LOC120569009


Basic Information

Item Value
gene id LOC120569009
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26743741 ~ 26763260 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU159236
GCATGTGTGAGGGAGAGGACACATGCGAGTCTATAGAGAGATAGGACACTTTGTAGCTTGAATACTCTGCTCTTTTACACCATTTTCTCTCATCGGGTGCGATCAGACACACAGGCTCTGATAACACGGAAAAATCCAAGGCGGAATTTGAAATAGTTGGAGGATATTGACTGTAGTGGAGTGGAGTTATAGCCTGATGTGCAAGAAAATGCCGCCAATGTCAGCCCTGAAGTTTGCGTCAACTCCCAATGAGAACAAATTGCCACCAGACAGGATGAGGAGCATCAGTCAGCCTGAGATGGAAACACGGGTGGGTGGTTGGAAGGCTGGATAAAGGCTGGTAGATGACTGAACTCAGAGACCCGGCGCAGCTCATCATCATTGCCATGGGCTctcgtcttcctcctctcctcctgtggCCCATACCTCCATCCAGGGGTGCAGCAGACCAATGTGAAGCCCAGGCGGGGAGCTAGTGAGTGGGCTGGGAAAGATGGAGAAGGTCCCTGAAGGCTCGAAGCACCTCTGGAGCTACCGGCATGCAGGAGAAATCAATATAAAAACACAGAGCACAGCTCTGAGTGGGGCTTCCTGTGTTAGTCTGTGGCCTAGGGGCCCGCAGACCTCCAAAGGACAGGCCCTGTGTGGCCCTCTCAGCTGCAGCCCTGGCTCCTCAGACTGGACCTCAGTCCCAATCTTCACTGGCTGTGTGTGGTTCTGCTGAAGGGGATCTCTCCCCAAATAATATCCAGAATGTTGAGGGACCGCCGACAGGGATATTCCTTTctcttgatttttttccccccttcatAAGATTGACATATCCCCCACCTTGTGCCTCCggctgtttaaaaaaacagtttggGAGTGCTGCTTTTGACTTACTCTCCAAGCTCAACTCGCCCGTTGTTTATTCCCCAACCAGTTTTTACATTTGACAAAGAGACAGTACcgtctttattttctcttccACTCCTGGCTTGCTGTTACTATGTTGAGCTGTAACATGTGTCTGTTAAAACCGAAAAGATTACTGGCACATGAAGTatgatcatcttttttttttttttctccgtgaTGTCTGTTATTCAATTCCAGACcgttaaagacaaaaaaaattgactGAATAAAGAGGGAAAAAGATGGCAGAGCAGAGAGATTTCCCACCTTGTAGTGGAGATGGCAAAATGATTGGTGACGGTGCAAAATCATTGATTGGCTGAACAACTTTTGACTCAAAGAAAAGGATTTCGGGCCCAGATTGGACTGGACTCATTTAAccatttttgttgattttttttgctGAATAATTAAAGTTTCtgacattaaacattttacaaTGGACTGTCCCCTACTTtgtctctgaacacacacacacacacacacacacacgtaatagTGACACTACTCTATAAATCCAAGGAAAAGACACTAACAAAGAGACTTTGAAAAGGATTTTCCTTTCACCAGCTGTACCTTAAGATGTGTTTTTCCTGTTACCAACAGCACCTGATGTTTGTGGGTTAATAATTCATATATTcaaatgattttatttttctaaatatagGAATGATGATGCTAATTGATGTTAGCTGATATCTGATTAAATACATCCATGCCAGGCTGTCCTGTCTATCCTGTTGTgcgttttggaaaagtcattgTGGGTGTGGaagtgtttttttatgatttgattttttattaaaagtccCAGCGTACACTTCATACTGTGTCTCAGTGTATTGAATCTGATTCAGCTGAATGGAATCTGTTGATGAACACCCTGAGGTGTAATTTACGTTGCTGTacaactttgtgtgtgtatattgggTGAATCTATATGTGGTCAATAAAGAGAACATCGACTTTGAACATTTTTCTCCAGTg
>XR_005640824.1
TGCACTTGTCAGTCGCAGCTCGCATGTGTGAGGGAGAGGACACATGCGAGTCTATAGAGAGATAGGACACTTTGTAGCTTGAATACTCTGCTCTTTTACACCATTTTCTCTCATCGGGTGCGATCAGACACACAGGCTCTGATAACACGGAAAAATCCAAGGCGGAATTTGAAATAGTTGGAGGATATTGACTGTAGTGGAGTGGAGTTATAGCCTGATGTGCAAGAAAATGCCGCCAATGTCAGCCCTGAAGTTTGCGTCAACTCCCAATGAGAACAAATTGCCACCAGACAGGATGAGGAGCATCAGTCAGCCTGAGATGGAAACACGGGTGGGTGGTTGGAAGGCTGGATAAAGGCTGGTAGATGACTGAACTCAGAGACCCGGCGCAGCTCATCATCATTGCCATGGGCTctcgtcttcctcctctcctcctgtggCCCATACCTCCATCCAGGGGTGCAGCAGACCAATGTGAAGCCCAGGCGGGGAGCTAGTGAGTGGGCTGGGAAAGATGGAGAAGGTCCCTGAAGGCTCGAAGCACCTCTGGAGCTACCGGCATGCAGGAGAAATCAATATAAAAACACAGAGCACAGCTCTGAGTGGGGCTTCCTGTGTTAGTCTGTGGCCTAGGGGCCCGCAGACCTCCAAAGGACAGGCCCTGTGTGGCCCTCTCAGCTGCAGCCCTGGCTCCTCAGACTGGACCTCAGTCCCAATCTTCACTGGCTGTGTGTGGTTCTGCTGAAGGGGATCTCTCCCCAAATAATATCCAGAATGTTGAGGGACCGCCGACAGGGATATTCCTTTctcttgatttttttccccccttcatAAGATTGACATATCCCCCACCTTGTGCCTCCggctgtttaaaaaaacagtttggGAGTGCTGCTTTTGACTTACTCTCCAAGCTCAACTCGCCCGTTGTTTATTCCCCAACCAGTTTTTACATTTGACAAAGAGACAGTACcgtctttattttctcttccACTCCTGGCTTGCTGTTACTATGTTGAGCTGTAACATGTGTCTGTTAAAACCGAAAAGATTACTGGCACATGAAGTatgatcatcttttttttttttttctccgtgaTGTCTGTTATTCAATTCCAGACcgttaaagacaaaaaaaattgactGAATAAAGAGGGAAAAAGATGGCAGAGCAGAGAGATTTCCCACCTTGTAGTGGAGATGGCAAAATG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159236 True 1887 lncRNA 0.44 4 26743762 26763260
XR_005640824.1 False 1211 lncRNA 0.49 3 26743741 26754418

Neighbor

gene id symbol gene type direction distance location
zgc:85843 tm6sf2,LOC104924838,LOC102294137,LOC102201647 coding upstream 71483 26666504 ~ 26672258 (+)
LOC120568699 slc25a24,LOC104964315,LOC103357622 coding upstream 155170 26580603 ~ 26588571 (+)
LOC120568740 NA coding upstream 178096 26559608 ~ 26565645 (+)
LOC120567674 NA coding upstream 184100 26554070 ~ 26559641 (+)
LOC120567673 NA coding upstream 190660 26534496 ~ 26553081 (+)
LOC120569005 LOC106935698,LOC103153539 coding downstream 28942 26792202 ~ 26813425 (+)
ndufa13 ndufa13,LOC102786334 coding downstream 52424 26815684 ~ 26819017 (+)
LOC120567603 LOC103357602,LOC108239446,LOC104948981,LOC105934574 coding downstream 127675 26890935 ~ 26899765 (+)
LOC120568413 LOC107384102,LOC105934594,LOC104929657,LOC103366675,LOC108239475,LOC103395958,LOC102222760 coding downstream 195406 26958666 ~ 26963795 (+)
sf3a2 sf3a2 coding downstream 229943 26993203 ~ 26997296 (+)
G118115 NA non-coding upstream 69290 26602656 ~ 26674451 (+)
G118135 NA non-coding upstream 78897 26662282 ~ 26664844 (+)
G118098 NA non-coding upstream 138657 26548656 ~ 26605084 (+)
G118095 NA non-coding upstream 142332 26532166 ~ 26601409 (+)
G118009 NA non-coding upstream 429111 26314265 ~ 26314630 (+)
LOC120569008 NA non-coding downstream 18107 26781367 ~ 26784859 (+)
G118164 NA non-coding downstream 57983 26821243 ~ 26824078 (+)
G118263 NA non-coding downstream 205244 26968504 ~ 26968990 (+)
G118265 NA non-coding downstream 213038 26976298 ~ 27055691 (+)
LOC120568996 NA non-coding downstream 256586 27019846 ~ 27021109 (+)
prkab2 prkab2,LOC101470867,LOC107384083,LOC102226598 other upstream 143669 26590782 ~ 26600072 (+)
wdr47a wdr47,LOC102290984 other upstream 246932 26421454 ~ 26496809 (+)
ccl20a.3 NA other upstream 325733 26416508 ~ 26418008 (+)
G118011 eif4e2 other upstream 341663 26395426 ~ 26402078 (+)
ece2a ece2,LOC103356888 other upstream 434194 26217998 ~ 26309547 (+)
G118149 NA other downstream 2232 26765492 ~ 26769911 (+)
LOC120567599 LOC101062208 other downstream 75918 26839178 ~ 26857394 (+)
LOC120568791 LOC103357601 other downstream 115295 26878555 ~ 26938882 (+)
G118234 sugp1 other downstream 120299 26883559 ~ 26886030 (+)
tcf3a tcf3,LOC103366684,LOC104929652 other downstream 383801 27147061 ~ 27177206 (+)

Expression


Co-expression Network