LOC120568986 (epha4,LOC100711706)


Basic Information

Item Value
gene id LOC120568986
gene name epha4,LOC100711706
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27643327 ~ 27675360 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU159721
CTTGggttcattcacacacacttttcccACCGGGATGGAGCCGCTTCAGCCAGCGCGCAGAGCCAGCGGGGAACACACACGCTTTCACACGGCACACATGGCTATACACTTATGGCGAATATGTTCTACCTTCATCTGGATATTAACACTAGTTTCGAGTTCGAGGACGAGGATTTATCCACCCAACGAAGTGACCCTGCTGGATACCAGGACAGTGCCAGGAGAGCTGAAATGGGCAGCCAGCCCTTCAGAGGGAGGGtgGGAAGAAGTGAGTATAATGGATGAGAAGAACATCCCCATCAGAACATACCAGGTGTGCAACGTCTTAGAACCCAATCAAAACAACTGGTTGAGGACGGACTGGATCCCTCGGTCCGGCGCTCAGAGGGTCTACGTTGAAGTCAAGTTCACCCTGAGAGACTGTAATAGCCTGCCAGGAGTCACCGGCACCTGCAAGGAGACATTCAATCTGTACTACCACGAGTCTAACGAAGACCGAGAGAGCTACATCAAAGAGAGCAGCTTCATTAAGGTGGACACTGTGGCAGCAGACGAGAGCTTCACCCAGGT
>XM_039816765.1
ttcattcacacacacttttcccACCGGGATGGAGCCGCTTCAGCCAGCGCGCAGAGCCAGCGGGGAACACACACGCTTTCACACGGCACACATGGCTATACACTTATGGCGAATATGTTCTACCTTCATCTGGATATTAACACTAGTTTCGAGTTCGAGGACGAGGATTTATCCACCCAACGAAGTGACCCTGCTGGATACCAGGACAGTGCCAGGAGAGCTGAAATGGGCAGCCAGCCCTTCAGAGGGAGGGtgGGAAGAAGTGAGTATAATGGATGAGAAGAACATCCCCATCAGAACATACCAGGTGTGCAACGTCTTAGAACCCAATCAAAACAACTGGTTGAGGACGGACTGGATCCCTCGGTCCGGCGCTCAGAGGGTCTACGTTGAAGTCAAGTTCACCCTGAGAGACTGTAATAGCCTGCCAGGAGTCACCGGCACCTGCAAGGAGACATTCAATCTGTACTACCACGAGTCTAACGAAGACCGAGAGAGCTACATCAAAGAGAGCAGCTTCATTAAGGTGGACACTGTGGCAGCAGACGAGAGCTTCACCCAGGTAACACttggggggggttgtTGGGGTGTAAACCAACAACCAGAGTGCGAGAATGTAAAGGTCACGACCCGGAAGGGTTTCTACCTGGCCTTTCAGGATGTCGGCGCCTGCATCGCTCTGGTTTCCGTCAGAGTTTTCTTCAAAACCTGCCCGCTCACCATCCGTAACCTGGCAACGTTTCCAGACACTGTTACCGGGGCCGATACGTCTTCGTTAGTGGAGGTCAGGGGGTCTTGTGTCAACCAAtcagaagaaagagaggagccTAAAATGTACTGTGGTGCTGATGGAGAGTGGTTAGTTCCTATTGGTGGATGTCTCTGCAACCCAGGATATCAAGAGAAGGGTGGCACATGTAAAGCCTGTTCTGTTGGTTTTTACAAGACCAAGTCTTCAGATGCAGGATGTTCCAAGTGTCCTCCACATAGCCACTCGCTCAGAGACGGGGCGACTGTCTGTGACTGCCACTCTGGATTCTTCCGCGCTGACAGTGACCCTCCCTCTATGGCCTGCACCCAGCCACCGTCGGGCCCACAGCAGCTCATCTCTGTGGTAAATGAGACCTCGGTGGTCTTGGAGTGGGCCCCCCCTCGCCGGCTGGGAGGACGAAGTGACACCAGCTACAGTCTCGAGTGTCTCATCTGTCAAACAGGGAGCCACAGCCAGACTGGCAGTAAAGCCCTCGCCAGGAATCGCAGCAGCTCCCAGCCTGAGGCTCAGCACAGTGGCCTGGGAATGCAGTCAGACCAGGGTATTGTGGGATCTGAAGTCCAGTCAGAGAGAGGTGTCTACCAGAGCAGACCAGTACCCGGGGATTACCTGAGACTTGGCTCAGGCTCCGTCTCCAGCTCTCAGCTCTGCCTGCCCTGTGGCTCCGATGTGCTCTTCTCTCCTGACCAGACGGGCCTGAAGAGCACCAGGGTGGTGGTGAGCGAGCTCCGGGCCCACACGCACTACACCTTCATCGTGCACGCACGCAACGGGGTCTCCCAGGCCAGCGGTGCAGGGGCAGCCCAGAGTGTATCTGTCACCGTCACCACCAACCAAGCTGCTCCCTCTCCGGTGTCGTCCATCTTAGTAACCGACGTCACCAGGCACAGTTTGTCATTGTCGTGGCAACAGCCGGATCGACCCAACGGGGTCATCCTAGAGTACGAGGTCAAGTTCTACGAAAAGGATCAGAAAGAGAGGTCCTACCGCATAATGAGGACCTTCTCTAGGAGCGTGGATGTCACGGCTCTCAACCCCCTCACCGTGTACGTGTTTCACGTGCGTGCTCGCACGGCGGCTGGATACGGCGAGTTCAGCAGCCCGTTTGAGTTCGCCACCAATTCAGATCCCTTCCCTCTGATTGGAGAAGGAGTTAACTCAGCCTTCCTGCTGCTGTCTGTCAGCGGGGTCGGGATTTTACTGCTGATATCTGCAGCTGTCTTCATCATTAGccgcagGAGGAGCAAGTACAGTAAAACAAAGCAGGACTCAGAGGAGGAAAAACATCTGAacccagGAGTTAAAATCTACGTGGACCCGTTCACCTATGAAGACCCCGATCAGGCCATCCACGAGTTTGCCAAGGAGATTGATGTTAGCAGTATTCACATTGAGAGGGTTATTGGCATGGGAGAGTTTGGGGATGTGTGCAGTGGCCGGCTGCGTGTTCAGGGAAAGAGGGAGATCTACGTGGCCATCAAGAGTCTGAAGGCGGGATACTCTGACAAACAGAGGCGGGACTTCCTGTCTGAGGCGTCGATCATGGGACAGTTTGACCACCCGAACATCATCAGGCTGGAGGGGGTCGTCACAAGATGTAAGCCATTGATGATCATCACAGAATACATGGAAAATGGATCCATGGATGCTTTTCTTCGGAAACATGACGGCCAGTTCACGGTGATCCAGCTGGTCGGCATGCTGCGCGGCATCGCCTCAGGTATGAAGTACCTGTCGGACATGAGCTACGTCCACCGAGACCTGGCGGCTCGAAACATCCTGGTCAACAGCAACCTGGTGTGTAAGGTGTCTGACTTTGGCCTGAGCCGAGTTCTGGAGGACGACCCAGAGGCGGCCTACACCACGAGGGAGGCCACTGGGACTTATCTTTCGCCTGGAGGAAAGATCCCCATCAGATGGACGGCTCCAGAGGCCATAGCTTACAGGAAGTTCACCTCAGCCAGCGATGTGTGGAGTTACGGCATCGTCATGTGGGAGGTGGTTTCATACGGAGAGAGGCCCTACTGGGACATGAACAACCAGGATGTGATTAAAGCGATAGAAGAGGGCTACCGTCTGCCTGCTCCCATGGACTGTCCAGTGGTGCTGCACCAGCTCATGTTGGACTGCTGGGAGAGAGACCGCGCAGAGAGACCCACCTTCAGCCAGATACTCAACATGCTGGATAAACTCATCCGTAACCCTGGGACTCTGCGCCGGACGGGAGGGGAcagACCCACAGCCACCTTGTTGGAGTCAGAGCTGGGTTCAGAGGTGTGCGTGTCGGTCCTACCAGAGGGGTGTGTGCCGGTGTCGTCGGTGTGCGAGTGGCTGCGGTCCATTGGGTTGGAGAGGTACGGAGACACTCTGGCAGCAGCAGGATACACCAGCCTGGACAGCCTCCTGGCTCTCACACACCAGGAGATGGACAGACTTGGAATAATCACTTCGTCACACCAGGACATACTAATTGCTAGTGTGCAGCAAGAAATGTTGTCTCAAATGCAGCACATGCAACACACAATGGTTCCAGTCTGAGCCGGAGAACGGATACAAACCAGTTTTGAGAAGAATTTTATTTACCTCATCCATGCACTTTAGAGGGACTTTTCACCAGTGGGAATACAAGGAGTGGAgtgaaggagaagagagagcgAGAAGAGCAGCACTTTTTGTGATCGTCTAACCCTATCCTGTGGAGTtttctgaaaataaaacatgatcTGGACGCGGCCACAGATAGCATTAAGCTACTGAGAGCTCAGACTGAAGCCTCATCCTCTTATCCAGTTCTATTTTtcactatttcattatttgtttttgtaaaggCTGTGCATAAGCAGAATGGCTTCCAACTTTTCTTTCGCTGCTTTGGGCTTGActtgaataaaaatgtgttctgtgtTTGCTCGTacgtctgtgcgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgtgggtgtgtggtgtgCATAGCGTGAATGCACACAACATGGATCTCCCTTGTCAAGACATCACCTATCTTTGAAtatgcaaagagagagagagagagagagagagagagagagagagagagagagagagagcacgcACGAGGAGCCGGAGAGAATGTATAATTACGAGCTCTTACTAGTTTCATACTGGAAGATCGTACTAACAAACTGTATGATTTGCTTGGGTTTTTAATTGTTcgttcattttttgtatttttttgtatgtattagACATTTAGAGTAGAGTGTCATCCATCTGTGTCAATTGTACATGTCTATTGTTTGATGCTAAGAATTAGCACCATTaagcattttgtttatttatggcatttattttttcttttttagtttgAACATTGTAAAATAGAAACACTGAGGAAATATTGTAACGATTGCCATATTGCACTGCAATAAATCCCAAAACCCA

Function

symbol description
epha4 Enables protein domain specific binding activity; protein kinase activity; and protein tyrosine kinase binding activity. Involved in several processes, including ephrin receptor signaling pathway; positive regulation of amyloid precursor protein catabolic process; and protein phosphorylation. Predicted to be located in several cellular components, including dendritic shaft; early endosome membrane; and postsynaptic density. Predicted to be part of receptor complex. Predicted to be active in Schaffer collateral - CA1 synapse; dendritic spine; and glutamatergic synapse. Predicted to be integral component of postsynaptic membrane and integral component of presynaptic membrane. Biomarker of Alzheimer's disease.

NR:

description
PREDICTED: ephrin type-A receptor 4 isoform X2

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159721 False 570 TUCP 0.52 4 27670976 27675360
XM_039816765.1 True 4190 mRNA 0.52 19 27643327 27675354

Neighbor

gene id symbol gene type direction distance location
LOC120567816 LOC107100918,LOC104958144,LOC103364372 coding downstream 87318 27552960 ~ 27556009 (-)
fem1a LOC103364373,LOC104929636,LOC107384124,LOC104958134,LOC100699443 coding downstream 94707 27546546 ~ 27548620 (-)
LOC120568140 LOC103364374 coding downstream 101360 27455416 ~ 27541967 (-)
LOC120568101 NA coding downstream 188874 27442146 ~ 27454453 (-)
LOC120568100 LOC103364377,LOC100710107,LOC102776083,LOC107384130,LOC103151230 coding downstream 210397 27399446 ~ 27432930 (-)
LOC120568372 NA coding upstream 37978 27713338 ~ 27714419 (-)
LOC120568371 NA coding upstream 42038 27717398 ~ 27720152 (-)
LOC120567657 LOC103372265,LOC100712512,LOC102781040,LOC102296248,LOC101472093,LOC102204333 coding upstream 352659 28028019 ~ 28041959 (-)
LOC120567656 LOC103372825,LOC100689894,LOC106526166,LOC108239540 coding upstream 366757 28042117 ~ 28077515 (-)
LOC120567660 NA coding upstream 429095 28104455 ~ 28134204 (-)
G118482 NA non-coding downstream 33633 27578968 ~ 27609694 (-)
G118483 LOC103364371,LOC101475014,LOC102207447,LOC108239424 non-coding downstream 38086 27602401 ~ 27605241 (-)
G118401 NA non-coding downstream 348027 27294283 ~ 27295300 (-)
G118339 NA non-coding downstream 443638 27198582 ~ 27199689 (-)
G118337 NA non-coding downstream 445679 27174552 ~ 27197648 (-)
G118608 LOC103372824 non-coding upstream 419663 28095023 ~ 28099810 (-)
G118613 NA non-coding upstream 469068 28144428 ~ 28145034 (-)
G118632 pcyt1a,LOC104957745,LOC107091881,LOC103040438 non-coding upstream 524777 28200137 ~ 28200551 (-)
G118636 NA non-coding upstream 530351 28205711 ~ 28206241 (-)
G118668 NA non-coding upstream 795607 28470967 ~ 28473620 (-)
cirbpa cirbp other downstream 818757 26819838 ~ 26824570 (-)
G118175 NA other downstream 977375 26661621 ~ 26665952 (-)
camk2n1a camk2n2 other downstream 1323732 26315770 ~ 26319595 (-)
G117732 NA other downstream 2720009 24922203 ~ 24923318 (-)
G117560 NA other downstream 3106831 24499380 ~ 24536496 (-)
G118524 NA other upstream 38107 27713467 ~ 27718759 (-)
metap1d metap1d,LOC102783095 other upstream 470911 28146271 ~ 28152770 (-)
G118764 NA other upstream 1310731 28986091 ~ 28986319 (-)
G118856 NA other upstream 1745019 29420379 ~ 29420652 (-)
LOC120567741 NA other upstream 1960743 29636103 ~ 29649792 (-)

Expression


Co-expression Network