G118234 (sugp1)


Basic Information

Item Value
gene id G118234
gene name sugp1
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26883559 ~ 26886030 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU159378
acacgtgttattaacccctaggttaattttgcgccggatttctcctttaaactCAGTTCATCTGGATAAAGAAAAAACTATTCAAacataggcctttttttttccataagcTATTTTAACATGTCACAATAGGAAAATCACGTGAAAATAATAACTTTAATGAATGGTTGAATCCCATTTAcattagctgcttcagtttcagggtcctggtattgcaCATGCCAGCTTACTGTCATGGCTTACAAGGACACTTGAAGAGAATGGAGCCGTTGtaaatgttattagtaacacctgtgcttttcataCGATGATAAGTCACAATGTCTGCTGTTAAAAAGGTCTGTTCAAGTGTAAAtgccaacaaaaaaaagcacaatgATGACACACAGTTGCACAGCTAGACTTGTGAGATAGTAGACTAGAATGTTCAcgttgtgcaaaaaaaaaaaaggatttcattcgacaataaaaaaacaattagtCATATGTCAACACTCAAACAGTTTCTGTTGTGTACTCTACTTTGCACTTTGTCTTGTTGATTCTGTCATTATTtaagagaaatagaaaatgaatttTTCATGCTTTAAAATAACAGTAGTGTAGCTTCACTTAGATTTGCACATTCAAAGAATTTGATGTGGTGATGATTTGGTGCATTATTGTCCAGGGAATGTAGAAGTTCAGAGTGTAAGTAAAAGCATTGAAATAAAGATTTTAGTCATTGACAAGTGTACCCTGAATGATAAAGAAGTGCACTGAAAGGCAAATGTAATGAAGATGAATGCTCACTTGTTGACAGGAGCCTTGATGCCCTGTCCATCACTGCCCAGGCCTTCACCTTCCTTCCAGCCCATCTTCATAAGCATTCGGAAACCAAGATTTTCCACCGTCAACTTAAACTCTTTGTATTCTGAGTAGTCTGGGTCCCGGCCCTCCTGCAAGGCAAGAAGAATAAAGTTGGGAATTCATGCCATACACACTGAGATGTTGCACCATTTCACTGTCTCCAATACCATTTAGTCTCTTTCTAAAAAATAACGGAGGGTGGGAAGATTCTTGAATACTAATTTAGTGTGGGTTAGGGCAAGATCTTGTATTATTTAGTTGATTTGACTCATCTGAGGCGGTTTAGTATAGGAGGGTTGTAGTCTTTACTAAATACAACCTGTAAAAACCTGAGAACAAATGTTATTTTCCCCATTTCTGCCATTACACTCAAATGGTATGCTGTGTTTAACACTTACAGCCTTGGTCTCTAACATTCCATGACTCTGGAAGTACATTTGCATTAGATCAAAATCTCTATTGACATACTCTGctgttttttcaacttttaaaggaataaaaaaatagtttggTTTTCCCAACAGTACCAAATCGAGTTAAACAGACTTTCAAATAAACAAGTGGCAATTACAGTCTCCTCCTGGGGATCCCTCAGGAGGAGCGAGAGGAATTTGCAGGGAAAAGGGACGTCTGGGTTGCTCTGCTGGCTGTTACCACAGTGCCCCTGACCTGGATAAGCAGCTTGAAAACAGAGGCATGGATGGATGATTACAATCCTGTTTACAGACATTTCCAATTGACCCTGGCCCTACTAAATTGTGTATGGCCGCTCTGTGGAGAAGCAGACTAAAAGACGCATGAAACACGCTTTACAGTACTCTAAAGAGATCCTGCAGAGAATAGATGAAAttggttttctttctttgtaaacAAAACACTTCTTTAAATGACAAATTCAAAACTTTTAATGACCTCTTGGATGCctgaaaaataattaattacatTAGTGGGATAGTCTTCATTTACCTCTAAAACTGAAATTAATGGATTATGGGCAATCCTAGCAGTTGCACAACAGCAAAACCCTTCAATATTAGGCTAGAGAACAAGTATATTCAGAGGCAAACTAACCTTGAGTGCCTTGAAGGTTTCCATGAACTTATCCAGCTCCTCAGGGGGCAGGAAGTCACCAATAAAATGTTTCCCTTTACCCATTTCTGTCAGAGATTCTGCCCACTCACGGGTTTTCTCCATTTCCATCTGTCGGAGACGATGCTCCCAGGTTCCTGCCTGCTGGTCGACTTCTTCATCACTGTCGTATTCATGTTGGTGGTCTCTAATGGCCTTCTCCCACATCACCTGCATCTCTGCCATCGCACGCTTGTGCTTCATGATCATTTCATACATCTCTTGCATCTGCAGAGTGTgagatatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

symbol description
sugp1 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Orthologous to human SUGP1 (SURP and G-patch domain containing 1).

NR:

description
PREDICTED: SURP and G-patch domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159378 True 2327 TUCP 0.40 2 26883559 26886030

Neighbor

gene id symbol gene type direction distance location
ndufa13 ndufa13,LOC102786334 coding upstream 64542 26815684 ~ 26819017 (+)
LOC120569005 LOC106935698,LOC103153539 coding upstream 70134 26792202 ~ 26813425 (+)
zgc:85843 tm6sf2,LOC104924838,LOC102294137,LOC102201647 coding upstream 211301 26666504 ~ 26672258 (+)
LOC120568699 slc25a24,LOC104964315,LOC103357622 coding upstream 294988 26580603 ~ 26588571 (+)
LOC120568740 NA coding upstream 317914 26559608 ~ 26565645 (+)
LOC120567603 LOC103357602,LOC108239446,LOC104948981,LOC105934574 coding downstream 4905 26890935 ~ 26899765 (+)
LOC120568413 LOC107384102,LOC105934594,LOC104929657,LOC103366675,LOC108239475,LOC103395958,LOC102222760 coding downstream 72636 26958666 ~ 26963795 (+)
sf3a2 sf3a2 coding downstream 107173 26993203 ~ 26997296 (+)
LOC120568316 LOC103366679,LOC104964519,LOC102791861,LOC100706611 coding downstream 152305 27038335 ~ 27090300 (+)
LOC120567789 NA coding downstream 245123 27131153 ~ 27134151 (+)
G118164 NA non-coding upstream 59481 26821243 ~ 26824078 (+)
LOC120569008 NA non-coding upstream 98700 26781367 ~ 26784859 (+)
LOC120569009 NA non-coding upstream 120299 26743741 ~ 26763260 (+)
G118115 NA non-coding upstream 209108 26602656 ~ 26674451 (+)
G118263 NA non-coding downstream 82474 26968504 ~ 26968990 (+)
G118265 NA non-coding downstream 90268 26976298 ~ 27055691 (+)
LOC120568996 NA non-coding downstream 133816 27019846 ~ 27021109 (+)
G118283 NA non-coding downstream 312153 27198183 ~ 27198459 (+)
G118303 NA non-coding downstream 358719 27244749 ~ 27244955 (+)
LOC120567599 LOC101062208 other upstream 26165 26839178 ~ 26857394 (+)
G118149 NA other upstream 113648 26765492 ~ 26769911 (+)
prkab2 prkab2,LOC101470867,LOC107384083,LOC102226598 other upstream 283487 26590782 ~ 26600072 (+)
wdr47a wdr47,LOC102290984 other upstream 386750 26421454 ~ 26496809 (+)
ccl20a.3 NA other upstream 465551 26416508 ~ 26418008 (+)
tcf3a tcf3,LOC103366684,LOC104929652 other downstream 261031 27147061 ~ 27177206 (+)
LOC120569025 NA other downstream 293067 27179097 ~ 27182720 (+)
gpr35b NA other downstream 508493 27394523 ~ 27399396 (+)
LOC120568838 LOC103364371,LOC102207447,LOC101475014 other downstream 715970 27602000 ~ 27609718 (+)
LOC120568664 NA other downstream 817971 27704001 ~ 27705211 (+)

Expression


Co-expression Network