LOC120568838 (LOC103364371,LOC102207447,LOC101475014)


Basic Information

Item Value
gene id LOC120568838
gene name LOC103364371,LOC102207447,LOC101475014
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27602000 ~ 27609718 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU159680
AGTCATCAGTGtagcccattgacatatataaaaggcgTAGCCGCCATGCGGCTCTGGAGAGCGACAGCGTTCTTAGGTTTGTTAGGGAGCAGAGGAGTACAGAGAAGTATGTGTGCTCAGGTTGGAGACTGGCAGAGTGCCAAGTCAATCTACGAATTCTCTGCCAAGGATATTGACGGCAATGATGTGTCCCTTGAGAAATACAGAGGGTATGTGTGCATCATTGTAAATGTGGCCTCTAAATGAGGAAAGACCAAGGTAAACTACACTCAGCTAGCTGCAATGCACGCCTCCTACGCTGAGCAAGGTTTACGCATCATGGGCTTCCCATGCAACCAGTTTGGAGGACAGGAGCCAGGGACTGATGCAGAGATAAAAGAGTTTGCCAAAGGTTACAACGCAGAGTTTGACCTCTTCAGTAAGATTGATGTGAATGGAGACAACGCCCACCCTCTGTGGAAGTGGATGAAGGCCCAGCCCAAAGGCAAGGGAACCCTGGGAAATAACATCAAATGGAACTTCACAAAGTTTCTGATAAATAGAGAAGGAGCAGTGGTGAAGAGATACGGGCCAACAGATGATCCCAGCGTGGTGGAGAAGGACCTGCCTACATACCTGTAATACTACTGTCTcctatgtgtttgtttgacttCTGACCTCTCCCATGGACTTCAgggtattggtgtgtgtgtgtctggaccAGTGACGGCCTGTCTGTAAACCCAACATTGGGGAAGGCAGGCCTGATGACCCCTAGCGTGCAACTAACCCACAGAACACTCCCATGCCAGACCCATAGGAGCACATGAGAGGACATTCATTAGTTATGCAAACTAGAGACCCTTCACATCTTACTTCAAACTCAGCCATTCCTCTTTCCAATGCAAATACCATCTAGTCCTTTCTGAACGTTAAGTGACAAGTTTGTTCATTATTTGCACTTAACTTGCCGAAGGGCCCATTATTGTATCTGTAAATCGTGACTTACCATGTGATGAAATTGGAAAATGAATGCTGTCGAGGACATTAATTTGTCAATTTACGTGCacttattaaattaatttaagcTATAGTAATGATCACCTTCTGGCTTTGTGAATTATTACAt
>XM_039816560.1
GGTGTTAACTAATCATATGACAGCAGTCATCAGTGtagcccattgacatatataaaaggcgTAGCCGCCATGCGGCTCTGGAGAGCGACAGCGTTCTTAGGTTTGTTAGGGAGCAGAGGAGTACAGAGAAGTATGTGTGCTCAGGTTGGAGACTGGCAGAGTGCCAAGTCAATCTACGAATTCTCTGCCAAGGATATTGACGGCAATGATGTGTCCCTTGAGAAATACAGAGGGTATGTGTGCATCATTGTAAATGTGGCCTCTAAATGAGGAAAGACCAAGGTAAACTACACTCAGCTAGCTGCAATGCACGCCTCCTACGCTGAGCAAGGTTTACGCATCATGGGCTTCCCATGCAACCAGTTTGGAGGACAGGAGCCAGGGACTGATGCAGAGATAAAAGAGTTTGCCAAAGGTTACAACGCAGAGTTTGACCTCTTCAGTAAGATTGATGTGAATGGAGACAACGCCCACCCTCTGTGGAAGTGGATGAAGGCCCAGCCCAAAGGCAAGGGAACCCTGGGAAATAACATCAAATGGAACTTCACAAAGTTTCTGATAAATAGAGAAGGAGCAGTGGTGAAGAGATACGGGCCAACAGATGATCCCAGCGTGGTGGAGAAGGACCTGCCTACATACCTGTAATACTACTGTCTcctatgtgtttgtttgacttCTGACCTCTCCCATGGACTTCAgggtattggtgtgtgtgtgtctggaccAGTGACGGCCTGTCTGTAAACCCAACATTGGGGAAGGCAGGCCTGATGACCCCTAGCGTGCAACTAACCCACAGAACACTCCCATGCCAGACCCATAGGAGCACATGAGAGGACATTCATTAGTTATGCAAACTAGAGACCCTTCACATCTTACTTCAAACTCAGCCATTCCTCTTTCCAATGCAAATACCATCTAGTCCTTTCTGAACGTTAAGTGACAAGTTTGTTCATGTATCAATGTCTGTTTCATTTATGGACAAAGAATGCAATATATTTCAGATTTCTGACAAGCTACTGATAACTATTATTTGCACTTAACTTGCCGAAGGGCCCATTATTGTATCTGTAAATCGTGACTTACCATGTGATGAAATTGGAAAATGAATGCTGTCGAGGACATTAATTTGTCAATTTACGTGCacttattaaattaatttaagcTATAGTAATGATCA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: phospholipid hydroperoxide glutathione peroxidase, mitochondrial-like

GO: NA

KEGG:

id description
K00432 gpx, btuE, bsaA; glutathione peroxidase

RNA

RNA id representative length rna type GC content exon number start site end site
TU159680 False 1108 TUCP 0.45 8 27602024 27609718
XM_039816560.1 True 1180 mRNA 0.45 7 27602000 27609692

Neighbor

gene id symbol gene type direction distance location
abhd17aa LOC104964210,LOC102219722,LOC102776363,LOC106951423,LOC103364376,LOC103151229,LOC103479270 coding upstream 159871 27434113 ~ 27442129 (+)
cactin cactin coding upstream 273149 27318329 ~ 27328851 (+)
LOC120567742 LOC104929666,LOC103364388,LOC102238372,LOC107384139,LOC106526336 coding upstream 310465 27286920 ~ 27291535 (+)
LOC120567815 LOC104964637 coding upstream 320670 27261660 ~ 27281330 (+)
LOC120567763 btbd2,LOC103376164,LOC107096948 coding upstream 350729 27246293 ~ 27251271 (+)
LOC120568637 LOC103375584,LOC102291402,LOC100711435,LOC101486656,LOC102207732 coding downstream 2357 27612075 ~ 27632981 (+)
LOC120567796 NA coding downstream 76446 27686164 ~ 27688056 (+)
epha4b LOC103372263 coding downstream 129274 27738992 ~ 27838118 (+)
dnah9l LOC103372266,LOC102781332,LOC102213424 coding downstream 351184 27960902 ~ 28025246 (+)
LOC120567659 NA coding downstream 477099 28086817 ~ 28104458 (+)
G118420 NA non-coding upstream 214044 27386896 ~ 27387956 (+)
G118409 LOC103364379,LOC104929640,LOC100699176 non-coding upstream 235439 27363578 ~ 27366561 (+)
G118306 eef2,LOC108239462,LOC107552698,LOC107384141 non-coding upstream 340645 27258374 ~ 27261355 (+)
G118280 LOC108239462,LOC106526414,LOC106536761,LOC107384141,LOC107096963,LOC104964635,LOC106908645,LOC106951439,LOC103151243,LOC102221193,LOC103479455 non-coding upstream 346651 27252543 ~ 27255349 (+)
G118303 NA non-coding upstream 357045 27244749 ~ 27244955 (+)
G118488 NA non-coding downstream 380 27610098 ~ 27610325 (+)
G118514 NA non-coding downstream 79294 27689012 ~ 27690687 (+)
G118537 NA non-coding downstream 334533 27944251 ~ 28042190 (+)
G118549 NA non-coding downstream 426743 28036461 ~ 28037330 (+)
G118564 NA non-coding downstream 509549 28119267 ~ 28119624 (+)
gpr35b NA other upstream 202604 27394523 ~ 27399396 (+)
LOC120569025 NA other upstream 419280 27179097 ~ 27182720 (+)
tcf3a tcf3,LOC103366684,LOC104929652 other upstream 424794 27147061 ~ 27177206 (+)
LOC120568791 LOC103357601 other upstream 663118 26878555 ~ 26938882 (+)
G118234 sugp1 other upstream 715970 26883559 ~ 26886030 (+)
LOC120568664 NA other downstream 94283 27704001 ~ 27705211 (+)
LOC120568082 LOC101159534,LOC103372818,LOC101069325 other downstream 547083 28156801 ~ 28169970 (+)
LOC120567689 NA other downstream 2353697 29963415 ~ 29969913 (+)
LOC120568595 sdr16c5 other downstream 2959377 30569095 ~ 30677352 (+)
G119114 NA other downstream 3555508 31165226 ~ 31203586 (+)

Expression


Co-expression Network