G118880


Basic Information

Item Value
gene id G118880
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 29523113 ~ 29525489 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU160208
ATTGAAACTACAGCTAAAAACTTTCATTAAATGTTTATATGCAAGTTCAGCATTATTTTCCTCATATAGATTATCCCATGAAAAGCTGGCAAGCATGTCTTTAAAtttcaaaatatttgacttACTTATAATTCttctgtgtatgtttttttaaagataatcttttgggcattttcggcctttatttttataggacagttgaagacatgaaaggggagagagagggggaatgacatgcagcaaagggccacaggtcagagttgaacctctatatatggacaCCCGCTCTATTTCCTTGGTATTTTTACCTCAATTTACTTTTATTGAAGAGTACTGAAAGATGGGGAAATGATCTGACAAGTCAGAATACAAATCCCCAGATCTCATAACTTTGCTCAAAGAGCAGAGATGTTATCAATCAAGGTTGCTGAGTTTTCTTTGACTCGTGTAGATTTGTGTATAACAGCAAAAAAGTAACTAGAATAGAGGGTATTCAGAAAATCAGTAAGGGTATCTACTTTGTTATTCAAGAGGTTAATATTAAAATCTCCTAAGATATAACAACGTTTTTTCTCATTATTTATCAGCTCAAGAGAACTAACCAGACTCTCATTAAAATGAGATTGCAGAGTCAGGTGGGCAATAAATAACACCAACAATAATATTTCTTCCACCAGAGACACCAGAGAGCGCTAAAAAAACCAGATTCTACCTCAGCTCTGTCTGAATTCAGAGAAAGATTATCCATGATTTTAAATTCATAATCAACACAAATAAACAGTGGTACTCCACCTCCTGTTCTATTCTCTCTTACATAGTGAACTGAATTGTATTTTGgtaatttaaacatttcttttgTGCTTTCTGATAAAGCAATAACAGAGAAATCATGTTTGAGTGAAGATAAGTAATGAAAAAATGTATCATAATTGCTCGAGAGGCTTCTTATATTGAGGTGAAAAGTAGAGAAAATATTAGCAGGCATAGAAACACATAAATCATTAAATTGGTTTGAGGCTTCAGATGATGAAAAGAAATTTTGGTCTGGGTCAACATCAAAATTGTAATTGTCAATTGTAGAAGGATCAAAGGCAGTGTTTCCCACAAATTAGAAGGCAATCTGCTGTGGTCACCCCGTGTCTGACCGGGGGGGGAATAATTCCTTCGTTCATAATTCGTTACACAGAACTTAATTTTCATCATCTAACATCTAACACATCTAACACCCTATACAAATTCCTCCACAGCTGTAcaaatttcacactttttttaaatttagtaTAACAGCCTACTTGCTGCAAAAAGTTTCTAATGCCCTATAATAAGGGAAGGCCTCAGGACAGGGTCCATTGATGGAGATCCTCAGGTAAGCTGCCAGGTGTTCTCCTTGAAGTTGGTTCCTGAGGTCTGTTTTCACCTGAAGATAAAGCAAAATGCTAATTGATATGAATACAAAATGCACCAATAAAAGACATTGGGAATTTCAATATATTGCTATTACCCTGTTCACTGTTGAGAAATCCCTTTAGCAGTTTACAGAGGAAACAGGGATAACCAGAGCAATGCTTGCAAGAAGGCTCAGCCCGGGGTAGAGGTTGGCCCACTCATCAAACTCACTCGCCAGTAAACTCAAGAGCTCCTCCTGGTTCTTGTTCTTGAAAGATAAGGGTTTGTCAtggcattagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcggtgtcggtgtgtgtgtgtgttatgaccAGTCAAGTCAATTCACTTCTCACGTTGAGGGCAACATTTCCTGGAAAAGTGTCTGCAGATGAGAGGTGTTCATTGTGTTGTCTGTTAGTGCAGCTGCTTGTGGCCCAAAGACATGGAAGGCTCCAAGGATGTCCAGATTATGGAATCTCTTCTCCAGATTGGTTTCCAGGCCAGTTATGTAAGGGTGAATGAACCTACAATGACCATATCAGCATCTTTTTAGGAAGAGCCTACACTCAGTTTTGATAATAGGCATTAAGTGCCAAACCAGAGAGTATGTTCAGGACTACTACTTAtctttttaaaggttttaaaaTGTACCATTGAGGCCTGCACTAATCAATTTTTAATCTTGTcacatctatgtgaagacagtGAAGTGCATGAGAAGTAGCTTCACTGTCATTTTATATGAAAGAGCTCATCGATAAACAActgaataaaatacatttaaaagtaatgattagtatactgtgtgtatatgtatacagtacaggccaaaagtttggacacaccttctcattcaatgc

Function

NR:

description
PREDICTED: uncharacterized protein LOC108279298

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU160208 True 2315 lncRNA 0.37 2 29523113 29525489

Neighbor

gene id symbol gene type direction distance location
si:ch73-257c13.2 NA coding upstream 204295 29316220 ~ 29318818 (+)
LOC120567683 NA coding upstream 268437 29253394 ~ 29254676 (+)
LOC120567682 NA coding upstream 287125 29234683 ~ 29235988 (+)
LOC120567681 LOC107104891 coding upstream 326751 29195088 ~ 29196362 (+)
LOC120567680 LOC107752212,LOC107675959,LOC107679452 coding upstream 330955 29191093 ~ 29192158 (+)
LOC120567686 NA coding downstream 165468 29690957 ~ 29692353 (+)
LOC120567688 NA coding downstream 210031 29735520 ~ 29743592 (+)
LOC120568908 NA coding downstream 506421 30031910 ~ 30033534 (+)
LOC120569089 NA coding downstream 519405 30044894 ~ 30046190 (+)
LOC120569133 NA coding downstream 530326 30055815 ~ 30057109 (+)
G118881 NA non-coding upstream 2491 29518750 ~ 29520622 (+)
G118859 NA non-coding upstream 56510 29466260 ~ 29466603 (+)
G118839 NA non-coding upstream 177410 29345502 ~ 29345703 (+)
G118802 NA non-coding upstream 302362 29220360 ~ 29220751 (+)
G118800 NA non-coding upstream 344154 29178729 ~ 29178959 (+)
G118884 NA non-coding downstream 25085 29550574 ~ 29550809 (+)
G118888 NA non-coding downstream 50026 29575515 ~ 29576313 (+)
LOC120567627 NA non-coding downstream 62156 29587645 ~ 29588546 (+)
LOC120567652 NA non-coding downstream 164971 29690460 ~ 29690894 (+)
G118943 NA non-coding downstream 382344 29907833 ~ 29908479 (+)
LOC120568082 LOC101159534,LOC103372818,LOC101069325 other upstream 1353143 28156801 ~ 28169970 (+)
LOC120568664 NA other upstream 1817902 27704001 ~ 27705211 (+)
LOC120568838 LOC103364371,LOC102207447,LOC101475014 other upstream 1913395 27602000 ~ 27609718 (+)
gpr35b NA other upstream 2123717 27394523 ~ 27399396 (+)
LOC120569025 NA other upstream 2340393 27179097 ~ 27182720 (+)
LOC120567689 NA other downstream 437926 29963415 ~ 29969913 (+)
LOC120568595 sdr16c5 other downstream 1043606 30569095 ~ 30677352 (+)
G119114 NA other downstream 1639737 31165226 ~ 31203586 (+)
G119123 NA other downstream 1673471 31198960 ~ 31235565 (+)
G119257 NA other downstream 1934375 31459864 ~ 31460908 (+)

Expression


Co-expression Network