G118409 (LOC103364379,LOC104929640,LOC100699176)


Basic Information

Item Value
gene id G118409
gene name LOC103364379,LOC104929640,LOC100699176
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27363578 ~ 27366561 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU159593
TTACATTCTTAAAACCACATATAATGTATCCCATTGGACAACAATATATATCGAGCTGTGTAACTCAGTTACTTTTGGACTATTAATATACCTCTTGTACATTTTGTCAAACAGGGAAAGAGAAGGGAGACAAActattcttttttgtttttacctaatcttttttcaataaaaaaaatagattacTGACTTTTCAACACAAAAGTGGAGACACATAAAGAAAAAGGTGGATAAAAGacaaatgaaaatcacagcaaaaAGAAACATTAAACCCTTATAACGAATTCATATTTAACTAACTGATTTAttcgttgttgttgtttgttttttttattcctatGTTTTGTAAATTTGATGTCACGATATTAGGACAAACAGGAAGGGTTTTGACACTTAGTgtaacattcacaaaaatagaACTTACGTCCACAGTGATTATGGTTAAGGGTCTCATATTAGGTGCAAAGGTGCGAGGAGCACGGGGCTAAAAGATGACACTGGTAATAAAAGGGACAAGAGACCACAGCTAGCTCCCTGAGAGGCAGGTACTCAGACTCTGCTCAAGAACTTCACAGCACCCCGAGTAAgacattatcatcatcatcatctcaatGTGATAACAACCTTCAGAGAGCGTGTGATTTACGTACATGAAAAATGTAAACAGTTATGGGTGACCTTGTGTGACAgatattgaataaaaaaacaaaaataataaagcaGATTGACTGAAAAGTCTTACTGGCATTTGAGGCCCAACTCAGGGGGGCAGCTGGTAGCTCTGTCTGGCCTTAGACTAGTGTCCAGTGAGGAAGAGGAAAGTACAAGTGCTTGGATTTGGGACTAAAGGAGATAGGAACAGCAAATGTACAAAATAATACAGTTGTTCCAACCAGCATGGAGGGATTACGATACATATTATGGATCATCGTCGTTCCGGCCTGTAACCAACTGAAACAATTATGAGTGAAAGACAATTAtactacacatactgtactgacTGCTGGTTAGAAACAGGTAGGGAAACCCTGTGTATTTTATTATACCGTTCATGAAGTCCTCTTTTGCCTCGCTTTTGACTTTTTCTTAGTGTCCTTGTTTGTCCTCTTGTCATTTTAGCCGAGGGTGTCAGCAGCAACAGCGCAGACGGAAATCTCTCGGTTTAAATGCAAGACCaaggcaatgttttttttcgtgTCGCATCTGCAACACCAACAGGTGTCCACCCCCGTCGCTTGCGTCATGACCGCGCCTATAACCCAGCTGGATTTGCCATCAGGGCAAGAGGGGGCCGTTGCCATGGAAACCTGAGAGTACTGTCAAAAGAGAGGAAGTAGTCCAGAAAACGATTTGAGTCCAAATATTAGTTTTCCTGAAATATTCATCTTTTCCTCTATCTCTTACGATGCACCttttctctccccttctctcttaACTGAACTCACACATTCTAACTCTCTCCGTATGCTCATATAGTCatctatttacatttttatttaaaatatttgtttataaaTGTGTATATAAATTAAAGATAATTTCATCTTGTCCTGTCTCTAAGTGGCATTTACAAGGAAAGGGGTGCGTGGGACTGAGGTTTTTCATTGCATTACAAGAGTTTACAAAAAGGCAGCACCGAACACCGTCTAAATGTGTGGGAAGCTGGTTCTCAGCTGATTAAGCCGTGAGTCATATCAtatctgtgtgtttctttttttatatcagagAAAATGACTCTTGGTCCCTAATTGATGGTCAGTACAAGGATATTGTCTGTATGAATACGCGTGTGTACCAAACTGAGATGTATTAGCCTAATATAGAAAGAAATATTGACTGAGAGCTGTATTAATAGTGAGACCTGTGGATTGATACAACTTCATtctaatactaatactatgtAAAACTCTGTCTCAGAGTGGCAGTGTTGTACATTCACTGTTGTTGGGTTCTGGCTTGTGCACTGGTGCTTATTGGTGAGGTACATTCATAACTGGTTGGGCGATCCTCAGTGGATCTGATGTTAAACAAGTGTTAAAGCTTGGAGCTGTCTCATGGCTAGTGGGCTGTTATTATTAGGATGCCCATCCGCTTGGTGTTAATGCTACAATATGCAGAGGACCATGACCATGTGTGGTCTGTAGTGTAAGGTGCTTTGCCTGCTGGGAAAGTGGAGGACTACTTTGGGATCATTGGAGACGGAGTATTTAAAGTTCTGGATTGTCTCGTAACTGCTGGTTGTTGAGCTTCAACATCTCtatccttctctgtctctcctttttTGCTTCCCTACTTCTTAATATACTCTgttcatctctcttttttttgtctgtcggtctgtctgtctgtctagctGTTGGTGGAGTCCGGCAGAGACATCTCGCTGCCAAACACTTCCCGGTACAGTGGTGGGAAACTGTAGGCGGTATCTGGGTGGACCAAACGGAAAAACTCGAGTTTATCAACGTGGAGGTTACAGATAGACTTCATTGTGGGCAGCTTGGACACCATCTTGTCCAGTTTCTCATCTGAAGCACCACTCTTGTGTAGACTGTGCTGCAGAGCCAGGTAGACTTTCTCCTGGAGCTTCTGAACCTTCTGGCCTTCTGTTAGCCAGGGTCGATCTACGggaaagaaaatacaaacacatgAACCTACAGTTTTGCTTCTCCTTAAGTAGCTTCAATCCACATTGTCCGACAGTATATATTCCACGTCAGCTCCTGATTGACGAGTATGACGTGTACACTGAGTGAAATATTCAAATCCAAGACTGTCTTTAATGGCTGCACCATTCAATCAAATGGAAATACATGAGAAGTCTTGCACATCGTTTTAAcacatttcccaaaattcagcctgaCATATTTGATATGTTTAGAAACTTT

Function

NR:

description
PREDICTED: nuclear receptor ROR-beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159593 True 2888 lncRNA 0.40 2 27363578 27366561

Neighbor

gene id symbol gene type direction distance location
cactin cactin coding upstream 34727 27318329 ~ 27328851 (+)
LOC120567742 LOC104929666,LOC103364388,LOC102238372,LOC107384139,LOC106526336 coding upstream 72043 27286920 ~ 27291535 (+)
LOC120567815 LOC104964637 coding upstream 82248 27261660 ~ 27281330 (+)
LOC120567763 btbd2,LOC103376164,LOC107096948 coding upstream 112307 27246293 ~ 27251271 (+)
LOC120568858 mex3d,LOC106923040,LOC106951442,LOC103151246,LOC103479451,LOC105934582,LOC107096960,LOC101078722,LOC104929649 coding upstream 167372 27191141 ~ 27196206 (+)
abhd17aa LOC104964210,LOC102219722,LOC102776363,LOC106951423,LOC103364376,LOC103151229,LOC103479270 coding downstream 67552 27434113 ~ 27442129 (+)
LOC120568637 LOC103375584,LOC102291402,LOC100711435,LOC101486656,LOC102207732 coding downstream 245514 27612075 ~ 27632981 (+)
LOC120567796 NA coding downstream 319603 27686164 ~ 27688056 (+)
epha4b LOC103372263 coding downstream 372431 27738992 ~ 27838118 (+)
dnah9l LOC103372266,LOC102781332,LOC102213424 coding downstream 594341 27960902 ~ 28025246 (+)
G118306 eef2,LOC108239462,LOC107552698,LOC107384141 non-coding upstream 102223 27258374 ~ 27261355 (+)
G118280 LOC108239462,LOC106526414,LOC106536761,LOC107384141,LOC107096963,LOC104964635,LOC106908645,LOC106951439,LOC103151243,LOC102221193,LOC103479455 non-coding upstream 108229 27252543 ~ 27255349 (+)
G118303 NA non-coding upstream 118623 27244749 ~ 27244955 (+)
G118283 NA non-coding upstream 165119 27198183 ~ 27198459 (+)
G118265 NA non-coding upstream 307887 26976298 ~ 27055691 (+)
G118420 NA non-coding downstream 20335 27386896 ~ 27387956 (+)
G118488 NA non-coding downstream 243537 27610098 ~ 27610325 (+)
G118514 NA non-coding downstream 322451 27689012 ~ 27690687 (+)
G118537 NA non-coding downstream 577690 27944251 ~ 28042190 (+)
G118549 NA non-coding downstream 669900 28036461 ~ 28037330 (+)
LOC120569025 NA other upstream 180858 27179097 ~ 27182720 (+)
tcf3a tcf3,LOC103366684,LOC104929652 other upstream 186372 27147061 ~ 27177206 (+)
LOC120568791 LOC103357601 other upstream 424696 26878555 ~ 26938882 (+)
G118234 sugp1 other upstream 477548 26883559 ~ 26886030 (+)
LOC120567599 LOC101062208 other upstream 506184 26839178 ~ 26857394 (+)
gpr35b NA other downstream 27962 27394523 ~ 27399396 (+)
LOC120568838 LOC103364371,LOC102207447,LOC101475014 other downstream 235439 27602000 ~ 27609718 (+)
LOC120568664 NA other downstream 337440 27704001 ~ 27705211 (+)
LOC120568082 LOC101159534,LOC103372818,LOC101069325 other downstream 790240 28156801 ~ 28169970 (+)
LOC120567689 NA other downstream 2596854 29963415 ~ 29969913 (+)

Expression


Co-expression Network