G119582 (vangl2,LOC103137974)


Basic Information

Item Value
gene id G119582
gene name vangl2,LOC103137974
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32768707 ~ 32769852 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU161081
ATCTGGGATtttaatgggatttgttgacaataaagaAAATTCTGAATAATACTCGAGGCTTATGCTTTAACATCCTTATCCAGTTAAGATAAGCAGATACAGATTGCATGATTATAACAGCTATACATGGGGCCCTTGTTTAGTCTTCTTGCTTAAACTGTAAAATGAATAGTAAAAAATGCCAGTGTAGAATAAAACAAAACCTGCATATGTAGACAATCATGAATTCTGTATTCTGGAGTAGCTTAGGAATGTACTTCCATGTTTCTTTACAGTCAAGATATAAAACGACATTTTGGCCTTTAGGCTGCTGAAAAGCCACACGTGAATTCAAAGCACATAATGCTACATtctgtaagtaaaaaaaaaaaagtcacaccctttaatataaaaacagtccttGTCATTTGACACAAAACAATCCACTGAGAGGAAACCAATGGGCAGTGGTAACCAGCGCTGCAGTCAGAGCTGAGCTCCAGGTAGTCTGTGTTTAATACacaagaaagaggaagtgacaCGTATGATGTAATCCCCCTCCTCTGGTGTTCATGTGAGTCAGCAGTCCAGTGGTTACAGCAACAGAGggagcaaaaaaaaagagaaaaagtccccccctttttttttttcaacaaagacaaagatTTTACAACACaggtaaagaaaaagacaaaaaaaaggtcAAGGCATCTGTTTAATTCCAGGTTTGAACAATCGTTGAGCTGATCACAGTTTGATATCAGAGCATCTGTGACGATCAtggaacaggaggaggaggatgattgGATGGGGGAGTGGGCCACAATGGCCTCCCGCATGTCCCGTCCACATCCAGCAGGAGCGAGTACCTAGAGAGGACAACGTGGGGGGAGTGGGGAGAAGGGCGATGCCTTCACACCGAGGTCTCCGACTGCAGCCTCATGACGAACTTGTGGCTCTTCGGATCGATGAACTCCTCCCCGAGGCGCAGGAAGGGCAGCGGCGTCACCGTGACGACCAGGGAAAAGTCCAGGCGTCGCAGGGAGAAGACCAGACCCTGGCGCAGGGCCGAGGTCACCGGCTCCTCGCTCACTAAGGTCCACTGGCGCCCCCTGCCGTTCTGCTGCTGGTACTGCATGGTGGGGCCCGGGGAGAGGTACCGCTCCA

Function

symbol description
vangl2 Involved in several processes, including chordate embryonic development; convergent extension involved in gastrulation; and regulation of Wnt signaling pathway. Acts upstream of or within several processes, including embryonic morphogenesis; generation of neurons; and sensory organ development. Located in plasma membrane. Is expressed in central nervous system; liver; pharyngeal arch; and sensory system. Used to study ciliopathy. Human ortholog(s) of this gene implicated in neural tube defect. Orthologous to human VANGL2 (VANGL planar cell polarity protein 2).

NR:

description
PREDICTED: vang-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161081 True 1146 TUCP 0.46 1 32768707 32769852

Neighbor

gene id symbol gene type direction distance location
LOC120568452 LOC103367094 coding upstream 47096 32716753 ~ 32721611 (+)
si:ch211-155e24.3 si:ch211-155e24.3,LOC108427093,LOC107549816,LOC107750208,LOC107671805 coding upstream 111850 32651304 ~ 32656857 (+)
LOC120568820 LOC101162955,LOC103374738 coding upstream 182358 32575313 ~ 32586349 (+)
LOC120568570 NA coding upstream 282299 32472620 ~ 32486408 (+)
LOC120568571 NA coding upstream 327612 32437458 ~ 32441095 (+)
myadmb LOC104961532,LOC101466547 coding downstream 73247 32843099 ~ 32852397 (+)
ltb4r2b NA coding downstream 159599 32929451 ~ 32938337 (+)
sdr39u1 sdr39u1 coding downstream 171354 32941206 ~ 32945386 (+)
parp2 parp2 coding downstream 183424 32953276 ~ 32973757 (+)
apol1 LOC106928621,LOC103148595,LOC106953189,LOC103370244 coding downstream 281153 33051005 ~ 33070053 (+)
G119579 NA non-coding upstream 11054 32757383 ~ 32757653 (+)
G119556 NA non-coding upstream 58335 32709295 ~ 32710372 (+)
G119541 NA non-coding upstream 133988 32633628 ~ 32634719 (+)
G119519 NA non-coding upstream 204221 32563841 ~ 32564486 (+)
G119453 kcnj10 non-coding upstream 212969 32549144 ~ 32555738 (+)
G119583 vangl2,LOC103367097 non-coding downstream 576 32770428 ~ 32770954 (+)
G119586 NA non-coding downstream 23165 32793017 ~ 32793495 (+)
G119622 pex19 non-coding downstream 66229 32836081 ~ 32837200 (+)
G119623 pex19 non-coding downstream 67451 32837303 ~ 32838088 (+)
G119624 NA non-coding downstream 69152 32839004 ~ 32840813 (+)
LOC120568569 NA other upstream 297137 32452705 ~ 32471570 (+)
cadm3 cadm3 other upstream 542224 32128458 ~ 32226483 (+)
LOC120567694 LOC103373937,LOC106569580,LOC100136182,LOC107383461,LOC106960171 other upstream 697395 32067563 ~ 32071312 (+)
pip4p1a tmem55b,LOC101161334 other upstream 854003 31888908 ~ 31914704 (+)
dnaaf6 pih1d3,LOC106903480,LOC103138000,LOC103138005,LOC103137996,LOC106960166 other upstream 899212 31865755 ~ 31869495 (+)
G119584 vangl2,LOC102795188 other downstream 5222 32775074 ~ 32775682 (+)
G119585 NA other downstream 11136 32780988 ~ 32781471 (+)
tep1 LOC104950563,LOC104941471 other downstream 218965 32988817 ~ 33049081 (+)
LOC120568463 NA other downstream 394064 33163916 ~ 33166100 (+)
G119769 grk7,LOC106528614,LOC104920904 other downstream 534970 33304822 ~ 33307864 (+)

Expression


Co-expression Network