G116758 (pcmtd1)


Basic Information

Item Value
gene id G116758
gene name pcmtd1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21658679 ~ 21660467 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU157375
TGAAATTGTGAAATCTGAATCTCAAAATGGGCTTCTGAAACTATGTCCTTTAGgtatactttttacattttatttaatttttttatttatttttttacatacaacTCAAAAGAAAATTGTCGACAAAAACTAACAACTCGTGACAATCATAACATTATTATCCAATATTATCTGACGTATCTTTCCATTACAGTTTTGCCATCAAGATTTAATGGAAATAATGCTACATTTGtacagaaaagaggaaaaagcattTCAGCAGGCCCTGCACCCATTAAGAGTGGACATCGAGTTCATCAGTCATTTCTCTCTGTAATACAGCAAAAATGCTTTAAGTGACTCAGGCAGCGGTAAAGCCATTATTTGGTCTCTCAACACGCTCACTTGCTTGAGGATTTCAATGTCGCCAAggtctctttcctcctcttcctcctcctccacttcctTGTGTTCTTCCTCAGCgtgctcctcctcctcgctcTCCACCATTTGAGGGATCAGCTGGTTGCCTACAAAAACGTAGGTGTTGATGCGTCGCCGTCGGCAGCGCCTGCGTTTGCGCTTCTGGGGAACTCTTTGCACCATCCCCTTCCCTTGACTATCCTCATTGGCCAGGTTTCTGAGAGTGCGGCGTATGTAGATCCGAGACAGATCCTGAAGGCTGCGGACAGTCACTGGGGCAGCTGGACAGCGTCAGGCTTCTCTCCATCAGCTCTGCTCTGCTGGACCAAGGGGGCAAAGGACACCGCCAAGATGTTTTTACTCTCCCATGTGCACTGACCAGTCCTGGTTATCTGGGTCAGCTGCATGAAGAGACGAAACCTGAACTCAACacttataaaatatgaaatactgTGTGACACTCGGGAGCAAGAATTGAGGGCCTATACCGGCAGTTCCTTCAAAATATAATTACGTCTTGCTTATTGTGCATTTAGTAAATTTGCCACCTGAATACAGAGGATTCTTATGGGGACATGGTTGGTTtgcttctctgtataaatacggTGTTTGCTTATTTAATAACAATCGCATCTAATGATCTTACTCCAATTCAAAGTGTTCATTATGGTTGGCAAATGTACATACACTGTGTGACCAAAGATAAACCTTGCCAGTGGAGATGGAAAAAAAGCCCCTTTTACGTTTGCATACTTGATGCTACATCAAATAGGTGCATGAAAAATGACACACTTGCTTTGTATGTGACCAAATTACTGCCAACAGGCTTAAAGAACTATCTAACAGACTGAGAAAGGTCTGAGCATCAACAAGACAGTGTGGTAGCTTTTTAAAGGAAACAATCTCAAAAAGGTGTACAAATGAATGGACCAGACGCTAAGGGTGAGCGATatagataaaataataataaaggttTTAAGTTTATATCGTAACACAGATGTAtgaatttatttttcagaaaatcAATTGAGAAAT

Function

symbol description
pcmtd1 Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cytoplasm. Is expressed in central nervous system. Orthologous to human PCMTD1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1).

NR:

description
PREDICTED: protein-L-isoaspartate O-methyltransferase domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157375 True 1437 lncRNA 0.41 2 21658679 21660467

Neighbor

gene id symbol gene type direction distance location
agap3 agap3,LOC102197517 coding downstream 87059 21449437 ~ 21571620 (-)
asic1c asic3 coding downstream 336195 21303361 ~ 21322484 (-)
atg9b atg9b coding downstream 373740 21273384 ~ 21284939 (-)
LOC120568841 NA coding downstream 390303 21213666 ~ 21268376 (-)
c11h1orf35 LOC104963886,LOC103374549 coding downstream 457052 21197293 ~ 21201627 (-)
sntg1 sntg1 coding upstream 6272 21666739 ~ 21704105 (-)
ube2v2 ube2v2,ub2v2 coding upstream 106654 21767121 ~ 21783891 (-)
mcm4 mcm4 coding upstream 124832 21785299 ~ 21794603 (-)
spidr NA coding upstream 138489 21798956 ~ 21833615 (-)
mapre2 mapre2 coding upstream 174047 21834514 ~ 21847366 (-)
G116743 NA non-coding downstream 63373 21592739 ~ 21595306 (-)
G116692 NA non-coding downstream 358597 21297415 ~ 21300082 (-)
G116651 NA non-coding downstream 448906 21208742 ~ 21209773 (-)
G116582 NA non-coding downstream 550961 21107514 ~ 21107718 (-)
G116580 NA non-coding downstream 597439 21058592 ~ 21061240 (-)
G116832 NA non-coding upstream 150395 21810862 ~ 21811146 (-)
G116893 LOC104955993 non-coding upstream 337327 21997794 ~ 22002858 (-)
G116922 NA non-coding upstream 517826 22178293 ~ 22178534 (-)
LOC120568857 NA non-coding upstream 521497 22181964 ~ 22205991 (-)
G116954 NA non-coding upstream 534857 22195324 ~ 22200980 (-)
higd1a higd1a other downstream 648103 21008048 ~ 21010576 (-)
tmie tmie,LOC102776014 other downstream 663112 20984801 ~ 20995567 (-)
xcr1b.1 NA other downstream 1862920 19793342 ~ 19795759 (-)
G116138 NA other downstream 2193299 19464700 ~ 19465380 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other downstream 2435953 19221791 ~ 19222726 (-)
G116969 NA other upstream 601531 22261998 ~ 22268559 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 1685251 23345718 ~ 23361580 (-)
G117259 vps4b other upstream 1769899 23430366 ~ 23430992 (-)
LOC120568062 LOC108239646,LOC104957657,LOC101467149,LOC102793932,LOC103364894 other upstream 1808153 23468620 ~ 23491612 (-)
LOC120568990 LOC101487892,LOC104941256 other upstream 2190606 23851073 ~ 23856621 (-)

Expression


Co-expression Network