LOC120568595 (sdr16c5)


Basic Information

Item Value
gene id LOC120568595
gene name sdr16c5
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 30569095 ~ 30677352 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU160411
TAACTTCACCCCGGTACTGGGAGCGTGCAGGGACGTACTGGAAGCGTGCAGGGATATACTAGCTGTTAAACTCACTCGCTCAGTAGGACTTCTGTCTTGATCCATCATGAATTTCTTCCTGGAAACGATCAAAGTCCTCCTGCTGTCCATCTGGTACAATGTGGAATCTTTCATCCACATCTTTGTGCCcacgaagaagaagaacatcGCTGGTGAGGTGGTGCTGATCACGGGGTCAGGTAGCGGGATCGGCCGCCTCATGGCTCAGGAGTTTGCGGCTCGTGGCACTGTGCTGGTGTTGTGGGATATTAACCAGGACGGGATGAAGGAAACTGCTAGACTGGCTAAGCAGAGCGGAGCCAGCAGAGTCCACTACTATCTGTGTGACTGCAGCGACAAGAACGAGGTTTACAGAGTGGCTGACCAGGTAA
>XM_039816206.1
GAGCAGCTGCTTTTTCTCACCCGGGGCTACATAAACAACGACCAAGGCTCGACCGGGAAAGTAGCCCGAAAGCCCGAACGCAAACTGCTAGACGCGCTGTAACCAGGCTGTAACCCCGCTAAACAGACATCACGATCCATCATGAATTTCTTCCTGGAAACGATCAAAGTCCTCCTGCTGTCCATCTGGTACAATGTGGAATCTTTCATCCACATCTTTGTGCCcacgaagaagaagaacatcGCTGGTGAGGTGGTGCTGATCACGGGGTCAGGTAGCGGGATCGGCCGCCTCATGGCTCAGGAGTTTGCGGCTCGTGGCACTGTGCTGGTGTTGTGGGATATTAACCAGGACGGGATGAAGGAAACTGCTAGACTGGCTAAGCAGAGCGGAGCCAGCAGAGTCCACTACTATCTGTGTGACTGCAGCGACAAGAACGAGGTTTACAGAGTGGCTGACCAGGTAAAGCGAGAGGTGGGTGACGTCAGCATTCTGGTCAACAATGCTGGGATCGTGACAGGAAAGAAGTTCATGGATGCCCCCGATTCCCTGATTGAGAAGACGGTGGAGGTCAACACCATGGCTCACTTCTGGACCTACAAGGCCTTCCTTCCTGCCATGATTGCCAACAATCACGGCCATCTTGTCAGCATTGCTAGTTCTGCTGGACTCATAGGAGTCAATGGATTGGCAGACTACTGTGCCAGTAAGTTTGCAGCAGTAGGTTTCGCAGAGTCTGTGGGTCTGGAGCTGCTGGCAACTGGGAAAGATGGTGTCAAGACCACCATTGTGTGCCCGTACTTCATCAACACTGGAATGTTCAATGGGTGTCAAACTAAGTGGCCAAGACTGCTGCCAATCCTGGATCCAGACTATGTAGCCAAGAAGATCATCAATGCTGTGCTCACAGACCAGGTCTTCCTGCTGATGCCCAAGAGCATGTACCTCATCACTGCTCTCAAGAATGTTGTGCAGTGGAAGCAGGCCTCCCTCCTTGGCACTTACCTGGGATCATCAGTCCAAGTAGACTGCCACACTAACACCAGTCTGCCCTACAAACTGCCCTAGCACGCATTCAACATGACATTTGTTGTCACTGTAGAACACAGTTGGGGCAAGCTTTTTCTTTGGCCTCTGGCAGTTTAGTGTGCATTCAGTCAAATCCACTCTCCCTGTTACCCAGAGGCACAACTAAACCTGTTTGTAATATCATCAAAAGACAAGACGGTGCAGAGAAACTGACTGACTGCTCAAGTTTTTGTTTCTGCAGGTTCCTGATGATGATTTGCGTTAAAGCTCGCGTATTCAAAGATACTGTCCAGTCAGCTGTGTGCTGTCTGTAGAGTAGCTCCAGGTCATATCATCAGGAATCGGCACACAGCttgtacatgtttttgatgaaatataaatgttatttttttatatccaaTATCAATTGAGTCACTTTGAGTAAATAAAGACTTCGGCACTACAA
>XM_039816207.1
GTTAAATCTGATAACGTTAAGTTAAAACCGAAGAATGTCAAACATTAAACTAACTTCACCCCGGTACTGGGAGCGTGCAGGGACGTACTGGAAGCGTGCAGGGATATACTAGCTGTTAAACTCACTCGCTCAGTAGGACTTCTGTCTTGATCCATCATGAATTTCTTCCTGGAAACGATCAAAGTCCTCCTGCTGTCCATCTGGTACAATGTGGAATCTTTCATCCACATCTTTGTGCCcacgaagaagaagaacatcGCTGGTGAGGTGGTGCTGATCACGGGGTCAGGTAGCGGGATCGGCCGCCTCATGGCTCAGGAGTTTGCGGCTCGTGGCACTGTGCTGGTGTTGTGGGATATTAACCAGGACGGGATGAAGGAAACTGCTAGACTGGCTAAGCAGAGCGGAGCCAGCAGAGTCCACTACTATCTGTGTGACTGCAGCGACAAGAACGAGGTTTACAGAGTGGCTGACCAGGTAAAGCGAGAGGTGGGTGACGTCAGCATTCTGGTCAACAATGCTGGGATCGTGACAGGAAAGAAGTTCATGGATGCCCCCGATTCCCTGATTGAGAAGACGGTGGAGGTCAACACCATGGCTCACTTCTGGACCTACAAGGCCTTCCTTCCTGCCATGATTGCCAACAATCACGGCCATCTTGTCAGCATTGCTAGTTCTGCTGGACTCATAGGAGTCAATGGATTGGCAGACTACTGTGCCAGTAAGTTTGCAGCAGTAGGTTTCGCAGAGTCTGTGGGTCTGGAGCTGCTGGCAACTGGGAAAGATGGTGTCAAGACCACCATTGTGTGCCCGTACTTCATCAACACTGGAATGTTCAATGGGTGTCAAACTAAGTGGCCAAGACTGCTGCCAATCCTGGATCCAGACTATGTAGCCAAGAAGATCATCAATGCTGTGCTCACAGACCAGGTCTTCCTGCTGATGCCCAAGAGCATGTACCTCATCACTGCTCTCAAGAATGTTGTGCAGTGGAAGCAGGCCTCCCTCCTTGGCACTTACCTGGGATCATCAGTCCAAGTAGACTGCCACACTAACACCAGTCTGCCCTACAAACTGCCCTAGCACGCATTCAACATGACATTTGTTGTCACTGTAGAACACAGTTGGGGCAAGCTTTTTCTTTGGCCTCTGGCAGTTTAGTGTGCATTCAGTCAAATCCACTCTCCCTGTTACCCAGAGGCACAACTAAACCTGTTTGTAATATCATCAAAAGACAAGACGGTGCAGAGAAACTGACTGACTGCTCAAGTTTTTGTTTCTGCAGGTTCCTGATGATGATTTGCGTTAAAGCTCGCGTATTCAAAGATACTGTCCAGTCAGCTGTGTGCTGTCTGTAGAGTAGCTCCAGGTCATATCATCAGGAATCGGCACACAGCttgtacatgtttttgatgaaatataaatgttatttttttatatccaaTATCAATTGAGTCACTTTGAGTAAATAAAGACTTCGGCACTACAA
>XM_039816208.1
GAGCAGCTGCTTTTTCTCACCCGGGGCTACATAAACAACGACCAAGGCTCGACCGGGAAAGTAGCCCGAAAGCCCGAACGCAAACTGCTAGACGCGCTGTAACCAGGCTGTAACCCCGCTAAACAGACATCACGATCCATCATGAATTTCTTCCTGGAAACGATCAAAGTCCTCCTGCTGTCCATCTGGTACAATGTGGAATCTTTCATCCACATCTTTGTGCCcacgaagaagaagaacatcGCTGGTGAGGTGGTGCTGATCACGGGGTCAGGTAGCGGGATCGGCCGCCTCATGGCTCAGGAGTTTGCGGCTCGTGGCACTGTGCTGGTGTTGTGGGATATTAACCAGGACGGGATGAAGGAAACTGCTAGACTGGCTAAGCAGAGCGGAGCCAGCAGAGTCCACTACTATCTGTGTGACTGCAGCGACAAGAACGAGGTTTACAGAGTGGCTGACCAGGTAAAGCGAGAGGTGGGTGACGTCAGCATTCTGGTCAACAATGCTGGGATCGTGACAGGAAAGAAGTTCATGGATGCCCCCGATTCCCTGATTGAGAAGACGGTGGAGGTCAACACCATGGCTCACTTCTGGACCTACAAGGCCTTCCTTCCTGCCATGATTGCCAACAATCACGGCCATCTTGTCAGCATTGCTAGTTCTGCTGGACTCATAGGAGTCAATGGATTGGCAGACTACTGTGCCAGTAAGTTTGCAGCAGTAGGTTTCGCAGAGTCTGTGGGTCTGGAGCTGCTGGCAACTGGGAAAGATGGTGTCAAGACCACCATTGTGTGCCCGTACTTCATCAACACTGGAATGTTCAATGGGTGTCAAACTAAGTGGCCAAGACTGCTGCCAATCCTGGATCCAGACTATGTAGCCAAGAAGATCATCAATGCTGTGCTCACAGACCAGGTCTTCCTGCTGATGCCCAAGAGCATGTACCTCATCACTGCTCTCAAGAATGTCCTCCCCATGAAGCAGGGCATTTTGCTGGGCCAGTACCTGGGAGCCTTCAACCTCATGGACACATTCAGGGGACGCTCCACAAAACAGGAGTAAATGAAGAAAGAGAAGTTAAGGATGAGTAATATGGAAGGAGACATGCAAATATTAAAGCTGTCTACCTATTGTGTATTACTGTAATAAGACAAAACAGTAGTCGTGAAGGTTGGACTTGATTGCTCCTCTCATTTCAATGGTTCATGTATTCAAGCATTGAATGCCCGTTAGTCTCTTTATATCTCTCTGTTTTAATCCTTAATATCCTTAACGTACCTGTTTTTAAATGGCATGATCATTAGTACAATTTTAATTGTGATGTTATTAATAACCGTTTGTAATTGAATAGAATATAATGCTCATAATGGCCTCCTAAATTCAGCCAGCTAGTGTTGTTGCCTACTACTACTTGAGGACCAATCATGATGATGTAATGATGTATCATCAGTCCACAAACAGCCAAGTCAAACATTTTCCTATAATAACAGGGCTCAAAGTCAAATGCCATGTTTGATTTGAATGTCCGTTCTGTAAATTTGTAATATTGTGGTGTGGTTGGAGCCACAACTACAATTGCTTCAACACCGATGGAAACAATACAAAGTGGAAGAAGCATAAGTGTTGTTCGTCTGCTATTAAGAGAAGGATAAGTCCCATTCTTCTCATAAGTAAACCCATCAAATCAAATAACAGTGACAGTTTACTTATGCCAACTAACTGTAGACAGAGCTCATTATCTTTAGAATATCCAAAGCTCCAGCATTAATAAAAATGACGTATCAGTAGAAGCAGGTTCTAGGCCGTCGTCACCATAACAAAACCTTGTTCACTGTAAATGATGCTCGTCCATAATACACAGATGCATCAGAGACAAATCTAACTTGTACATCTATCAATTTATACTTCTTACTAAAGCTGGATATGTTTTGATTACAGTAAAAATGCTGACACTGCTTTATTCTGATATGTTAGCACTGTTGTGAATGGAGCCATAATAATCATCTCTAAAGGGTTTTGGGCACACTTTTGTTGTTAATCTGGCTCAGGGTTTTGCAGTCTAAATCAtttcccattaaaaaaaaaaaaagcaagtgcTCATACTCAGGAACAGTGACCCCTACTATGTGATACCTCACCTTGTAAACTTTGGACCACCTGAAGCTCTTGTGTGTTCAGACTGAACAAAAAGCTATTTTCTCCTCgtgttgagtttgttttttgaagtatttttttttttttgcaaaccgCAAATGTACGGACTGTTAAGACATAGCTGTAATTAGCTAGCACTGTAGCAGCGCGTACTAGCATGCTACAGCTAGCTGGAGTGTGAGAGGAGACCTCTACTTTTCTTCTTGGTTCCATATGTTGATGAAAGCCTCGAGATGAGCACAAAAATATGAAATCTAAACATCTTTATACTTGTGTGGTCTTAAGCACAAGAAGGCACGTCATCTTCAGTGAGTAAGGTGAACGTCGGCCCTTTATCCCTCGTTTCAGCTAGTTTACTCGATGGTTTCCTAGCAATGCTCCCAGCTGTGCTTTAACGTTCCAAAATGTTGTGGATGGAGGCATCATAGGGGGCTTGTATACAGTCTGTGCATGTCTCCTGTGGAT

Function

symbol description
sdr16c5 Enables NAD-retinol dehydrogenase activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and transcription corepressor activity. Involved in several processes, including keratinocyte proliferation; regulation of histone modification; and retinoid metabolic process. Located in endoplasmic reticulum membrane and nucleus. Part of transcription repressor complex. Colocalizes with chromatin; endoplasmic reticulum; and plasma membrane.

NR:

description
PREDICTED: epidermal retinol dehydrogenase 2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K15734 SDR16C5; all-trans-retinol dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
TU160411 False 431 TUCP 0.52 2 30569395 30574881
XM_039816206.1 False 1474 mRNA 0.49 7 30569095 30643638
XM_039816207.1 False 1489 mRNA 0.48 7 30569345 30643638
XM_039816208.1 True 2619 mRNA 0.44 7 30569095 30677352

Neighbor

gene id symbol gene type direction distance location
LOC120568730 LOC101472437,LOC102310659,LOC102778004,LOC103360659,LOC106534850 coding upstream 350373 30101634 ~ 30218722 (+)
LOC120569133 NA coding upstream 511986 30055815 ~ 30057109 (+)
LOC120569089 NA coding upstream 522905 30044894 ~ 30046190 (+)
LOC120568908 NA coding upstream 535561 30031910 ~ 30033534 (+)
LOC120567688 NA coding upstream 825503 29735520 ~ 29743592 (+)
LOC120567691 LOC107740693 coding downstream 330370 31007722 ~ 31011324 (+)
LOC120568980 NA coding downstream 754454 31431806 ~ 31453460 (+)
eif3f eif3f coding downstream 1183378 31860730 ~ 31865235 (+)
LOC120568893 LOC100705068 coding downstream 1251793 31929145 ~ 31939478 (+)
lig1 lig1,LOC102777267 coding downstream 1264851 31942203 ~ 32016352 (+)
G119030 NA non-coding upstream 106199 30452127 ~ 30462896 (+)
G118994 NA non-coding upstream 305536 30263259 ~ 30263559 (+)
G118965 NA non-coding upstream 490885 30077818 ~ 30078210 (+)
G118964 NA non-coding upstream 491383 30077399 ~ 30077712 (+)
G118951 NA non-coding upstream 601478 29967378 ~ 29967617 (+)
G119064 NA non-coding downstream 4729 30682081 ~ 30682321 (+)
G119066 NA non-coding downstream 15636 30692988 ~ 30693284 (+)
G119071 NA non-coding downstream 117890 30795242 ~ 30795503 (+)
G119076 NA non-coding downstream 173612 30850964 ~ 30895939 (+)
LOC120568932 NA non-coding downstream 247414 30924766 ~ 30926283 (+)
LOC120567689 NA other upstream 599182 29963415 ~ 29969913 (+)
LOC120568082 LOC101159534,LOC103372818,LOC101069325 other upstream 2399125 28156801 ~ 28169970 (+)
LOC120568664 NA other upstream 2863884 27704001 ~ 27705211 (+)
LOC120568838 LOC103364371,LOC102207447,LOC101475014 other upstream 2959377 27602000 ~ 27609718 (+)
gpr35b NA other upstream 3169699 27394523 ~ 27399396 (+)
G119114 NA other downstream 487874 31165226 ~ 31203586 (+)
G119123 NA other downstream 521608 31198960 ~ 31235565 (+)
G119257 NA other downstream 782512 31459864 ~ 31460908 (+)
dnaaf6 pih1d3,LOC106903480,LOC103138000,LOC103138005,LOC103137996,LOC106960166 other downstream 1188403 31865755 ~ 31869495 (+)
pip4p1a tmem55b,LOC101161334 other downstream 1211556 31888908 ~ 31914704 (+)

Expression


Co-expression Network