G117487 (LOC104957881)


Basic Information

Item Value
gene id G117487
gene name LOC104957881
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24164854 ~ 24169555 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU158349
AGCACACTTTATTGACATCTTTCAGTGCACCATATAGACCATATAACAATATCTGCTCCTGTATTTCAAAACTGTCCTACTTATACAAGAAAGGCACATGGCGTTATAGGTTTTATAAAATCACAGAAAGATTCCTGAACTTTATGTACTGTTCCAGGGGTCCGCATGTTGGGATCACTGAGTGTTTACTTTTTATTTCCTAATGAATAAGTACAGGGTGGGTGGGCAGGGAATCAGGCGTCTTAAGCCTTGCTCTTTTTGCAGTTCTTGAGAGCATCTGCCAGGGCATGTAGTGCCATGTCTGCATTAATCTTCTCGCAGTTGTATCCCATCAATCCGATCCTCATCACCTGGTGAAAAGAGAGGTAGACAGTGACTTAGCAGCATGATTTAGAAAGCTGTAACTATCAAAGTGATGATGTTTCTCTTGCTATAACGGTTGAAATTGGATATCTGATTGAATTAGTTCATTTATGTAAATTGTTATAGTGGGAATGAAGTTGGCTATTATTTCTTATAGAAACATATTATTCAATCCAGGACTAGCTCTATTTGTTAAGGTTTATTTTAGGGGAAATAATTCTCTTTTGAAAACATTACCTTCTGCTGCTAAAATGCTGAGACTGATGGTCACATCTATAATAGCTGATGACCAAAATGTTAAAGGCATATATTTCTCCACTGTACTTGGTTGTAATACCAGCAGCAACCCACCATGCCGATGGAAGGGCCTAGGCCTCCAGTCATCTCCATCTGATGGTGTTTCATGATATAGGACAGCAACTCCCTCCAGTTGTAGCCGTCCGGAATGGCAATGGTGGTGACGGAGGGGAGCCTCAAGTCCTGCAGGACATGTCACAACAGGGCAACACAATAACTCTGGGATGAAGAGCTTGAGGCCCAAGTCCTCCAGTCCTCTGTATAGGTAGGCTGCCACCTCCTTGTGTTTTTTCCAGGACTCCTCCAGCCCCTAGAGGGAGACAAAGATCGATGGAGGTACGTGAGGTACGTGAAAAACTACTACACTATTATAGAGGCAAACTCAGAGAGCTATGTTTCATTTTCAACACTTCCTCGCAATTCGATGGTGTTTTGAACAAAGACGTTGCCATATTGCTGCCAATAAAAGTGATTGGCATAATTGTAGCCAAAACAAAATCAAGAGTGTGCCCCCAGCACGGCCCACATTATGTACCAGTTGTATTAAGAAGGTTTTGACAAATGTAAATAATTGAATTGTTACTCTAGAAGTTGTAAATGTCTTTCAGTAAAGTATCTACAACAAGTTGTGAAATTATCCCCGACCTTCTCAGCAATAACTGCCAGACTCTCTCTCAGGGCAAAGAATCCAGACACTGGACCAGTGTGGTGGTATCTAAAACCCAGAGCAAACATGATTAAATATCCAGCACAGTGACACCCATAAAATTCTTTCTTTTCCAAAgcttgaataataataatagccaaTAATTTAAACATCTAATGTTTTTTAGTCTAGTTCTAACAGAGTTTAAGCAAGCTTAAGGTGGTATGAAGAGAGAGGATGAAATCAGTTGGCTGTAATGGACTTACACTCTGGCTGGTTGGCCATCACAACCCCAGTAGTTGGACAAATGAGTCATATCAAAGAGGTAGGATACAGGTTTTGTTTTCCTGTTAAACATCTTGTGCATGCTCTGTCATTAAAGGAGATAGGTGCTGTGCCAGGAGGTGCATTCAGAGCCTTCTGAGAGCCAGTGTACAGGATGTCAATATCTGGGAGCACAATGAGAGGCAGATTATACCACACGCAAGCACATGGTAGCAGGTAGCCATCGTTATTCATTAATCGTCTTACTTTGCTTGTCCATAAAAATTGGTGCTGCACCAAGAGATGCGACTGTGTCAACAAGGAAGAGGCAGTTATGTTTTCTGCAACGCGCTCTCCCCAGATTCCGTTAATGGCAACGAGCACGCTCTCTCCGGGCTCCACCGTATTGAACACCGCGCACTCCATGGCCGCGTGCCCGGAGCCGCTCATAGCTATAGTCATGTTGTTATCTGTCTGAAAGATGTACTGGATCCCTCTCTTGATGTCATTCATGATCTAAACATTTCTGGATGCATGTGACCAATTATCGGCCTGCCCTGTGCGGCTAAAATACGTGGAGGAACGTTTGAGGGTCCAGGTCCAAACAGGTAACGCAGTGGAGCTTCCAGCGGCCGGAGAATGCATGCTGGCGGCGGGATGGTGGCGGAGGAAATGGAGCGGTCCAGGCGCTGCAGCAGAGGCGCGCTCCTCGCGGCCAGAAGACTGTCGACGGCCGCTGCTACCGGCTGGGCGAGCAGCGCGCTCCGGCTAAACAAAGCCCGCTGCATCACAGCTGGTGTTCTTGTTCCCGAGAAGCGTGCACCGAGTGTTATCaccactgacagacagagagacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacccaaccacCAATACACACACTACAAACACCACAGAAAATGCCTCAATCTCATTGTCTAGTGTGCATAAGCATCATACATGCAAAGTGTAAAGTAAGCATTTATGGTAATTTCAGACTTTGTTCTGTTTGTTGTGCTTTCTTGTTTCAGATGTTTTTCTTGTCTCCATTCTACAAAATGAAATGTCACACAATGGGCTCAAAAGTTTTTACCCACAC

Function

NR:

description
PREDICTED: serine--pyruvate aminotransferase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158349 True 2713 lncRNA 0.44 6 24164854 24169555

Neighbor

gene id symbol gene type direction distance location
bokb LOC103360102,LOC100707238 coding upstream 4515 24152160 ~ 24160339 (+)
cdc20 cdc20,LOC102779045 coding upstream 22757 24138155 ~ 24142097 (+)
LOC120569088 NA coding upstream 74912 24083696 ~ 24089942 (+)
LOC120568612 NA coding upstream 107779 24054779 ~ 24057075 (+)
clcn2a clcn2,LOC102213982,LOC102290034 coding upstream 159843 23963949 ~ 24005011 (+)
kif1ab NA coding downstream 1490 24171045 ~ 24197651 (+)
espnlb NA coding downstream 30688 24200243 ~ 24209452 (+)
rab6bb rab6b,LOC104929189,LOC105028793,LOC104957876,LOC103360106,LOC100708038,LOC101156359,LOC106534664 coding downstream 39995 24209550 ~ 24216455 (+)
aire NA coding downstream 50682 24220237 ~ 24223598 (+)
amotl2b NA coding downstream 71151 24240706 ~ 24247620 (+)
G117476 NA non-coding upstream 14083 24150458 ~ 24150771 (+)
G117389 NA non-coding upstream 89539 23999854 ~ 24075315 (+)
G117406 NA non-coding upstream 120370 24043969 ~ 24044484 (+)
G117405 NA non-coding upstream 121313 24036655 ~ 24043541 (+)
G117398 NA non-coding upstream 143799 24019654 ~ 24021055 (+)
G117488 NA non-coding downstream 113 24169668 ~ 24169953 (+)
G117523 NA non-coding downstream 87999 24257554 ~ 24258831 (+)
LOC120568139 NA non-coding downstream 168138 24337693 ~ 24339256 (+)
G117547 NA non-coding downstream 386864 24556419 ~ 24556657 (+)
G117632 NA non-coding downstream 668401 24837956 ~ 24838229 (+)
LOC120569114 NA other upstream 110150 24049764 ~ 24054704 (+)
G117400 LOC104965054 other upstream 141195 24022441 ~ 24023659 (+)
hes6 LOC104918282,LOC104941260,LOC103366710 other upstream 250356 23912664 ~ 23914498 (+)
G117353 LOC103366712 other upstream 256453 23905870 ~ 23908401 (+)
G117319 LOC101487892,LOC104941256 other upstream 309697 23850879 ~ 23855157 (+)
LOC120568789 kiaa0040,LOC102782613 other downstream 399973 24569528 ~ 24578312 (+)
LOC120569045 cacybp other downstream 498324 24667879 ~ 24675754 (+)
selenot1a selenot,LOC103365166 other downstream 693441 24862996 ~ 24870087 (+)
G117664 NA other downstream 781013 24950568 ~ 24954247 (+)
fgf12a fgf12,LOC100711708,LOC108245531,LOC107083782,LOC107384013,LOC103396031,LOC103365152,LOC103148287,LOC101467833,LOC106535044,LOC102236041,LOC105935916 other downstream 817944 24987499 ~ 25044057 (+)

Expression


Co-expression Network