G119584 (vangl2,LOC102795188)


Basic Information

Item Value
gene id G119584
gene name vangl2,LOC102795188
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32775074 ~ 32775682 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU161083
CTGAGGTGGCCCACGTTGTAGAACTTGCTGGCTCCGTCCGTGCTCCGGACCACCTTGAGGCAAAAGGCGGGCTGCAGGTGTCGGACCTCCAGCAGAACCAGAGCCAGGTACTGTATGAAGAGCAGGGCGTCTACCAGCGAGGCAGCGTACTCCACGATCCCCCTGTAGTCCCGCTCCCTGGGCTCCAGCACCCGCACGCCGTAGAACAGCCAGTAGGACGCTACGAACAGGAACACCAGCACCATCAGCAGGCAGCGGAAGACAAAGAAGCGCGGCAGCGTGGCGCGCGGCGGCCGGAGAAACAGCGCCCAGGACGAGATGAGCAGGACCAGCAGCTTGAAGGCCAGGGAGACGTACAGGCCTTCGCAGGGCGTCCCGCAGGGCTCCAGGGCGTCCCGCCACAGCACCTGCGGGAGGATGAGGAAGGCTAACGGCGTGACCAGGGCGAAGAAGCTCAGGCAGCCTCCCAGAGCCGGGCCAATGAAGCGCTTGCACTCCAGCGGAGTCGACTCCTCCAACTCTTTGGTGACGCGGGTCAGGTCCTCGTTAGAGATGCTGTGTTCTGAGGTGCCGGTGACAACTGTGGTGGTCTCACCCCAGTTATCATCC

Function

symbol description
vangl2 Involved in several processes, including chordate embryonic development; convergent extension involved in gastrulation; and regulation of Wnt signaling pathway. Acts upstream of or within several processes, including embryonic morphogenesis; generation of neurons; and sensory organ development. Located in plasma membrane. Is expressed in central nervous system; liver; pharyngeal arch; and sensory system. Used to study ciliopathy. Human ortholog(s) of this gene implicated in neural tube defect. Orthologous to human VANGL2 (VANGL planar cell polarity protein 2).

NR:

description
PREDICTED: vang-like protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161083 True 609 TUCP 0.64 1 32775074 32775682

Neighbor

gene id symbol gene type direction distance location
LOC120568452 LOC103367094 coding upstream 53463 32716753 ~ 32721611 (+)
si:ch211-155e24.3 si:ch211-155e24.3,LOC108427093,LOC107549816,LOC107750208,LOC107671805 coding upstream 118217 32651304 ~ 32656857 (+)
LOC120568820 LOC101162955,LOC103374738 coding upstream 188725 32575313 ~ 32586349 (+)
LOC120568570 NA coding upstream 288666 32472620 ~ 32486408 (+)
LOC120568571 NA coding upstream 333979 32437458 ~ 32441095 (+)
myadmb LOC104961532,LOC101466547 coding downstream 67417 32843099 ~ 32852397 (+)
ltb4r2b NA coding downstream 153769 32929451 ~ 32938337 (+)
sdr39u1 sdr39u1 coding downstream 165524 32941206 ~ 32945386 (+)
parp2 parp2 coding downstream 177594 32953276 ~ 32973757 (+)
apol1 LOC106928621,LOC103148595,LOC106953189,LOC103370244 coding downstream 275323 33051005 ~ 33070053 (+)
G119583 vangl2,LOC103367097 non-coding upstream 4120 32770428 ~ 32770954 (+)
G119579 NA non-coding upstream 17421 32757383 ~ 32757653 (+)
G119556 NA non-coding upstream 64702 32709295 ~ 32710372 (+)
G119541 NA non-coding upstream 140355 32633628 ~ 32634719 (+)
G119519 NA non-coding upstream 210588 32563841 ~ 32564486 (+)
G119586 NA non-coding downstream 17335 32793017 ~ 32793495 (+)
G119622 pex19 non-coding downstream 60399 32836081 ~ 32837200 (+)
G119623 pex19 non-coding downstream 61621 32837303 ~ 32838088 (+)
G119624 NA non-coding downstream 63322 32839004 ~ 32840813 (+)
G119638 NA non-coding downstream 121049 32896731 ~ 32897048 (+)
G119582 vangl2,LOC103137974 other upstream 5222 32768707 ~ 32769852 (+)
LOC120568569 NA other upstream 303504 32452705 ~ 32471570 (+)
cadm3 cadm3 other upstream 548591 32128458 ~ 32226483 (+)
LOC120567694 LOC103373937,LOC106569580,LOC100136182,LOC107383461,LOC106960171 other upstream 703762 32067563 ~ 32071312 (+)
pip4p1a tmem55b,LOC101161334 other upstream 860370 31888908 ~ 31914704 (+)
G119585 NA other downstream 5306 32780988 ~ 32781471 (+)
tep1 LOC104950563,LOC104941471 other downstream 213135 32988817 ~ 33049081 (+)
LOC120568463 NA other downstream 388234 33163916 ~ 33166100 (+)
G119769 grk7,LOC106528614,LOC104920904 other downstream 529140 33304822 ~ 33307864 (+)
pkn2a pkn2 other downstream 701654 33477336 ~ 33515424 (+)

Expression


Co-expression Network