LOC120568990 (LOC101487892,LOC104941256)


Basic Information

Item Value
gene id LOC120568990
gene name LOC101487892,LOC104941256
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23851073 ~ 23856621 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU158140
TTCAGATTGCATAAAAAAGTAACTGTTCCCCGTCACTGTGATGTCTTCTTGTCAGTTATGAACTCGACTGGTTAAAAGAGACATTCAAACTGATTTCCTTTGAAAGGAAAGTTGCCTTAGACTGAGATATCAGAATCAAACTAATGAGGGCTATAACACAAGTGCACAATAGCATTTAGCTTCAGAAAGCCTTTGTTTGGCTCTGGATTTCTATTCCATATTGTTAAAAAAGCCTCAAcaagttttttgtgtgtgggtaTAACAAATGCATGCAAATGACTTAGATGTTTCATCTCAGCAGACATTTATATAGAGTAGCAGGTGAGTGAACATCTGCATACAGATATACAGTCCAGTGACCAGAGCATTACCATATAAGGTGTTAACCTTCATTATTTGTGACACAGCTCCTCAAATGGACCAGTTTCTCTGtcaaagctctctctctctaagcttattttttgcaagttcagaGAACTGAGTTATGGAAATGCAAACACCCTCTTGTGAACTATTGGTGTTATCTGTGTATTTTAATTTGTGTAGCAC
>XM_039816770.1
CAGAGGtccacagagaggagagaagatgcTCTGCGCGCCAGATCAGATAGCCTGTGCATTTATGAAATATGACGACTCCACGCCGACTACCGGAGAGATGCCTCGCATATATTAGCGGTTTCCCTCCATTTCCGTTGCAGGATGACCTGTCAGGTGCTACGTGTGTCTCTGTCCACATCATGAGTAGCGCACGGTGTTGCGTCTGTGTGTCAACTCAGAAGAAATGCCTTCTCACCTAAGTgatttttcctctcttctcctcggACATTATATAGCCTACATCAGTAGGTCGGATCgccttgtttttgtgtttccgTGGCCACTGATTGATGACTTGTGCCCCCAGGACTGTGAAGCTACGGAAGCAGGATGAAAATCCCTCATTTGGTGTCCCTTTAACCCCTCAGTAATTACACCCTGCTATTAGACTGGGAATCTCGGTGAAAATCAACTGATTAAACAATGCAAAGACCTTCAATATATCGACATAAAGgACAAAGATGTTTCCTGGCTGTGGATTTATTTAAGCATTGCCATGGGGAAGAGTTTGGACTGAAAGACAGAGAGATTTGATAACACAGTGGAAGAGACAGAGCCTGGAGGTGAAGACATGGTCATCACTGATAGAAACACCACCACCCCTGTACCTAAAAAGGAGCCACAGAAGAAGACGAGGAGGAAGTCTCGCCCTCATGGCCTGCCCTCTCCGGCACTCTGCTGTGCCTGTGGCCTATGCATCATGCTGGCTGGACTCAACATCACCCTGGTGGGAGCGTTCGCCTTCAGCACACTGGTGCCTTCTGCCAATCCCCCGATCATCATCGGACCTATCCTCCTGCTGGTGGCCTTTTCCTTTTTCGGGGCCTGTTGTGTGTGCAGCCgcctcccccctccccacagCTCCCGGAGGTCTAAGGTGGGCAGCAGAGGTACAGGGCTGATGGGACATGGCGGGCTGGCTGGTGGAGCAACGTTTGAAATAGAGACCAGCGAGCACACACTGCAGGATACTACAGCTGTGCAGCTAAGCCCCACATCCTCGCCTGGATCATCCCAGGCATCCAGCCCAGAAAAGGAGCCTCCTGACATGGCCCTACCAGGACCCTGCAATCTTTTCACCATGGAGACCAACGGCCCTTCTGTTTCCGCCACCGCAGTCTACTCAGCCTCCACAGCAACAGGAGGGGAGGTGAGGCTCAACCTGCCACGTGAAGAAGTCGCCTAGCAAAGCAGAAACTCTTCCAAGAACGGAGTGATTGCCAGTGTAAATATCCTTCTGGGTAGAGGGCTTGCTGAGTGTGATTGTGTCCTCTAGTTTACGTAGTGCCATATTTCTGGTCGTGAACAGTTTGCTTTTGATTTTCTTGTTGTGCAGCCAACTGGTAATTAGCATGCAAAGTTAATGAAACATCCAAGTGTTTGTGGATCATAGGTTTTGGAATTCAAATTCCTACCTCTGTTGTGCTGTTTTTTCCTACAGGTCTTTGTTTTTAACGTAGGGCATTATGAACAGTTTTCAATTTGGAAATATAACAAAAAGTGTCGGAAACCATAAAAATTTATATTCCACTGCTACTCCGGTTTGTTGTAACCTCAGCGGTCAGCAGTGATTTCAGAGGGCTGGACTGAAAAATATGATTGTTTATTTGTTCTGAAAACTTAAAGATTAGATGTGAAAGGTGAACAGTGAACTGTACAAGTACATTTGTAGTGACATTTGGCATTTTGTGTGCCATTCTCAGtgctgaacttgtttttggggcATTAGATATTATAGGTCATAGGGGTCCCAAAGCAATATCCTCTCACCTGACATTAAATTCTCTGCATTTATAGTTCTTTTAACAAGTAAGTGATAACACACTACTTGTCTACAGCCAATACATTTGTCATGAACAAACAGTGTGTTAACATAACATGTAACTGTGTACAAGCGTTACCTGTAGTTTGACAAACATCTGTCATCACACCAATATTAACACTGTGAATATTTTTCTCAGCACATTGCTTTGTGATTTCACATGCACATTTTCATTAATGGTAGTCGcaactcagtttttttttgcaaactttatttagatttttccgTACAAAATAACAAGTAACATCTCCCATTTCCACCCCCATCCATACCAGGgtcaacataaatacatacaaatgaATCAAGCAAACAGTAGACAAAAACAATGATATCTAAATAGTCAAAAAAGAATTGTGTGCAAGATGTGTGCATATAGACTAGACTAGAGTCAGACCATAAAAGTTCTCCTCTTTAGTGTCTTAGCACTATAACTTTGGTAGAAAAAGGGCTTAATTCAAGCAAAAGACAATGTTTCTACGTATCCTTTGAAAGGGGACCAAGTTGTATAAAACTTTTCCTAGGTCATTATATCTTTTTGATCCATTAAATGTAGGGGGACATTTGAGAAGAATGAGATGGCGGGGCCCAGAGAGAATGCCAAATGACAGTGATAGGGTTGAGGTCAAGCATTCTACCACACACATGCAAGAGGGGTTCAAAGATAGGTTTCCAGAAATGATTCAGTGTCTGACATGTCCAAAACATGTGGCCCAAAGTGGCAGGGCTTTGGTGGCATCAGGGTCAATTGGCATTCACTGTATGGAATATTTGAGCTAGTCtagcatttgaaaaatgcaGTTGGTAAAGGACTTTGAACTGTATTAATCCATGTCTTATACAGAGGGATGAGGTATGGATGTGTGCTATACTGTCTTCCCATACCTGCTCTGATAGTTCGTCCCCAATGTCTTCTTACAAAGCTACTTTGTTGTCGGCACAAGTAAGGGGCTTAATGTGCTGAATCACAGTATACCCTGGAGATTAGGCCATTCCCATATGGGTTAAGATCTAAGAGGTAAAATACCGGATCGACTGTGGTAGTACCAGAGAAGGATGGAAAATGATACATTTCTGGACCTGCAAGTATCTAAAAAAGTGTGACCTGGGaatattattgtttttacataaacttaggaaaaaaacaaagaccATTGCCACAACTTAAACGCTGAATCTATTTGTGATGGTAAGAATAGGTGTTTAAAGGTTAAGTGGAAAAAAGTGCTTGTTTGCTGAAGATTGAAGTGTCTTCTGAATTGGTTCCAGATTCTAAGGGAAGTTTTTACATTGGGATTTGCAGTGTGGATACCCAGATATAGAGGTAATGGAGAGGTCAATAGCGACCAAGTCGGAAAATGTGGTAATACAGAAAGATAATTTAGATATGTTTGCAATAATTATGATGTAAATTGGGTAGACCTAGTCCACCTTTTGGTTTTGACCTTTTCAGATATACCTTTTCGCACACGTGGCTTagatttatttcaaataaatgtagagATATATTTGTccaattgtttaaaaaatgacttgggTAGAAAAATGGGGATCATCTGGAACAAGTATAAGAATCTTCTAATTTTAACAGAATTAGTGCGCCCTGCTAAAAAATAGGGAGTCAACTCACAGTTTTAACGTTGAGCTCATCATGCTATTtcatatacattcatatattCATATCATGATCCAAGTGGAATAGGACACTTACTGTACCTTACTGTAAGGCATAGAAATGTGTCATAATGATGATTTTTTTCATCATGAATTTGAATTCACAGTGGGACCCCACAAAAGAATGTTTTACAAATATGAATTTCACAgtattgatatatattttttttttatgtccagTATAAGACAAACTTTAATTTCACATTCAGAAGAAGTTAACCTCCACTGGACCTTGTATACACAATATAGGGGAGCAAAGAAGTCTGACAGAGTTAAGATATTCAGATTGCATAAAAAAGTAACTGTTCCCCGTCACTGTGATGTCTTCTTGTCAGTTATGAACTCGACTGGTTAAAAGAGACATTCAAACTGATTTCCTTTGAAAGGAAAGTTGCCTTAGACTGAGATATCAGAATCAAACTAATGAGGGCTATAACACAAGTGCACAATAGCATTTAGCTTCAGAAAGCCTTTGTTTGGCTCTGGATTTCTATTCCATATTGTTAAAAAAGCCTCAAcaagttttttgtgtgtgggtaTAACAAATGCATGCAAATGACTTAGATGTTTCATCTCAGCAGACATTTATATAGAGTAGCAGGTGAGTGAACATCTGCATACAGATATACAGTCCAGTGACCAGAGCATTACCATATAAGGTGTTAACCTTCATTATTTGTGACACAGCTCCTCAAATGGACCAGTTTCTCTGtcaaagctctctctctctaagcttattttttgcaagttcagaGAACTGAGTTATGGAAATGCAAACACCCTCTTGTGAACTATTGGTGTTATCTGTGTATTTTAATTTGTGTAGCACTTCTACAAAAATGAAAATCTGGAAAATGTAAAGGATAGAATATTTTTGTGAAGAttataatttgtttatttttaaaaaaaagcagcattCCAAATGTGAATCTTTCAAAAGATACAAATAAAAAGGCTCTTTCAGTAGAACACGAGGTTGCTCATTATGTATGCGTGGCATGACACTGTGTTCTTGCtacattgcattttgtgtcatcatgaagtgaaatgaataaaaatgtccAACTGGG

Function

NR:

description
uncharacterized protein LOC101487892

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158140 False 549 lncRNA 0.37 1 23851314 23851862
XM_039816770.1 True 4602 mRNA 0.41 2 23851073 23856621

Neighbor

gene id symbol gene type direction distance location
LOC120568659 LOC104941252,LOC103479586,LOC107083372,LOC104918287,LOC103143038,LOC100704482,LOC107383950,LOC101069707,LOC103396165,LOC106929027,LOC101464457 coding downstream 65032 23736978 ~ 23786041 (-)
prtfdc1b LOC103364899,LOC104918289,LOC107083373 coding downstream 116689 23725487 ~ 23734384 (-)
arhgap21b NA coding downstream 127042 23682735 ~ 23724031 (-)
kmt2cb NA coding downstream 279710 23492963 ~ 23571363 (-)
LOC120568611 lama3 coding downstream 429296 23363029 ~ 23421777 (-)
kncn kncn coding upstream 4550 23861171 ~ 23865766 (-)
trnai-aau_23 NA coding upstream 11331 23867952 ~ 23868025 (-)
trnap-agg_8 NA coding upstream 12534 23869155 ~ 23869226 (-)
itm2cb itm2c,LOC103366712 coding upstream 49225 23905846 ~ 23912764 (-)
per2 LOC103366709 coding upstream 60120 23916741 ~ 23933804 (-)
LOC120568991 NA non-coding downstream 1115 23843831 ~ 23849958 (-)
G117324 NA non-coding downstream 7478 23842246 ~ 23843595 (-)
G117311 LOC103366706,LOC100534445,LOC107383951 non-coding downstream 31107 23815891 ~ 23819966 (-)
G117302 NA non-coding downstream 64600 23786090 ~ 23786473 (-)
G117265 NA non-coding downstream 388777 23446358 ~ 23462296 (-)
G117337 NA non-coding upstream 29843 23886464 ~ 23888799 (-)
G117341 NA non-coding upstream 37538 23894159 ~ 23895101 (-)
G117342 NA non-coding upstream 38898 23895519 ~ 23895770 (-)
G117343 NA non-coding upstream 39354 23895975 ~ 23896911 (-)
G117369 NA non-coding upstream 78298 23934919 ~ 23938107 (-)
LOC120568062 LOC108239646,LOC104957657,LOC101467149,LOC102793932,LOC103364894 other downstream 359461 23468620 ~ 23491612 (-)
G117259 vps4b other downstream 420081 23430366 ~ 23430992 (-)
LOC120569135 ttc39c,LOC102790819 other downstream 489493 23345718 ~ 23361580 (-)
G116969 NA other downstream 1582514 22261998 ~ 22268559 (-)
higd1a higd1a other downstream 2840497 21008048 ~ 21010576 (-)
G117560 NA other upstream 642759 24499380 ~ 24536496 (-)
G117732 NA other upstream 1065582 24922203 ~ 24923318 (-)
camk2n1a camk2n2 other upstream 2459149 26315770 ~ 26319595 (-)
G118175 NA other upstream 2805000 26661621 ~ 26665952 (-)
cirbpa cirbp other upstream 2963217 26819838 ~ 26824570 (-)

Expression


Co-expression Network