hes6 (LOC104918282,LOC104941260,LOC103366710)


Basic Information

Item Value
gene id hes6
gene name LOC104918282,LOC104941260,LOC103366710
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23912664 ~ 23914498 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU158169
CCTCGGAGCAGCATTAAGGAGCCCAGTCTCTCTGCAAGCTTTGTTGGCCGCTGGGATCGCCCGACCATCTGTCCCATTGACAAGCTGTAACGGCTCTTTGGATTACACACCAACCTCCAGCCCAGTGGGTTTCTGGCAGCGCCTGGGTTAAACTTTAACAACATGGCCCCCATCAGTAACAACACAAACGGAACGGACAGAGGTGATAACTGCAGTGGAATCAAATCTGAAAGAAAGATGAGGAAACCTCTGGTCGAGAAGAAAAGAAGGGCTCGCATCAATGAAAGTTTACAAGAACTCAGAGTTCTCGTGGCGGATGCAGACTTACAATCAAAGATGGAGAATGCCGAAGTGCTGGAGATGACAGTGAAACGTGTGGAGAGAATCCTGCAAAACCGGGCTCAAGCTGCCCGGGAATTGACCCAACATTATCCGCGGAGCTGTTGAACCACCTCCTGGAGAGCATGCCCCTAAACGACGAAGACCGCCTCCGGGTGATGCTGCCGGACACGTTTACAGAGTGCCCCGGCAGCAACAGCACTTGGTCCCTGTCTGAGAGCATGTACACGGCTCTAGTGTCCCCGGCCCCTTCCACCACCTCCACCGATGACCTCTGCTCTGACCTGGATGAGACGGACTCGGAGCAAAGTCATGTTTCTTCTTCGGAGGAGGCTGAAAGCCAGGATGTGTTGTGCTCGCCTTCCTTAACTTACTCCAAGTCAATGTGGAGACCATGGTAGATCATTTTAAAAAAGGAATAGCATGTTTTAAACCACGCTAGATGATTTAATGCTATGTGTTATGTTGTAGGGAGTAGGCCTCAGTACATGCCAACAACACTGCTGAGATGACAACTTTGCAACGTATTGAAAGGCATCAGAGAAGCTCTTTGAATAATTATTGGGAAACTACCAttaaactaaaatgtatttaataaataaaatatgtaattaaatCTGTTTTGCAGAGGTCAGAGACTTGTAGGGTCTTCATTTGGAAGTGTTTTGGCCCTGCCTTCAGTGAAGGGGTAAAtgcatatgtaaatatttacttGTTGAATATGACTGGGTTTTGATAGCTGTCCCACTAGAAATGTATTGTTAGTTGTGTgtaaattattttgtatttaggatgtttttaactttttatttatgtgtCCAATGACGTTTAGTAGGC
>XM_039814878.1
CACCAACCTCCAGCCCAGTGGGTTTCTGGCAGCGCCTGGGTTAAACTTTAACAACATGGCCCCCATCAGTAACAACACAAACGGAACGGACAGAGGTGATAACTGCAGTGGAATCAAATCTGAAAGAAAGATGAGGAAACCTCTGGTCGAGAAGAAAAGAAGGGCTCGCATCAATGAAAGTTTACAAGAACTCAGAGTTCTCGTGGCGGATGCAGACTTACAATCAAAGATGGAGAATGCCGAAGTGCTGGAGATGACAGTGAAACGTGTGGAGAGAATCCTGCAAAACCGGGCTCAAGAAGTGGACGCCGTGAACCGGGAGGCCTGTGAGCGTTTTGCTGCAGGCTACATCCAGTGTATGCATGACGTTCACACTTTTGTGTCCAGCTGCCCGGGAATTGACCCAACATTATCCGCGGAGCTGTTGAACCACCTCCTGGAGAGCATGCCCCTAAACGACGAAGACCGCCTCCGGGTGATGCTGCCGGACACGTTTACAGAGTGCCCCGGCAGCAACAGCACTTGGTCCCTGTCTGAGAGCATGTACACGGCTCTAGTGTCCCCGGCCCCTTCCACCACCTCCACCGATGACCTCTGCTCTGACCTGGATGAGACGGACTCGGAGCAAAGTCATGTTTCTTCTTCGGAGGAGGCTGAAAGCCAGGATGTGTTGTGCTCGCCTTCCTTAACTTACTCCAAGTCAATGTGGAGACCATGGTAGATCATTTTAAAAAAGGAATAGCATGTTTTAAACCACGCTAGATGATTTAATGCTATGTGTTATGTTGTAGGGAGTAGGCCTCAGTACATGCCAACAACACTGCTGAGATGACAACTTTGCAACGTATTGAAAGGCATCAGAGAAGCTCTTTGAATAATTATTGGGAAACTACCAttaaactaaaatgtatttaataaataaaatatgtaattaaatCTGTTTTGCAGAGGTCA

Function

NR:

description
PREDICTED: transcription cofactor HES-6

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158169 True 1176 TUCP 0.46 4 23912664 23914498
XM_039814878.1 False 954 mRNA 0.48 4 23912771 23914295

Neighbor

gene id symbol gene type direction distance location
LOC120567818 gpr55,LOC103396173,LOC103366713 coding upstream 7135 23899208 ~ 23905529 (+)
snorc NA coding upstream 15753 23891144 ~ 23896911 (+)
gigyf2 gigyf2 coding upstream 21696 23870051 ~ 23890968 (+)
trnaw-cca_13 NA coding upstream 44339 23868254 ~ 23868325 (+)
glula LOC103366706,LOC100534445,LOC108239682 coding upstream 92223 23816040 ~ 23820441 (+)
clcn2a clcn2,LOC102213982,LOC102290034 coding downstream 49451 23963949 ~ 24005011 (+)
LOC120568612 NA coding downstream 140281 24054779 ~ 24057075 (+)
LOC120569088 NA coding downstream 169198 24083696 ~ 24089942 (+)
cdc20 cdc20,LOC102779045 coding downstream 223657 24138155 ~ 24142097 (+)
bokb LOC103360102,LOC100707238 coding downstream 237662 24152160 ~ 24160339 (+)
G117346 NA non-coding upstream 13752 23898650 ~ 23898912 (+)
G117344 NA non-coding upstream 15018 23897243 ~ 23897646 (+)
G117320 NA non-coding upstream 56133 23856129 ~ 23856531 (+)
G117315 NA non-coding upstream 63718 23848687 ~ 23848946 (+)
G117297 LOC104918287,LOC103479586,LOC107686770,LOC108443834,LOC107083372,LOC106929027,LOC108239658 non-coding upstream 166687 23742484 ~ 23745977 (+)
G117359 NA non-coding downstream 2260 23916758 ~ 23920029 (+)
G117364 NA non-coding downstream 15350 23929848 ~ 23933807 (+)
G117374 NA non-coding downstream 33428 23947926 ~ 23948202 (+)
G117385 NA non-coding downstream 67693 23982191 ~ 23982983 (+)
G117389 NA non-coding downstream 85356 23999854 ~ 24075315 (+)
G117353 LOC103366712 other upstream 4263 23905870 ~ 23908401 (+)
G117319 LOC101487892,LOC104941256 other upstream 57507 23850879 ~ 23855157 (+)
LOC120567964 dpp6,LOC100710983 other upstream 226860 23592732 ~ 23685804 (+)
kdsr kdsr,LOC102792240 other upstream 471821 23433625 ~ 23440843 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other upstream 1231371 22641510 ~ 22681293 (+)
G117400 LOC104965054 other downstream 107943 24022441 ~ 24023659 (+)
LOC120569114 NA other downstream 135266 24049764 ~ 24054704 (+)
LOC120568789 kiaa0040,LOC102782613 other downstream 655030 24569528 ~ 24578312 (+)
LOC120569045 cacybp other downstream 753381 24667879 ~ 24675754 (+)
selenot1a selenot,LOC103365166 other downstream 948498 24862996 ~ 24870087 (+)

Expression


Co-expression Network