G117476


Basic Information

Item Value
gene id G117476
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24150458 ~ 24150771 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU158338
GTAAAACTATTTATCATCAACACTACTTGCAAatattattgtgttttattaatatattgATAAGAGGCTGAATCTGTCCCAGGAGACAAACATGAAGAAATGACCACATCAGCTCAGaattatttaacccttgtgtggtgttcatatttttgttacacagccaatgttcccagctctggtggacccaccacattattaggcttttaaatcaatacagccataacaatttatgtaaaaacacttaacagatgtttactttagctcaattaccaatgatatatacatcatttatggttcatatttgccatttaccc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU158338 True 314 lncRNA 0.33 1 24150458 24150771

Neighbor

gene id symbol gene type direction distance location
cdc20 cdc20,LOC102779045 coding upstream 8361 24138155 ~ 24142097 (+)
LOC120569088 NA coding upstream 60516 24083696 ~ 24089942 (+)
LOC120568612 NA coding upstream 93383 24054779 ~ 24057075 (+)
clcn2a clcn2,LOC102213982,LOC102290034 coding upstream 145447 23963949 ~ 24005011 (+)
LOC120567818 gpr55,LOC103396173,LOC103366713 coding upstream 244929 23899208 ~ 23905529 (+)
bokb LOC103360102,LOC100707238 coding downstream 1389 24152160 ~ 24160339 (+)
kif1ab NA coding downstream 20274 24171045 ~ 24197651 (+)
espnlb NA coding downstream 49472 24200243 ~ 24209452 (+)
rab6bb rab6b,LOC104929189,LOC105028793,LOC104957876,LOC103360106,LOC100708038,LOC101156359,LOC106534664 coding downstream 58779 24209550 ~ 24216455 (+)
aire NA coding downstream 69466 24220237 ~ 24223598 (+)
G117389 NA non-coding upstream 75143 23999854 ~ 24075315 (+)
G117406 NA non-coding upstream 105974 24043969 ~ 24044484 (+)
G117405 NA non-coding upstream 106917 24036655 ~ 24043541 (+)
G117398 NA non-coding upstream 129403 24019654 ~ 24021055 (+)
G117385 NA non-coding upstream 167475 23982191 ~ 23982983 (+)
G117487 LOC104957881 non-coding downstream 14083 24164854 ~ 24169555 (+)
G117488 NA non-coding downstream 18897 24169668 ~ 24169953 (+)
G117523 NA non-coding downstream 106783 24257554 ~ 24258831 (+)
LOC120568139 NA non-coding downstream 186922 24337693 ~ 24339256 (+)
G117547 NA non-coding downstream 405648 24556419 ~ 24556657 (+)
LOC120569114 NA other upstream 95754 24049764 ~ 24054704 (+)
G117400 LOC104965054 other upstream 126799 24022441 ~ 24023659 (+)
hes6 LOC104918282,LOC104941260,LOC103366710 other upstream 235960 23912664 ~ 23914498 (+)
G117353 LOC103366712 other upstream 242057 23905870 ~ 23908401 (+)
G117319 LOC101487892,LOC104941256 other upstream 295301 23850879 ~ 23855157 (+)
LOC120568789 kiaa0040,LOC102782613 other downstream 418757 24569528 ~ 24578312 (+)
LOC120569045 cacybp other downstream 517108 24667879 ~ 24675754 (+)
selenot1a selenot,LOC103365166 other downstream 712225 24862996 ~ 24870087 (+)
G117664 NA other downstream 799797 24950568 ~ 24954247 (+)
fgf12a fgf12,LOC100711708,LOC108245531,LOC107083782,LOC107384013,LOC103396031,LOC103365152,LOC103148287,LOC101467833,LOC106535044,LOC102236041,LOC105935916 other downstream 836728 24987499 ~ 25044057 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G520222 NA non-coding CI01000364 null 425438 ~ 425708 (+)
mexican tetra (Astyanax mexicanus) G178611 NA non-coding NC_035916.1 CM008319.1 23447089 ~ 23475205 (+)