LOC120568664


Basic Information

Item Value
gene id LOC120568664
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27704001 ~ 27705211 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU159731
TGTCTCAGCCAGACACACGCAATGACAAGTCTCGCCTTTGTCTCGCTTCTCCTTGTTACTATGATGGCGTCCACAGCCTCAGCTCGAGGTGGGATAGGCAGTTGTTGTCGACAACATTCACAAACTCAAATCCACCGAGACCACCTGAGGAGTTATTACAAACAATCCAAATCGTCATGCCCTATAAACGCAGTGGTATTTACCACGCTGAAAAACATTAGGATCTGCTCTAACCCAGAGAAAATGTGGACACAGACCAGCATGGCCTACCTGGACGGAAAAAACTGGCAAATCCAGCATTCCACCTTACACAAACACCATCGCTGACACAATAAGACAGCAGTATTGAAACTAATACTAAAAAAGCCATAATTCCCAATTCCCCTCGTTTTTTGTTTGAGTTCAACAGACTTTTGaatgttttcatattttctgCAAAGTCTTAATCTCATTTTAGTTAAGTGAAAT
>XM_039816318.1
GCGAGGGCCACAACGATGAGCTGCTGTGGGAGGAAATATGTACTCTACTTTCCAGCCGTGTGCGTATCTGTGGGTGCAGCGTGCTCAAATTGCAAGTGGCGTGAATGAATGTGTCGACTGTGTTGGTGTGCTTAAAAAGGGCTCgcagcacagacacatgcaTCACATCTGTCTCAGCCAGACACACGCAATGACAAGTCTCGCCTTTGTCTCGCTTCTCCTTGTTACTATGATGGCGTCCACAGCCTCAGCTCGAGGTGGGATAGGCAGTTGTTGTCGACAACATTCACAAACTCAAATCCACCGAGACCACCTGAGGAGTTATTACAAACAATCCAAATCGTCATGCCCTATAAACGCAGTGGTATTTACCACGCTGAAAAACATTAGGATCTGCTCTAACCCAGAGAAAATGTGGACACAGACCAGCATGGCCTACCTGGACGGAAAAAACTGGCAAATCCAGCATTCCACCTTACACAAACACCATCGCTGACACAATAAGACAGCAGTATTGAAACTAATACTAAAAAAGCCATAATTCCCAATTCCCCTCGTTTTTTGTTTGAGTTCAACAGACTTTTGaatgttttcatattttctgCAAAGTCTTAATCTCATTTTAGTTAAGTGAAATGATATCTATTATATTTGCCtttttatgtatggttttcaatgATATGGTGTTTGTTTGATGactgtaaatatgtaaataacgTGTTACTTTCATTGTACAATGATTCTGAGTGACATaagataataaaaacattcacaatG

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU159731 False 468 lncRNA 0.42 3 27704170 27705071
XM_039816318.1 True 777 mRNA 0.42 3 27704001 27705211

Neighbor

gene id symbol gene type direction distance location
LOC120567796 NA coding upstream 15945 27686164 ~ 27688056 (+)
LOC120568637 LOC103375584,LOC102291402,LOC100711435,LOC101486656,LOC102207732 coding upstream 71020 27612075 ~ 27632981 (+)
abhd17aa LOC104964210,LOC102219722,LOC102776363,LOC106951423,LOC103364376,LOC103151229,LOC103479270 coding upstream 261872 27434113 ~ 27442129 (+)
cactin cactin coding upstream 375150 27318329 ~ 27328851 (+)
LOC120567742 LOC104929666,LOC103364388,LOC102238372,LOC107384139,LOC106526336 coding upstream 412466 27286920 ~ 27291535 (+)
epha4b LOC103372263 coding downstream 33781 27738992 ~ 27838118 (+)
dnah9l LOC103372266,LOC102781332,LOC102213424 coding downstream 255691 27960902 ~ 28025246 (+)
LOC120567659 NA coding downstream 381606 28086817 ~ 28104458 (+)
pcyt1aa pcyt1a coding downstream 487704 28192915 ~ 28203729 (+)
clstn2a LOC102305044,LOC102198559,LOC100692037,LOC101467236,LOC102787137 coding downstream 568456 28273667 ~ 28473545 (+)
G118514 NA non-coding upstream 13314 27689012 ~ 27690687 (+)
G118488 NA non-coding upstream 93676 27610098 ~ 27610325 (+)
G118420 NA non-coding upstream 316045 27386896 ~ 27387956 (+)
G118409 LOC103364379,LOC104929640,LOC100699176 non-coding upstream 337440 27363578 ~ 27366561 (+)
G118306 eef2,LOC108239462,LOC107552698,LOC107384141 non-coding upstream 442646 27258374 ~ 27261355 (+)
G118537 NA non-coding downstream 239040 27944251 ~ 28042190 (+)
G118549 NA non-coding downstream 331250 28036461 ~ 28037330 (+)
G118564 NA non-coding downstream 414056 28119267 ~ 28119624 (+)
G118575 LOC103372819,LOC108239494 non-coding downstream 471276 28176487 ~ 28178341 (+)
G118554 ap2m1,LOC105021137,LOC105899178,LOC107727484,LOC108267679,LOC107559346 non-coding downstream 504504 28209715 ~ 28214108 (+)
LOC120568838 LOC103364371,LOC102207447,LOC101475014 other upstream 94283 27602000 ~ 27609718 (+)
gpr35b NA other upstream 304605 27394523 ~ 27399396 (+)
LOC120569025 NA other upstream 521281 27179097 ~ 27182720 (+)
tcf3a tcf3,LOC103366684,LOC104929652 other upstream 526795 27147061 ~ 27177206 (+)
LOC120568791 LOC103357601 other upstream 765119 26878555 ~ 26938882 (+)
LOC120568082 LOC101159534,LOC103372818,LOC101069325 other downstream 451590 28156801 ~ 28169970 (+)
LOC120567689 NA other downstream 2258204 29963415 ~ 29969913 (+)
LOC120568595 sdr16c5 other downstream 2863884 30569095 ~ 30677352 (+)
G119114 NA other downstream 3460015 31165226 ~ 31203586 (+)
G119123 NA other downstream 3493749 31198960 ~ 31235565 (+)

Expression


Co-expression Network