G119583 (vangl2,LOC103367097)


Basic Information

Item Value
gene id G119583
gene name vangl2,LOC103367097
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32770428 ~ 32770954 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU161082
CCCTGGGCgtcatgttgtgtgtgatgcagAACTGCAGGTGTGTGAGGATGCTCTCCATGCTGTGGAAAGCCTGCTGCCGGGTGGTTCTCAGGTATTTCTGCATGGCTCGGGCCATCGGGGCGAAGATGGCCTGAGCCGCCTCCCGAGGGTCCATCACCTCCCGAGGGTGTTTGGGGGACGAGGCGACCTCGTCTTCGTGGAGACGCTTGATGTGTGTGAAGGCCTCTTCCACCGCCACGACCAACCTATGGAGGGTTGAGGAAAAAGCACCGTTAACAGACTCAGCAGCTACGCGGTTATTTCTCAGCAGAGACCTCTAGCTAGCATTTGACAGTTTCCCTTGAGAATCTGTACTTTATGTGCTGTATggctagcctggaaatccagacccaaatccaaaAGAgtaagggtctggcattgagtaatgaaaatggcccaactcgaggggcagCACCAATCATACATTTGAAAATCTCCCTGCATGCAACTGGATAAAACTACCatcaatcacaacaatacacggtgac

Function

symbol description
vangl2 Involved in several processes, including chordate embryonic development; convergent extension involved in gastrulation; and regulation of Wnt signaling pathway. Acts upstream of or within several processes, including embryonic morphogenesis; generation of neurons; and sensory organ development. Located in plasma membrane. Is expressed in central nervous system; liver; pharyngeal arch; and sensory system. Used to study ciliopathy. Human ortholog(s) of this gene implicated in neural tube defect. Orthologous to human VANGL2 (VANGL planar cell polarity protein 2).

NR:

description
PREDICTED: vang-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161082 True 527 lncRNA 0.53 1 32770428 32770954

Neighbor

gene id symbol gene type direction distance location
LOC120568452 LOC103367094 coding upstream 48817 32716753 ~ 32721611 (+)
si:ch211-155e24.3 si:ch211-155e24.3,LOC108427093,LOC107549816,LOC107750208,LOC107671805 coding upstream 113571 32651304 ~ 32656857 (+)
LOC120568820 LOC101162955,LOC103374738 coding upstream 184079 32575313 ~ 32586349 (+)
LOC120568570 NA coding upstream 284020 32472620 ~ 32486408 (+)
LOC120568571 NA coding upstream 329333 32437458 ~ 32441095 (+)
myadmb LOC104961532,LOC101466547 coding downstream 72145 32843099 ~ 32852397 (+)
ltb4r2b NA coding downstream 158497 32929451 ~ 32938337 (+)
sdr39u1 sdr39u1 coding downstream 170252 32941206 ~ 32945386 (+)
parp2 parp2 coding downstream 182322 32953276 ~ 32973757 (+)
apol1 LOC106928621,LOC103148595,LOC106953189,LOC103370244 coding downstream 280051 33051005 ~ 33070053 (+)
G119579 NA non-coding upstream 12775 32757383 ~ 32757653 (+)
G119556 NA non-coding upstream 60056 32709295 ~ 32710372 (+)
G119541 NA non-coding upstream 135709 32633628 ~ 32634719 (+)
G119519 NA non-coding upstream 205942 32563841 ~ 32564486 (+)
G119453 kcnj10 non-coding upstream 214690 32549144 ~ 32555738 (+)
G119586 NA non-coding downstream 22063 32793017 ~ 32793495 (+)
G119622 pex19 non-coding downstream 65127 32836081 ~ 32837200 (+)
G119623 pex19 non-coding downstream 66349 32837303 ~ 32838088 (+)
G119624 NA non-coding downstream 68050 32839004 ~ 32840813 (+)
G119638 NA non-coding downstream 125777 32896731 ~ 32897048 (+)
G119582 vangl2,LOC103137974 other upstream 576 32768707 ~ 32769852 (+)
LOC120568569 NA other upstream 298858 32452705 ~ 32471570 (+)
cadm3 cadm3 other upstream 543945 32128458 ~ 32226483 (+)
LOC120567694 LOC103373937,LOC106569580,LOC100136182,LOC107383461,LOC106960171 other upstream 699116 32067563 ~ 32071312 (+)
pip4p1a tmem55b,LOC101161334 other upstream 855724 31888908 ~ 31914704 (+)
G119584 vangl2,LOC102795188 other downstream 4120 32775074 ~ 32775682 (+)
G119585 NA other downstream 10034 32780988 ~ 32781471 (+)
tep1 LOC104950563,LOC104941471 other downstream 217863 32988817 ~ 33049081 (+)
LOC120568463 NA other downstream 392962 33163916 ~ 33166100 (+)
G119769 grk7,LOC106528614,LOC104920904 other downstream 533868 33304822 ~ 33307864 (+)

Expression


Co-expression Network