G117993


Basic Information

Item Value
gene id G117993
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26193007 ~ 26194884 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU159050
CAAGTtgagtttttctttgtttattatAAGAATATTGATTATATTTTTGGTTTGCACTGAAACATGAAAATACAATGTTTGGGTAACCTTCTACACTAATTTGGTTCAACAGGCATCACAACCACTCAGTCCAAACACTTCCTCTCATCCAATCATCCACACATTAACATAATGCAAAGCTCCACATTAAACAGAATTACCAACACTACATCAgcctacaaaacacacacacacacacacacacacacacacacacacacacccacacacacacacacacactcaaattcATTAACGTTTATGATGACTACATCCACTATCCACACAtattcatacacacactcactactGTTAGGGCATTGCTGTTCGCAGTTATTGTTattagataaaaaaataaaacaggatttGAAAACACCATCCATTTCATATTGGTCACATACACTGTGTACATCACATGACTGATACATTATGGTTGTTAACCAGAACACCTAAAAGCACTTTAAACTGGCTATCAAACCTGTCTCATGAAGGAGAGAAGATGCATACTGAGAGTGAGGTCTTCAATTTCGAATGACGGCATGATTTGTTCATTAAACTATATAAGCTCTGTCTCGTTAAGAGTCCGACAAGGGATTTTTCACAACCCCCTTCAGAAGACGCAAGTGATTCATGTTTCTTATTATTAGGTTGCAGACAGATTATAAAGAGAGCCTTACAAAACAGCGGTATTGTAAGAGCCATAATTACCTCGGCCAGGTAACACTGAAATACATCAAAGCGTATTCGCAGTGACAAAGCATTGGTTGCCATGGCATCGACACTTTTGGAAGAATCTCTCCGGTTGCTTTGTCCAAAGTACCCGCCAGACATTACTATTAACGTGATGGATAGAGAACTCTAATACTCAGGTGTTCCTTAGCGTTTCCAACTTGCTGTTCGCCTCTGCTGGTGAACTGAACATGTGCCATCAGGGGGAAGAATGAAGGAGGGGACAACTGTctgattattataataattattattatttttttagccCTGTATGTCACTCAGGCTTCATTTCCCTGATGTCTAGCAGGAAACACTTCATCATTAAAATAATCTTGTTATGAGGTAAACGGGAGCACAACGGCCTCTCAAAATCAAACAACACGAGTCCCACAATGCTTCTTCTCGATACATTAGGACTAAAACGTTACGATATACCCAGAGTAAGAGAAACATTTGTTATTCCGCTGCTGTGCGGCTGCTGTGAGAAGCAAGCCGAGCCCTTCTATTATAAAGTTAATCAATACAGTACATTAGTTATTACTGTGCAACCTGAGGCAACAGGACTACATCCAGTGGTGAATATTCACACAGTCAGCTCACAGACTCACAACAGTCCTCACATCTCAGTATGTGTCGATTACCAGTCAAAGTCATACTTGTTATGCCTCAATTGTCCTTAGACAGGTAAcccatgtgtgtgttggtgaggaAGTCACAGGTGGGGATGCTACTGACCGCCTGGTGGATGTTCATGGCTGTGATCTCTCTCGGAGTCCTGCAAAACCCAATGTTACAAGGTTAGGATTTTTGGAGCATGGCTCCACTCAGGAAATATGTTTCAGTCTGCCCGGGACATCACTGGTTGGCATTGAATATTCAGGACTGTTTGTCATTAACTGCTTTGTTGAATATTCAGCTCTGAATCAATGCATTCTGGGGTCTCTTATATCAGTTCAGTGCCCCGCTGTCTTACATCATGCAAATGGCACAAAGCGCACACCATTTTTACTGAAGCATagaatgacaaaaacatcacacaaaacaaaaatatgcaaAGATTTCTTAAGAGCACAAAACACACTCTGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159050 True 1856 lncRNA 0.40 2 26193007 26194884

Neighbor

gene id symbol gene type direction distance location
LOC120567824 LOC106676181,LOC105890570,LOC105912786,LOC106632393 coding downstream 134435 26052099 ~ 26058572 (-)
LOC120568966 LOC104919207,LOC103356876,LOC108245539 coding downstream 204060 25972731 ~ 25988947 (-)
LOC120568965 LOC104919208,LOC101171526,LOC104966176,LOC103396005,LOC101079252 coding downstream 224587 25963373 ~ 25968420 (-)
pax3a LOC103356872 coding downstream 275234 25895638 ~ 25917773 (-)
LOC120568225 LOC103359193 coding downstream 1057048 25114378 ~ 25135959 (-)
map6d1 NA coding upstream 959 26195843 ~ 26203560 (-)
mul1a mul1 coding upstream 130604 26325488 ~ 26330262 (-)
vwa5b2 vwa5b2,LOC104957800 coding upstream 139556 26334440 ~ 26348151 (-)
eif4e2 eif4e2,LOC102778094 coding upstream 198005 26392889 ~ 26400884 (-)
capn10 capn10 coding upstream 206098 26400982 ~ 26410408 (-)
G117957 NA non-coding downstream 90918 26097593 ~ 26102089 (-)
LOC120567720 NA non-coding downstream 106663 26064589 ~ 26086344 (-)
G117899 LOC103356880,LOC101482764,LOC104966182,LOC107087304 non-coding downstream 141929 26048930 ~ 26051078 (-)
LOC120568967 NA non-coding downstream 200798 25989412 ~ 25992209 (-)
G117890 acsl3,LOC102195906,LOC108245538,LOC100696941,LOC102792450,LOC103356873 non-coding downstream 254497 25937605 ~ 25938510 (-)
G117994 NA non-coding upstream 15465 26210349 ~ 26210668 (-)
G117995 NA non-coding upstream 16624 26211508 ~ 26211748 (-)
G118002 NA non-coding upstream 113903 26308787 ~ 26309326 (-)
LOC120569074 NA non-coding upstream 226566 26421450 ~ 26426798 (-)
G118075 NA non-coding upstream 279003 26473887 ~ 26474956 (-)
G117732 NA other downstream 1269689 24922203 ~ 24923318 (-)
G117560 NA other downstream 1656511 24499380 ~ 24536496 (-)
LOC120568990 LOC101487892,LOC104941256 other downstream 2336386 23851073 ~ 23856621 (-)
LOC120568062 LOC108239646,LOC104957657,LOC101467149,LOC102793932,LOC103364894 other downstream 2701395 23468620 ~ 23491612 (-)
G117259 vps4b other downstream 2762015 23430366 ~ 23430992 (-)
camk2n1a camk2n2 other upstream 120886 26315770 ~ 26319595 (-)
G118175 NA other upstream 466737 26661621 ~ 26665952 (-)
cirbpa cirbp other upstream 624954 26819838 ~ 26824570 (-)
LOC120568986 epha4,LOC100711706 other upstream 1448443 27643327 ~ 27675360 (-)
G118524 NA other upstream 1518583 27713467 ~ 27718759 (-)

Expression


Co-expression Network