G117205 (osbpl1a,LOC100709115,LOC102786734)


Basic Information

Item Value
gene id G117205
gene name osbpl1a,LOC100709115,LOC102786734
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23339536 ~ 23341315 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU157966
CTTGAACATCATGCTGCATCTCTCTCCGGTCTTGTGATTGAGCACTTCCACGCTGCCGTACTGCTCAATCCAAAGCTGACCAACAATGATGTTGTGGACACAACAGGTGGGGTTTGTCCAGGTGTATGCTTCGTTATATTTGGGCAGCTCCAGTGTGATGAGTCCCTTGGGCTCAGCTTCTATGCTCTTTCCCCAAAACTTGAGTTTGGGGTAGATGGAGCCATGGAAGACAAAATCCTCATTGAGGCCCTCAGCATGAAAGGCACTGACTGGAGGGTGATGGCTTACTTGCTCTGACACCCACCTAAAGCCCAAATCGTCTCTGATGAGCTCATAGGTCTCCCCCAGTAGTGGGTTGAAGGGTTTCCCAGTCCTCTCCCACTGCGATGCTACAGCTGACACAGCAAATGCTGCAACACACTTCATCCGCTCGACAGAGTCGGTTGTGGCGTTGGCCTGGTGGATGAGGTAGGTGTGCTCCATGTATTCTGTTAACCGCTGGAGGAAACTCAGAGGCTCATTAAATATTACAGGCATGGCAATCTTTGACAACTCCTGAAAATGAAATTGGGAGAAGATAAAAGAAACCGTGAGGAAACAGAGTATTGCATGGGCAGAGGATTGTGTGCATAATTGACATTTAATTCAACAACCACAAGACCGTACCATCTGCACCCCATGCGTGTCTGTGTATCTGCCTGCCTTCTGAATTGCGTATGCATGAATCATTAGCCACATTTAATTGGGGAATAAAACATTAATAGACAttattaaatgtaatta
>TU157968
CTTGAACATCATGCTGCATCTCTCTCCGGTCTTGTGATTGAGCACTTCCACGCTGCCGTACTGCTCAATCCAAAGCTGACCAACAATGATGTTGTGGACACAACAGGTGGGGTTTGTCCAGGTGTATGCTTCGTTATATTTGGGCAGCTCCAGTGTGATGAGTCCCTTGGGCTCAGCTTCTATGCTCTTTCCCCAAAACTTGAGTTTGGGGTAGATGGAGCCATGGAAGACAAAATCCTCATTGAGGCCCTCAGCATGAAAGGCACTGACTGGAGGGTGATGGCTTACTTGCTCTGACACCCACCTAAAGCCCAAATCGTCTCTGATGAGCTCATAGGTCTCCCCCAGTAGTGGGTTGAAGGGTTTCCCAGTCCTCTCCCACTGCGATGCTACAGCTGACACAGCAAATGCTGCAACACACTTCATCCGCTCGACAGAGTCGGTTGTGGCGTTGGCCTGGTGGATGAGGTAGGTGTGCTCCATGTATTCTGTTAACCGCTGGAGGAAACTCAGAGGCTCATTAAATATTACAGGCATGGCAATCTTTGACAACTCCatgccaatgcatt

Function

symbol description
osbpl1a Predicted to enable cholesterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; intracellular membrane-bounded organelle; and membrane. Used to study visceral heterotaxy. Orthologous to human OSBPL1A (oxysterol binding protein like 1A).

NR:

description
PREDICTED: oxysterol-binding protein-related protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157966 True 783 lncRNA 0.47 5 23339823 23341315
TU157968 False 569 lncRNA 0.50 6 23339536 23341315

Neighbor

gene id symbol gene type direction distance location
LOC120568995 hrh3,hrh4,LOC103143019,LOC103479572,LOC102223873,LOC108239625 coding downstream 21846 23313367 ~ 23317690 (-)
psma8 psma8,LOC102789190,LOC101062730 coding downstream 162414 23172058 ~ 23177122 (-)
LOC120567909 NA coding downstream 514889 22815966 ~ 22824647 (-)
LOC120568106 dsp,LOC104949487 coding downstream 581922 22739634 ~ 22757614 (-)
LOC120568657 tns3 coding downstream 601288 22703464 ~ 22738248 (-)
LOC120568611 lama3 coding upstream 21714 23363029 ~ 23421777 (-)
kmt2cb NA coding upstream 151648 23492963 ~ 23571363 (-)
arhgap21b NA coding upstream 341420 23682735 ~ 23724031 (-)
prtfdc1b LOC103364899,LOC104918289,LOC107083373 coding upstream 384172 23725487 ~ 23734384 (-)
LOC120568659 LOC104941252,LOC103479586,LOC107083372,LOC104918287,LOC103143038,LOC100704482,LOC107383950,LOC101069707,LOC103396165,LOC106929027,LOC101464457 coding upstream 395663 23736978 ~ 23786041 (-)
G117203 LOC103364864 non-coding downstream 1918 23331379 ~ 23337618 (-)
G117158 NA non-coding downstream 173780 23165465 ~ 23165756 (-)
G117137 NA non-coding downstream 229349 22960515 ~ 23110187 (-)
G117148 cdh2,LOC102787731,LOC102201754,LOC101473079,LOC103371087 non-coding downstream 249709 23022225 ~ 23089827 (-)
G117119 NA non-coding downstream 473578 22836055 ~ 22865958 (-)
G117206 LOC101469337 non-coding upstream 39 23341354 ~ 23341923 (-)
G117265 NA non-coding upstream 105043 23446358 ~ 23462296 (-)
G117302 NA non-coding upstream 444775 23786090 ~ 23786473 (-)
G117311 LOC103366706,LOC100534445,LOC107383951 non-coding upstream 474576 23815891 ~ 23819966 (-)
G117324 NA non-coding upstream 500931 23842246 ~ 23843595 (-)
G116969 NA other downstream 1070977 22261998 ~ 22268559 (-)
higd1a higd1a other downstream 2328960 21008048 ~ 21010576 (-)
tmie tmie,LOC102776014 other downstream 2343969 20984801 ~ 20995567 (-)
xcr1b.1 NA other downstream 3543777 19793342 ~ 19795759 (-)
G116138 NA other downstream 3874156 19464700 ~ 19465380 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 4403 23345718 ~ 23361580 (-)
G117259 vps4b other upstream 89051 23430366 ~ 23430992 (-)
LOC120568062 LOC108239646,LOC104957657,LOC101467149,LOC102793932,LOC103364894 other upstream 127305 23468620 ~ 23491612 (-)
LOC120568990 LOC101487892,LOC104941256 other upstream 509758 23851073 ~ 23856621 (-)
G117560 NA other upstream 1158065 24499380 ~ 24536496 (-)

Expression


Co-expression Network