G117112 (LOC104949490,LOC101162245,LOC103371147,LOC108239677,LOC107092425)



Basic Information


Item Value
gene id G117112
gene name LOC104949490,LOC101162245,LOC103371147,LOC108239677,LOC107092425
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22807072 ~ 22809753 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>TU157840
gtGTAATGATTAGTAAATGCCCATGAGTTATTTAGCTCCTTCAAGAGCCAGACATGGTAAATTATATTTCTGGTGAACTATAATTCTATAATTGGGAGTCATCCTGTGGTGGAGTTTATTGGCCTTTGTATCCTCACTTGTGAGCAGGACTGCAGCATCATCTCTAAGTAGATATATATTTTTCGCTGAGTCACCATGAAAGCTGTCTCGGTCTGACTCAGCTGCACATGGACAATGCATCACACTACTGGTCCATCGCGGAGAGACTGCGGAGGCTTTATGCTGGAAAAATACATTGCTGTACAGTGCTGTCAGGTGAAACGAAGCACAGCTTTACAGGGTATGACAGCaactgctgacacacacacatattgtatGTGCAGTTGGTTCAGTGTGAGCACTGACATGATTTAATGTCTACTCACCAAAGACAAAGTTGTCAGGCCTGAATAGCTGTCCAAACGGGCCGGAGCGAACTGAATCCATGGTTCCTGGCTCCAGGTCGACCAGAATGGCACGAGGGACATATTTGCTGCCTGATGCCTCATTGTAGTAGACATTTATCCTCTCCAGCTGCAGGTCACTGTCACCTTGGTAACTACCGGTTGGATCGATGCCATGCTCATCACTTATCACCTCCCAGAACTTCGCCCCAATCTGATTTCCACACTGTCCAGCCTGGATGTGAACGATTTCCCTCATGGTGCGTTGCGGATGCGGGCAGAGAGCGTCCTGTCTCGACTTTACCGGCGTCCAGTCTTCCGTCTCTTGCCGTTGTGTTTCTCAAAATCTGCACCACATTTCTAGAGCGAGTGTTGAGCCGGCGAGATAGATAAACGTGCTGCTGGTCAGATGACGTTACACACAGCGCAGCATCCCAATATCCCTGTCTGCCAATAGGAGCGCTCGGCTTTGATGCAGTGGTCTAGAGGATCATGCCGCATCATCC

Function


NR:

description
PREDICTED: tubulin beta-2A chain isoform X2

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU157840 True 949 lncRNA 0.48 3 22807072 22809753
Loading

Neighbor


gene id symbol gene type direction distance location
LOC120568106 dsp,LOC104949487 coding downstream 49458 22739634 ~ 22757614 (-)
LOC120568657 tns3 coding downstream 68824 22703464 ~ 22738248 (-)
LOC120569075 LOC104929330,LOC103371151 coding downstream 112397 22689074 ~ 22694675 (-)
LOC120567969 LOC103368948,LOC102290339,LOC102784041,LOC100706175,LOC101476947 coding downstream 184194 22576333 ~ 22622878 (-)
phlpp1 LOC103368950,LOC101477421,LOC102207086 coding downstream 233265 22525261 ~ 22573807 (-)
LOC120567909 NA coding upstream 6213 22815966 ~ 22824647 (-)
psma8 psma8,LOC102789190,LOC101062730 coding upstream 362305 23172058 ~ 23177122 (-)
LOC120568995 hrh3,hrh4,LOC103143019,LOC103479572,LOC102223873,LOC108239625 coding upstream 503614 23313367 ~ 23317690 (-)
LOC120568611 lama3 coding upstream 553276 23363029 ~ 23421777 (-)
kmt2cb NA coding upstream 683210 23492963 ~ 23571363 (-)
G117055 LOC104929332,LOC102785373,LOC100706434,LOC102205468,LOC106925933,LOC103142996 non-coding downstream 132622 22670733 ~ 22674450 (-)
G117052 NA non-coding downstream 174804 22629896 ~ 22632268 (-)
LOC120568857 NA non-coding downstream 601081 22181964 ~ 22205991 (-)
G116954 NA non-coding downstream 606092 22195324 ~ 22200980 (-)
G116922 NA non-coding downstream 628538 22178293 ~ 22178534 (-)
G117117 NA non-coding upstream 15620 22825373 ~ 22825583 (-)
G117114 NA non-coding upstream 23313 22833066 ~ 22834881 (-)
G117119 NA non-coding upstream 26302 22836055 ~ 22865958 (-)
G117137 NA non-coding upstream 150762 22960515 ~ 23110187 (-)
G117148 cdh2,LOC102787731,LOC102201754,LOC101473079,LOC103371087 non-coding upstream 212472 23022225 ~ 23089827 (-)
G116969 NA other downstream 538513 22261998 ~ 22268559 (-)
higd1a higd1a other downstream 1796496 21008048 ~ 21010576 (-)
tmie tmie,LOC102776014 other downstream 1811505 20984801 ~ 20995567 (-)
xcr1b.1 NA other downstream 3011313 19793342 ~ 19795759 (-)
G116138 NA other downstream 3341692 19464700 ~ 19465380 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 535965 23345718 ~ 23361580 (-)
G117259 vps4b other upstream 620613 23430366 ~ 23430992 (-)
LOC120568062 LOC108239646,LOC104957657,LOC101467149,LOC102793932,LOC103364894 other upstream 658867 23468620 ~ 23491612 (-)
LOC120568990 LOC101487892,LOC104941256 other upstream 1041320 23851073 ~ 23856621 (-)
G117560 NA other upstream 1689627 24499380 ~ 24536496 (-)

Expression


G117112(LOC104949490,LOC101162245,LOC103371147,LOC108239677,LOC107092425) Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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G117112(LOC104949490,LOC101162245,LOC103371147,LOC108239677,LOC107092425) Expression in each Bioproject

Bar chart with 6 bars.
G117112(LOC104949490,LOC101162245,LOC103371147,LOC108239677,LOC107092425) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Co-expression Network