LOC120568082 (LOC101159534,LOC103372818,LOC101069325)


Basic Information

Item Value
gene id LOC120568082
gene name LOC101159534,LOC103372818,LOC101069325
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28156801 ~ 28169970 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU159791
AGCCGAGCCGAGGGCGTACTAGCTACGCTCTTTCTCGCTGCTCGCTCACTGTACGTGACGTCAAACCAGCATGGCGGCCAAGGTGCAATCTACCAAACGCGGGGACCCGAGTGAGCTGAAATCAATCTTCCAAAAGTACGCCAGTGTAGCGGACAAGGATGGAGAGAAGTTCATGACCCCGGGAGACTTTGTCCAGAGGTATCTAGGACTACACACGCAGATCCACCACAACCCCAAAACGGTACAGCTCATCGCTGCTGTGGCCGACACCACCAAGGACGGGTACGTACTGATCGGAAACGGCGTGCaagaacacatgaacacacagctTATCGTTACTAATTGACAGTTTATTGAGCCATGTCTGATCAGTAGTTGCCACTATCAGCCACTTGCAGATAAGATAGTCCCAATGACTCCCGTTTCCCAGACTGTTTGCGCATGAAAGTTGATCAAGTGACTTAGTGTTTGGATCTGTTTGGAAAATCTTAGTAATAtttctgatttgttttttaCTCAGACTGTTTATCTGTCAGCCCTAGGGTCATTTGCTGTCTAG
>TU159792
AGCCGAGCCGAGGGCGTACTAGCTACGCTCTTTCTCGCTGCTCGCTCACTGTACGTGACGTCAAACCAGCATGGCGGCCAAGGTGACTTCGGCATCGCTCTCGTAGCGATTTTCAAACCTCTACTTTAACATGTCTGCATGCCTTCTGTTCGTTTTCTTGTGTAGAAATGATCAAAGACAGACTTCTAGCTCCTGCCCGGGTAGGGTGTCTCTGATGCGGTGTACTCTGAGGCGGTAGCATCACCGGGCTAGCGGCTGCCCAGTGTTCTGGCCTTGATGAGACATCCACAACCTCGAAGTTAGCGAGATAATGCTAAACATAATGCCGTAATAAGACCAACAAATGCCAGCTTGCGTCGCATCTTTTCGCAGCAGTCGACGTTTTGTCACTTTGCCGATTTAAAGCTTAAAATGTCATTGCAACTCAAACGGTTTGTGTCCTCTTCAAACGAATAGTTTGTGCTTGCTAGCCGCCTACCCAGTGGTAACGGTAGTTTTTGAGCTTGTGTTTAGATTGTTTGCCTGGTCGATTGTTTAGCTAGCTGCCTAACTTCTTCAACTTGAGAGCATACCAAGGGTGTAAGCTAGTCGTGAGCTTTGACTGTGTGCCGTGTCTGTCGCAGTAGGTTGGGTTTCTCCTTCACAACAACAGTGGACGTTTCAAGGAGACAACTCAAAGGCTTGTTTTGCTTCATCTTCTATCCAGTGCACCGCCTGCAAAACCTGTTGTAAACAGCATCTTATTTGGCAATGTGAACACGCACACTCGCATGGTCGAATAATGTTATTTTAATGTGTATTGTTTTAGGTGCAATCTACCAAACGCGGGGACCCGAGTGAGCTGAAATCAATCTTCCAAAAGTACGCCAGTGTAGCGGACAAGGATGGAGAGAAGTTCATGACCCCGGGAGACTTTGTCCAGAGGTATCTAGGACTACACACGCAGATCCACCACAACCCCAAAACGGTACAGCTCATCGCTGCTGTGGCCGACACCACCAAGGACGGGTACGTACTGATCGGAAACGGCGTGCaagaacacatgaacacacagctTATCGTTACTAATTGACAGTTTATTGAGCCATGTCTGATCAGTAGTTGCCACTATCAGCCACTTGCAGATAAGATAGTCCCAATGACTCCCGTTTCCCAGACTGTTTGCGCATGAAAGTTGATCAAGTGACTTAGTGTTTGGATCTGTTTGGAAAATCTTAGTAATAtttctgatttgttttttaCTCAGACTGTTTATCTGTCAGCCCTAGGGTCATTTGCTGTCTAG
>XM_039815281.1
GGATACAGTTCTCTCATCACAGTAAAATCGTTCATATAGTTACTCTCAAGTAATTTGGTGAGAGTGAGTGAATAGTTGACTATTAGTTATTAGTTGAGTGATTTATCGGTTCATATTTCTGAAAGGCTGCGCTGTTCGCTTTTCACGTTCGGACTACAACGTTACGAGTCCGAGCCGAGCCGAGGGCGTACTAGCTACGCTCTTTCTCGCTGCTCGCTCACTGTACGTGACGTCAAACCAGCATGGCGGCCAAGGTGCAATCTACCAAACGCGGGGACCCGAGTGAGCTGAAATCAATCTTCCAAAAGTACGCCAGTGTAGCGGACAAGGATGGAGAGAAGTTCATGACCCCGGGAGACTTTGTCCAGAGGTATCTAGGACTACACACGCAGATCCACCACAACCCCAAAACGGTACAGCTCATCGCTGCTGTGGCCGACACCACCAAGGACGGGTACGTACTGATCGGAAACGGCGTGCaagaacacatgaacacacagctTATCCTTTTTTTGTCCCCCCCCTCTTTTCAGCTGTTTGACAAGAATGGAACTGGAAACATTTCCTTTGACAATGTGCGGGACATCTTCAGCCAGACCACAGTGCACCACCACATTCCCTTCAACTGGGACTGTGAGTTCATCCGTCTGCACTTTGGGCACGACCGCAAGAAACGCATCAGCTACCTCGAGTTCACCCAGTTCCTGCAGGAGCTGCAGTTGGAGCATGCACGCCAGGCGTTCGCCCAGAAGGACAATGGGAAGAATGGCGTCATCTCCGCCATGGACTTCAGTGACATTATGGCCACCATCAGACACCACATGCTCACACCCTTTGTGGAGGAGAACCTTGTCTccGCTGCAGGTGGCAGCACCTCTCACTTGGTCAGCTTCTCTTACTTCAATGCCTTCAACTCCCTCCTGAACAACATGGAGCTGATTCGCAAGATCTACAGCACACTGGCTGGCACGCGGAAGGACACACTCGTGACCAAAGaggaGTTTGTTCATGCTGCCAACAAGTTTGGGCAGATCACTCCCATGGAAATTGACATCCTGTACCAATTGTCAGGCCTGTTCTCCCCCTCTGGGCGCCTGAATCTTTCTGACATTGAGAGGATAGCTCCATTAGAGGAAGGATGCCTGCCCCATCACCTGGCTGAAACCCAAAAGCAGGCCCATGGGGATGGTTCCAGGTCTGTGTTGCTCCAGGTTGCGGAGTCCTCCTACAGGTTCAGCCTGGGCTCCATCGCTGGAGCTACGGGAGCGACGGCTGTGTACCCCATCGACTTGGTGAAGACTCGTATGCAGAACCAGAGGTCCACGGGCTCCTTTGTCGGAGAGCTGATGTACAAGAACAGCTTTGACTGCGCTAAGAAGGTGCTTCGCTACGAGGGCTTCTTTGGCTTCTATAGAGGCCTGGTACCCCAGCTTATAGGTGTAGCACCTGAGAAGGCTATCAAACTCACAGTGAATGACTTTGTAAGAGACAAGTTCACCGGCAAGGGCGACGAGATTCCTTTTTGGGCTGAGGTTATGGCTGGCGGCTGTGCTGGAGGCTCCCAGGTGATCTTTACCAACCCTCTGGAGATTGTGAAGATTCGCCTGCAGGTGGCAGGCGAGATCACCACCGGGCCTCGAGTCAGCGCGCTCAGCGTGGTTCGTGACCTGGGCTTCTTCGGCCTGTACAAGGGTGCTAAAGCATGTTTCCTGAGAGACATCCCCTTCTCTGCCATCTACTTCCCCGCGTATGCCCACCTCAAGACCCAGTTTGCCGACGATCAAGGCAGGCTGGGAGCTCTGCAGCTTCTCACTGCCGGAGCGATCGCAGGTATCCCTGCGGCCTCCCTCGTGACGCCTGCCGATGTCATCAAGACGCGTCTGCAAGTCGCAGCGAGGGCAGGACAGACCACTTACAGCGGCGTCATCGACTGCTTCAGGAAGATTATGAGAGAGGAGGGGTTCAGAGCTTTGTGGAAGGGagctggagCTCGTATGTGCCGGTCTTCTCCTCAGTTTGGTGTGACTCTGGTGACTTATGAGCTCTTACAGCGGTGGTTCTACATTGACTTTGGAGGACAtCGTCCGTCAGGATCCGAGCCCACACCCAAGTCTCGCATCTTGGAGCTTCCTCCCATTAACGCCGACCACGTCGGAGGCTACCGCCTGGCCGCAGCTACCTTTGCCGGGGTGGAGAACAAATTTGGCCTCCACCTTCCCAAATTCAAGTCCTCCGGCGTGGTCTCCATACATCACCCAGAGCCAGTCGCTTCCACGCCTGCTCAGGCCCCGTAGAGGCCTGAATCTCCATTTCACTTTGccatccctctcctcctcctcctcctaccaGGAGCCAGACACTTAGATagatacacaaacaaaacacacacatattttaaaaCACACTCCACACATAGGGGCCATTCATTTAGGAACAAACTACACCAGAGTAACGGTGTGGCTCCACTGGTCCCCAGccggaggtggaggtggagggcaGGCAGGCTGCAGCTGTGGATGGAAGCGAGCAGACAGCGGTGGGACCGGAGCGCTGACTGTGTTGCATCTTCAGTAGCTGAACACTCCTGGCATCTCCATCTTTTGTGTTTCACTCCAGCATTCGTATAAAACGAAGCCTCCgccactccttttttttttttttttttttttctctcatgagTAGCCGATTTGATTTTTATTGCGTTTTTCTGTCTGATACTCAGTGCGAGTAGGACTTCTCTTATTGGCCGCTGGGCGTAGGATATATTAGATTGGTCAGCATGGTGCGTGGGGCTTCACTCTCGATTGGTCCTCCCACTGGAGGCTAGATACTGTACATATTGTATAACTGTACTGAGACAGCACATTGACAGGGAAGGGAAATGTTACAAGGCCCAGCTCTGTAACGTTGAGTCTGGATCCTTAAACAGTAACTGTAATGTTATGGCAATGCAGTTCCGGTCTCTGAGAATCACTCTTACTGATGTACAGAACTTTTCAATTGTGTTTTCTCGATAAAACAAGAATCATGAGAAGAGAAATtagatattaataaattaaatgtatctcAATTCAGTCATGttattttattgaaataaatCATCCATATGGTTTTCATTTTA

Function

NR:

description
calcium-binding mitochondrial carrier protein Aralar1-like isoform X3

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159791 False 559 TUCP 0.49 3 28156973 28159589
TU159792 False 1285 lncRNA 0.47 2 28156973 28159589
XM_039815281.1 True 3121 mRNA 0.51 18 28156801 28169970

Neighbor

gene id symbol gene type direction distance location
LOC120567659 NA coding upstream 52343 28086817 ~ 28104458 (+)
dnah9l LOC103372266,LOC102781332,LOC102213424 coding upstream 131555 27960902 ~ 28025246 (+)
epha4b LOC103372263 coding upstream 318683 27738992 ~ 27838118 (+)
LOC120567796 NA coding upstream 468745 27686164 ~ 27688056 (+)
LOC120568637 LOC103375584,LOC102291402,LOC100711435,LOC101486656,LOC102207732 coding upstream 523820 27612075 ~ 27632981 (+)
pcyt1aa pcyt1a coding downstream 22945 28192915 ~ 28203729 (+)
clstn2a LOC102305044,LOC102198559,LOC100692037,LOC101467236,LOC102787137 coding downstream 103697 28273667 ~ 28473545 (+)
LOC120568119 NA coding downstream 710675 28880645 ~ 28893212 (+)
LOC120568117 LOC107731850,LOC107684960,LOC107572523 coding downstream 774576 28944546 ~ 28946983 (+)
LOC120567801 NA coding downstream 905047 29075017 ~ 29077414 (+)
G118564 NA non-coding upstream 37177 28119267 ~ 28119624 (+)
G118537 NA non-coding upstream 114611 27944251 ~ 28042190 (+)
G118549 NA non-coding upstream 119471 28036461 ~ 28037330 (+)
G118514 NA non-coding upstream 466114 27689012 ~ 27690687 (+)
G118488 NA non-coding upstream 546476 27610098 ~ 27610325 (+)
G118575 LOC103372819,LOC108239494 non-coding downstream 6517 28176487 ~ 28178341 (+)
G118554 ap2m1,LOC105021137,LOC105899178,LOC107727484,LOC108267679,LOC107559346 non-coding downstream 39745 28209715 ~ 28214108 (+)
G118641 NA non-coding downstream 90902 28260872 ~ 28261084 (+)
G118645 LOC103376870 non-coding downstream 284546 28454516 ~ 28455138 (+)
G118646 NA non-coding downstream 310059 28480029 ~ 28480339 (+)
LOC120568664 NA other upstream 451590 27704001 ~ 27705211 (+)
LOC120568838 LOC103364371,LOC102207447,LOC101475014 other upstream 547083 27602000 ~ 27609718 (+)
gpr35b NA other upstream 757405 27394523 ~ 27399396 (+)
LOC120569025 NA other upstream 974081 27179097 ~ 27182720 (+)
tcf3a tcf3,LOC103366684,LOC104929652 other upstream 979595 27147061 ~ 27177206 (+)
LOC120567689 NA other downstream 1793445 29963415 ~ 29969913 (+)
LOC120568595 sdr16c5 other downstream 2399125 30569095 ~ 30677352 (+)
G119114 NA other downstream 2995256 31165226 ~ 31203586 (+)
G119123 NA other downstream 3028990 31198960 ~ 31235565 (+)
G119257 NA other downstream 3289894 31459864 ~ 31460908 (+)

Expression


Co-expression Network