G119368 (lig1)


Basic Information

Item Value
gene id G119368
gene name lig1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31949459 ~ 31966226 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU160823
AAACTGCTGATGGGGGCTTTCTTGGGCGGCTCCTTATCTTTCTGCTCTTTTGCTTCTTTCTGCTTTCTCGCCGTTTGACTTTTTGGGCTCCCTTCTCCCTCTTGCGTGTCCTTTTCAACCGCCTCCTTCTTCTTGGCAGTGGCAGGCCTTTTCTCATCATCTGTCTTCTCCTTTGCTTCCTCTTCATTTTCCGCCCCCtcagcttttttttccttctcatcAGAGCTCGTTTGCTTCACCCGCTCCTCCTCCTTGgccttctcttcttcctctctcttcttcttcttcacctcctcctcatctggGCTGTTAGCCACGGCCACTGCCTTTTCAActctctcttcctttgtgtCCTCGTCCATGGGTTTGTCTGTGTTCCCTGTGCCGCTGGCGCTGTTCTCCACACGGGCGCGTTTGTTTTGCTGACCCTGCTCCTCCTTGGCCTCTGCTTCGTCTTTCTGACTCTCACTGCCGCTCCTGCTCTCATCCAGCTTCCTCTTGGGGAACATCTTCCTCGCTTTTCAGTTTTACCAAGAGCTTCTT

Function

symbol description
lig1 Predicted to enable DNA ligase (ATP) activity. Predicted to be involved in DNA ligation and Okazaki fragment processing involved in mitotic DNA replication. Predicted to act upstream of or within DNA metabolic process and DNA replication. Predicted to be active in mitochondrion and nucleus. Human ortholog(s) of this gene implicated in inherited metabolic disorder and primary immunodeficiency disease. Orthologous to human LIG1 (DNA ligase 1).

NR:

description
PREDICTED: DNA ligase 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160823 True 543 lncRNA 0.52 3 31949459 31966226

Neighbor

gene id symbol gene type direction distance location
LOC120568891 NA coding downstream 82762 31865738 ~ 31866697 (-)
kcnj9 LOC101477758 coding downstream 89381 31838382 ~ 31860078 (-)
LOC120569109 LOC104940918,LOC103370533 coding downstream 128035 31802504 ~ 31821424 (-)
LOC120568044 LOC103370525 coding downstream 150121 31714287 ~ 31799338 (-)
LOC120568655 LOC107092454 coding downstream 238668 31696803 ~ 31710791 (-)
LOC120568565 NA coding upstream 522591 32488817 ~ 32513982 (-)
LOC120568566 NA coding upstream 558316 32524542 ~ 32538091 (-)
LOC120568564 kcnj10,LOC100694690,LOC101485288 coding upstream 571971 32538197 ~ 32555689 (-)
LOC120568447 NA coding upstream 628432 32594658 ~ 32600456 (-)
LOC120568440 NA coding upstream 636917 32603143 ~ 32614898 (-)
G119358 NA non-coding downstream 30332 31918039 ~ 31919127 (-)
G119357 NA non-coding downstream 31489 31916654 ~ 31917970 (-)
G119347 NA non-coding downstream 33645 31849438 ~ 31915814 (-)
LOC120567841 NA non-coding downstream 285635 31660615 ~ 31663824 (-)
G119284 NA non-coding downstream 335135 31614016 ~ 31614324 (-)
G119394 LOC104960271,LOC108428278,LOC103396779,LOC106525269,LOC103358974,LOC102300463 non-coding upstream 139118 32105344 ~ 32110517 (-)
G119455 NA non-coding upstream 157113 32123339 ~ 32124490 (-)
G119472 NA non-coding upstream 360546 32326772 ~ 32330072 (-)
LOC120568563 NA non-coding upstream 364603 32330829 ~ 32352681 (-)
G119479 NA non-coding upstream 437300 32403526 ~ 32419889 (-)
zeb1a LOC103364416,LOC100701828,LOC102292734,LOC101079552 other downstream 374266 31469595 ~ 31575193 (-)
LOC120568745 NA other downstream 492302 31455599 ~ 31457157 (-)
G119177 NA other downstream 774508 31126430 ~ 31174951 (-)
G119169 NA other downstream 777849 31169922 ~ 31171610 (-)
LOC120568929 NA other downstream 1073348 30864246 ~ 30876111 (-)
G119379 NA other upstream 81251 32047477 ~ 32051439 (-)
G119465 cadm3,LOC106600493 other upstream 250276 32216502 ~ 32226360 (-)
LOC120568568 NA other upstream 398235 32364461 ~ 32374518 (-)
fcer1gl NA other upstream 794743 32760969 ~ 32765211 (-)
LOC120567697 copa,LOC103137970 other upstream 862138 32828364 ~ 32832509 (-)

Expression


Co-expression Network