selenot1a (selenot,LOC103365166)


Basic Information

Item Value
gene id selenot1a
gene name selenot,LOC103365166
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24862996 ~ 24870087 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU158548
tGAGATTAACCTGCGGCCTGCCTCTCTATCTAGTGAGGAAACACACCACGGAACGGTTGGCGATGAAGTTGTTGCGTTTTTCGCTCCTTGTTTTGGGAGTATTCTCGCTGTGCTGCGCCACGTCTGGTGACAGCAGCGGCGTGAAGAAGATGAAAATGCAGTTTGCTACGGGACCCCTTCTAAAATTTCAAATTTGTATTTCCTGAGGGTACAAGCGGGTGTTTGAAGAGTACACGCAGGCCTTGTACCAGCGGTACCCAGACATCCGTATTGAAGGGGAGAATTATCTTCCTGTGCCCCTCTATAGaCACGTTGCTTCCTTCCTGTCTGTGTTCAAACTGTTGGTGATTGGACTGATTATTATCGGCAGGGACCCATTCGCCCTTTTTGGTATGCAAGCCCCAGGCATCTGGGAGTGGGGTCAGGGAAATAAGATATATGCCTGCATGATGGTGTTCTTCTTCAGCAATATGATTGAAAACCAGTGTATGTCTACAGGAGCTTTTGAAATCACATTAAATGATGTCCCAGTGTGGTCAAAACTAGAGTCGGGTCACCTTCCCTCCATGCAGCAGCTTGTGCAAATTCTGGACAACGAGATGAAGATGAATGTTCACATGAACACAGGATCACACCACCACTCCTAACCCTACTCGTCACATCCTGGCTCGAGCTAAAAGCCCCTCCATGTTTGAGGTGGGTTTCTCATTGGGCTGTGAAGTGATGTTTATGAAGGTCTGCGCTGAAGGCAGGAAGACTGCTAGCACAGACTGGATGCCCCCATCAATCTTCACCATGCCCCTTGGAGACGTCCCGCCCCTGACACCAGAGTGGGATCCATGGCAACAGTGCCGGCCATTAGTTTGTCGTTTTATtgtactattactactactgcAGATTTCATCCAGGTGAAGGAGAGATTTAAGGAGAGATTTAACATGTATTCCTACAACTTGCTGCATATGATTTATCCATGTGAATTAAAGTGTAATTTGTACTACTGAGCCACATGTAGAATTAAGTTTATTGTTCTAAACATAGCTTAGTCGTGTAGAAAATGCAACATTTACAATCACTGTTGTGAAAATAACATTGGGAAATTTTGTCTTTATGATTTCTGAATAATTTTTATATTTCCATAACCTTAAGGAAGCTAATAAGATTAATAAAACGTATTGTAACTATTCAACTGCGAGGCTGTGGTGTGGTGTCGAGGTTTACGGATTGATGTGGTGGAATCGGCTGTCGGAAATGATATCCTAAGTGAGTTTTAGTCAGTTAAATTACCGGAGAGGAAAAGTAGGAAATCTGACTATCGTGGAGATATTGCCGTTTTCTTCCGTAAAGCAGGCGGCCTGCTTGGTTCATGAGTGGACATCTCTTAGCCATCTGCTCAACCTTAGGAAGACTTGACGGTTTACACTGATTTCATTAGGAGAAACAAATCAGATTAAGTGCTAATACAATGTAAGACTAAAAGTTTGTGACGTCATAGCGCCATACACACTTTGAATTTTGGATATTCCCGACAGTAAAGTCAAATCACTTCTATGAGTTCTAGTAGTAAGTGAAGAAAATTTAGGGGACAAAATTACAGCTTTTATTTGATACTTTTATTTGTTGGCAATATAATCCagtatgcacaaaaaaactgATTACCTTTTGAGCTCATTCCCTATGGgttaagattttatttttattgtttctgtGGTCTCAAAATAGCATCCAGGAGTGAAAACGGTGCAGGATTGTGATGTAAATGCCATCATACCTCCTGAAAAGAGCCATTAAGTTGTGTAGAAAAACATTTGCTATAATGCCAATGTTTGTTCCTTTATTTTGTCCCTCTGATTGCCTTTTA
>XM_039815588.1
CCAACCagtatgtagctagctagctacagattGAGATTAACCTGCGGCCTGCCTCTCTATCTAGTGAGGAAACACACCACGGAACGGTTGGCGATGAAGTTGTTGCGTTTTTCGCTCCTTGTTTTGGGAGTATTCTCGCTGTGCTGCGCCACGTCTGGTGACAGCAGCGGCGTGAAGAAGATGAAAATGCAGTTTGCTACGGGACCCCTTCTAAAATTTCAAATTTGTATTTCCTGAGGGTACAAGCGGGTGTTTGAAGAGTACACGCAGGCCTTGTACCAGCGGTACCCAGACATCCGTATTGAAGGGGAGAATTATCTTCCTGTGCCCCTCTATAGaCACGTTGCTTCCTTCCTGTCTGTGTTCAAACTGTTGGTGATTGGACTGATTATTATCGGCAGGGACCCATTCGCCCTTTTTGGTATGCAAGCCCCAGGCATCTGGGAGTGGGGTCAGGGAAATAAGATATATGCCTGCATGATGGTGTTCTTCTTCAGCAATATGATTGAAAACCAGTGTATGTCTACAGGAGCTTTTGAAATCACATTAAATGATGTCCCAGTGTGGTCAAAACTAGAGTCGGGTCACCTTCCCTCCATGCAGCAGCTTGTGCAAATTCTGGACAACGAGATGAAGATGAATGTTCACATGAACACAGGATCACACCACCACTCCTAACCCTACTCGTCACATCCTGGCTCGAGCTAAAAGCCCCTCCATGTTTGAGGTGGGTTTCTCATTGGGCTGTGAAGTGATGTTTATGAAGGTCTGCGCTGAAGGCAGGAAGACTGCTAGCACAGACTGGATGCCCCCATCAATCTTCACCATGCCCCTTGGAGACGTCCCGCCCCTGACACCAGAGTGGGATCCATGGCAACAGTGCCGGCCATTAGTTTGTCGTTTTATtgtactattactactactgcAGATTTCATCCAGGTGAAGGAGAGATTTAAGGAGAGATTTAACATGTATTCCTACAACTTGCTGCATATGATTTATCCATGTGAATTAAAGTGTAATTTGTACTACTGAGCCACATGTAGAATTAAGTTTATTGTTCTAAACATAGCTTAGTCGTGTAGAAAATGCAACATTTACAATCACTGTTGTGAAAATAACATTGGGAAATTTTGTCTTTATGATTTCTGAATAATTTTTATATTTCCATAACCTTAAGGAAGCTAATAAGATTAATAAAACGTATTGTAACTATTCAA

Function

symbol description
selenot Predicted to enable thioredoxin-disulfide reductase activity. Involved in cell redox homeostasis. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane.

NR:

description
PREDICTED: selenoprotein T

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0008430 selenium binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158548 True 1861 lncRNA 0.42 6 24863027 24870087
XM_039815588.1 False 1220 mRNA 0.44 6 24862996 24869415
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Neighbor

gene id symbol gene type direction distance location
kif2c kif2c,LOC101470919 coding upstream 1051 24853794 ~ 24861945 (+)
ptch2 ptch2 coding upstream 25302 24808244 ~ 24837694 (+)
eif2b3 eif2b3 coding upstream 65748 24759165 ~ 24797248 (+)
plk3 plk3 coding upstream 177417 24676983 ~ 24685579 (+)
mrps14 mrps14,LOC101476193 coding upstream 200932 24660132 ~ 24662064 (+)
LOC120568223 NA coding downstream 4914 24875001 ~ 24876959 (+)
LOC120568221 NA coding downstream 17674 24887761 ~ 24892439 (+)
zgc:153615 schip1,LOC104951462,LOC103396042,LOC100710109,LOC101472499 coding downstream 24468 24894555 ~ 24906946 (+)
LOC120568308 NA coding downstream 37750 24907837 ~ 24911335 (+)
LOC120568131 otol1,LOC104951468 coding downstream 66872 24936959 ~ 24939879 (+)
G117632 NA non-coding upstream 24767 24837956 ~ 24838229 (+)
G117547 NA non-coding upstream 306339 24556419 ~ 24556657 (+)
LOC120568139 NA non-coding upstream 523740 24337693 ~ 24339256 (+)
G117523 NA non-coding upstream 604165 24257554 ~ 24258831 (+)
G117488 NA non-coding upstream 693043 24169668 ~ 24169953 (+)
G117704 NA non-coding downstream 248144 25118231 ~ 25118502 (+)
LOC120568228 NA non-coding downstream 255744 25125831 ~ 25130929 (+)
LOC120568901 NA non-coding downstream 912088 25782175 ~ 25793191 (+)
LOC120568900 NA non-coding downstream 1002242 25872329 ~ 25873402 (+)
LOC120568898 NA non-coding downstream 1010417 25880504 ~ 25888841 (+)
LOC120569045 cacybp other upstream 187242 24667879 ~ 24675754 (+)
LOC120568789 kiaa0040,LOC102782613 other upstream 284684 24569528 ~ 24578312 (+)
LOC120569114 NA other upstream 808292 24049764 ~ 24054704 (+)
G117400 LOC104965054 other upstream 839337 24022441 ~ 24023659 (+)
hes6 LOC104918282,LOC104941260,LOC103366710 other upstream 948498 23912664 ~ 23914498 (+)
G117664 NA other downstream 80481 24950568 ~ 24954247 (+)
fgf12a fgf12,LOC100711708,LOC108245531,LOC107083782,LOC107384013,LOC103396031,LOC103365152,LOC103148287,LOC101467833,LOC106535044,LOC102236041,LOC105935916 other downstream 117412 24987499 ~ 25044057 (+)
LOC120568894 LOC102789372,LOC104966552 other downstream 873240 25743327 ~ 25773468 (+)
LOC120568895 NA other downstream 903690 25773777 ~ 25793954 (+)
G117829 NA other downstream 959677 25829764 ~ 25830695 (+)

Expression

selenot1a(selenot,LOC103365166) Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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selenot1a(selenot,LOC103365166) Expression in each Bioproject

Bar chart with 8 bars.
selenot1a(selenot,LOC103365166) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1250.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016175 selenot1a coding NC_007113.7 CM002886.2 9684305 ~ 9696283 (-)
grasscarp (Ctenopharyngodon idella) G23315 NA unknown CI01000003 null 1863892 ~ 1866921 (+)
rainbow trout (Oncorhynchus mykiss) G2125560 LOC106599070 non-coding NC_048592.1 CM023246.2 29265047 ~ 29269424 (+)
eurasian perch (Perca fluviatilis) G138684 NA non-coding NC_053124.1 CM020921.1 36184037 ~ 36193304 (+)
mexican tetra (Astyanax mexicanus) G52655 NA non-coding NC_035902.1 CM008305.1 16622749 ~ 16677399 (-)