G117523


Basic Information

Item Value
gene id G117523
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24257554 ~ 24258831 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU158403
acaagggttaaaacatgATATATAGGTCGGACACCTAAGTAGTTCCAGTCAAACTGTCTGTTCATCATTCTAAATGAATGTGTGAAATGAATCTCTTAAATCTTGATATCGATTCTTGGACAGTGATACGGCTGGCTTGTCTTGACGTTAAACATCAAggcatactgtcaaattatattCACTGTTGTCCACTGTATGTACACTTGACAACCATACACAATGTTACTGACTTTTAATCTTGCTAGGATAACTTTAGCGTTCTGGCTCACAGCTGAGCCAAAGCATAAAGGTTATAATAAGAACCCTTATAGGTTGGGAAGGgttgtatgtattgtattgtatggaTGAGTGTCACCAGAGAAACATTTGTATTGCAAAACATATGAAAATAtaaattcttaaaaaataatttggcAATCCATTCATTAATTCCTGATAATAGACACATCATGGAGCCTTAACCCCCAATTAAACAATTGTTAAAAGAAAGGAGCCATATGAAGTGGACGTTCATACACAACTGGACTGATTTCCTAGGAATTACATATTTTGACAGACAAAGCATGTACACCTAGGCCAGGGTGTAAGTCAACTTTCATTGCCTTTTACCATTAAGAGAATCTGTTGCTTTGGttttaaaatacttttgaaTCAGGTTACTCTGTGTGTATACTATGGATCAAAGTGGATAAAAGTATAATAAACAAgtgcctgtgttttttttccccgttGTAAATTTCCAATACTTATACAACTTTTTGATCTGTAAACTGCTTAAAAAGTTAGTCACACATGCTTCTGAGTGGACAGATTTACTTCCAGTGTACATCTAACCGGTCGTCTTTGGTTCTCATCTTGGTTGGAAATGGTTGGGCCATAGTTCAATATAAGAATTAATCGTCTTTCAATGGAATCGTATTGAGATATTGTGATATACAATTATGTTATCTACATTGTGAATACTATATAAACAAGCACATACTAACTCAAATTTCTTAGAAAATCTGATGTGGGATATTTTGAGGAAATATAATTTGAAGattgtggttttgtttttatatcaagatgtgtgcatgcatgcaaacaTACTTGGTGTATAGCTGTAATGTTGTACTAAAAGTCTtaataaaatcagaaaacagtaCTGTTTTTTTGTCAAGTATTATATAGGTAGCCTATACAAAAAAGGGTTCACCGCTATTTATGAAATAACCAGAAAACATGCTATAGCGTTATCGTGATATGCAATGACCTATATCAGGAAAAAATATGTTGGGC

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU158403 True 1278 lncRNA 0.34 1 24257554 24258831

Neighbor

gene id symbol gene type direction distance location
LOC120568200 NA coding upstream 219 24253388 ~ 24257335 (+)
amotl2b NA coding upstream 9934 24240706 ~ 24247620 (+)
aire NA coding upstream 33956 24220237 ~ 24223598 (+)
rab6bb rab6b,LOC104929189,LOC105028793,LOC104957876,LOC103360106,LOC100708038,LOC101156359,LOC106534664 coding upstream 41099 24209550 ~ 24216455 (+)
espnlb NA coding upstream 48102 24200243 ~ 24209452 (+)
LOC120568201 NA coding downstream 632 24259463 ~ 24267286 (+)
LOC120568202 NA coding downstream 10853 24269684 ~ 24278078 (+)
tnr tnr coding downstream 115458 24374289 ~ 24545760 (+)
mrps14 mrps14,LOC101476193 coding downstream 401301 24660132 ~ 24662064 (+)
plk3 plk3 coding downstream 418152 24676983 ~ 24685579 (+)
G117488 NA non-coding upstream 87601 24169668 ~ 24169953 (+)
G117487 LOC104957881 non-coding upstream 87999 24164854 ~ 24169555 (+)
G117476 NA non-coding upstream 106783 24150458 ~ 24150771 (+)
G117406 NA non-coding upstream 213070 24043969 ~ 24044484 (+)
G117405 NA non-coding upstream 214013 24036655 ~ 24043541 (+)
LOC120568139 NA non-coding downstream 78862 24337693 ~ 24339256 (+)
G117547 NA non-coding downstream 297588 24556419 ~ 24556657 (+)
G117632 NA non-coding downstream 579125 24837956 ~ 24838229 (+)
G117704 NA non-coding downstream 859400 25118231 ~ 25118502 (+)
LOC120568228 NA non-coding downstream 867000 25125831 ~ 25130929 (+)
LOC120569114 NA other upstream 202850 24049764 ~ 24054704 (+)
G117400 LOC104965054 other upstream 233895 24022441 ~ 24023659 (+)
hes6 LOC104918282,LOC104941260,LOC103366710 other upstream 343056 23912664 ~ 23914498 (+)
G117353 LOC103366712 other upstream 349153 23905870 ~ 23908401 (+)
G117319 LOC101487892,LOC104941256 other upstream 402397 23850879 ~ 23855157 (+)
LOC120568789 kiaa0040,LOC102782613 other downstream 310697 24569528 ~ 24578312 (+)
LOC120569045 cacybp other downstream 409048 24667879 ~ 24675754 (+)
selenot1a selenot,LOC103365166 other downstream 604165 24862996 ~ 24870087 (+)
G117664 NA other downstream 691737 24950568 ~ 24954247 (+)
fgf12a fgf12,LOC100711708,LOC108245531,LOC107083782,LOC107384013,LOC103396031,LOC103365152,LOC103148287,LOC101467833,LOC106535044,LOC102236041,LOC105935916 other downstream 728668 24987499 ~ 25044057 (+)

Expression


Co-expression Network