAGAAATACGCCAACACATTAGAAACAGTGCCACCTCTGAATGAGCTGACTGAGGTCCCAGGCTCTGCCCCAGATGCTTCTGCAGTGCAGACAGTCTCCGAGCATGTCCACACTCAAAGTGCTAACAACAGACAGCCTTCAGTAGTTAGGGTCAGCGAGGAGCAACCCAGCTCCCTCACCTTGCCAGAGACGGGCTGATTTTCACCCTTCCGTTTCTTCTGCTCTCAACGTCTTTCAGACTCTCCTCTTGCCTATGTGACTTTGAAATACACAGTGCATATACACTGGTAGCCACGCTAAAAGTCCTCTTCATTCAACACCCATCAAGCTGGTCTTCCTTAATGCTATTGATAAAAGAGAACTTCAAGAAAATACAAATGCATCTCTCATTTAACTGCTTACCACATCACCTTTGAAAGGTAAAGCCAGAAAATAGATTACACTAATCCAATGTTGCTTTGTGGTGAAGTTATAGTGTAGCAGTAaatgtgcagtagaaaataagACTTTTACTGTTGCCACGATATACAGATTGTAATGCTTTTGCAAATTTGATTACCTTAAGGCAGCTAGACTTTTTGCAGTTTATACTATTTGTATTTTTTCAggttctctttcttttctttagaTGTTTTTTAATAGATTCAATTTTGTTTCATGCATATTTGCATGAGAATGTCAAGAGCCTTTGACTTTGATAAATTTGAGTAAATTATGAAACATAAAATTGCTATTTCTGTAAGCTGTGAAAAAGGTAATGCATGCAGCATGCTGTTTGtgctctgtttgtctgttcCCCTGCCTGTTTGCTCTCCTAAGGTTAGCTCTGGATAACGCAAATCGTTCACACTATCTCCCAGTAGTGTTCATTAAATATGATCATTGATGTCAACAATACTGTAATTAAATGTTCTGGT
>XM_039816213.1
CAGTGTTCGCTCCCAGGCAGTGTGGTGGAGCAGTTTTGAGCTGCCTGCAGTGTGTATTTTGGTGTTTCTGCAGAGTTGTGGGAGAAAGGCAAGAGATAGAGGAGCAGAGCAGCAGACAACTGTGGATGGAAGGAAGCCGTCAGCACCATAGTCACCATTAATCACCCAGGGCCATTGTGGTCCTGTCCTCTATACGGCGCCagtgcaggcaggcaggcagacagagagaaagaagaatagaggaagagggagagagggggcagGGTGGCTtcagggagaaagagggggagagaatGGTTGGGGATCAGCCTGTATGTCCACCTCAGCACCTACTGCAGGGCTGGGGAGCAGTGTTGCTGTCTCAGTGCTTGTCCTCCGTGTTCTCCCAGGTTCCGGATCCTGAGCTCTTGCCCACAGATCCCCCAAAGAAGCCGGACCCcatcacctcagagtcagttgtTTTCTGGGGGCTGCGGTTATGGCAGGTCATCGCCATCTTTTCTGTGTTTATTTTAGCAATTGttATCGCtctatgttgtatattcaaaTGTAGAATCCCGAGAACCAAGAAGGAAATAGAGGCACGGCACATGCAAAGACAGGCCGCCAAGAAATACGCCAACACATTAGAAACAGTGCCACCTCTGAATGAGCTGACTGAGGTCCCAGGCTCTGCCCCAGATGCTTCTGCAGTGCAGACAGTCTCCGAGCATGTCCACACTCAAAGTGCTAACAACAGACAGCCTTCAGTAGTTAGGGTCAGCGAGGAGCAACCCAGCTCCCTCACCTTGCCAGAGACGGGCaagaagaccaAGGAGGGCAAGAAAGAGGGCAAGGATGCCAAAGAAGGAAAAGGAGATGAAAAGAATACGTCAACAAAGAAgggtgaaaaaggtgaaaaGGGAACATCCAAGAAAGATGCTGGTGACGGGAAAGGAAAGAAATctggagagaaaggagagaaagtgGAAAAAGGAGGCAAAGGAGGCAATGGAGGCAAAGGAGGGGTTAAAGGGGGAGCCAAGAAAGCTCAGAAGTGAACTCTGCCTTCCATGGACAAACActgaaaaatataatttcatatttttcact

Function

symbol description
tmie Acts upstream of or within posterior lateral line neuromast primordium migration; sensory organ development; and sensory perception of sound. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain and otic vesicle. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 6 and sensorineural hearing loss. Orthologous to human TMIE (transmembrane inner ear).

NR:

description
PREDICTED: transmembrane inner ear expressed protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157105 True 1429 lncRNA 0.44 5 20988324 20995540
XM_039816213.1 False 1092 mRNA 0.51 5 20984801 20995567

Neighbor

gene id symbol gene type direction distance location
myl13 myl3,LOC105919861,LOC102217899,LOC107395748 coding downstream 61137 20920596 ~ 20923664 (-)
LOC120569019 aqp1,LOC103358082,LOC101079855,LOC104917699 coding downstream 166637 20815649 ~ 20818164 (-)
thoc1 thoc1 coding downstream 185256 20792744 ~ 20799545 (-)
greb1l NA coding downstream 244772 20693367 ~ 20740029 (-)
mib1 mib1 coding downstream 308975 20620288 ~ 20675826 (-)
ccdc13 NA coding upstream 6413 21001980 ~ 21006127 (-)
jmjd4 jmjd4,LOC102786139 coding upstream 55772 21051339 ~ 21053776 (-)
wnt9a wnt9a,LOC106599874 coding upstream 137435 21133002 ~ 21151186 (-)
c11h1orf35 LOC104963886,LOC103374549 coding upstream 201726 21197293 ~ 21201627 (-)
LOC120568841 NA coding upstream 218099 21213666 ~ 21268376 (-)
G116525 NA non-coding downstream 65085 20918969 ~ 20919716 (-)
G116508 NA non-coding downstream 157090 20827512 ~ 20827711 (-)
G116499 NA non-coding downstream 178110 20806153 ~ 20806691 (-)
G116484 rock1 non-coding downstream 213773 20768635 ~ 20771028 (-)
LOC120568747 NA non-coding downstream 399124 20580520 ~ 20585677 (-)
G116580 NA non-coding upstream 63025 21058592 ~ 21061240 (-)
G116582 NA non-coding upstream 111947 21107514 ~ 21107718 (-)
G116651 NA non-coding upstream 213175 21208742 ~ 21209773 (-)
G116692 NA non-coding upstream 301848 21297415 ~ 21300082 (-)
G116743 NA non-coding upstream 597172 21592739 ~ 21595306 (-)
xcr1b.1 NA other downstream 1189042 19793342 ~ 19795759 (-)
G116138 NA other downstream 1519421 19464700 ~ 19465380 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other downstream 1762075 19221791 ~ 19222726 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other downstream 2049310 18931974 ~ 18935491 (-)
G115941 NA other downstream 2138524 18844905 ~ 18846277 (-)
higd1a higd1a other upstream 12481 21008048 ~ 21010576 (-)
G116969 NA other upstream 1266431 22261998 ~ 22268559 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 2350151 23345718 ~ 23361580 (-)
G117259 vps4b other upstream 2434799 23430366 ~ 23430992 (-)
LOC120568062 LOC108239646,LOC104957657,LOC101467149,LOC102793932,LOC103364894 other upstream 2473053 23468620 ~ 23491612 (-)

Expression


Co-expression Network