XLOC_004728 (CR385067.1)


Basic Information

Item Value
gene id XLOC_004728
gene name CR385067.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 25073305 ~ 25075120 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009368
tttaaaacgtTTTAGATATGTAATATGAACATCATTTTAAAGTTTTTGGTGCATTGATCAATTGTGTGAGCAGATTTTGAATTTGTGGTAACAAAAGCTTAGCTACGGTAATCATTTGCgtttttcttttagtttaatTTGTTGTGAAACTTTGGTAATGTGAATGTTctacaaattgtattttaatttaattttaaaatgtgttatctGCATTCATTTCTCTTAATAGATGAGGAGGAGGAAGTGAAAACTAAAAAGAGTAAGGTAGCAAAGTTCTTCAAAGCTACCACAAAACTCTTTGGGATGTCCTGCTTTCGTCAGGCTGAGGAGCAGCTCTCTGACTCTGAAGGCTCTGATGCAGATGACTTTCTGTGCCAATCCCAGTCTGATCAGAGTCTGGAGGTTGCTCCGGACATCGTTCATGAAGTGAGCTGTGTGATGGACGACCTAAAGGTGGACGAGACAAATGACTTGACACTCAACGTAGAGTACGTcaaaaaagaggaggaggaggagatgagAATGAATGATGAGAAGAACACAGAGGAGGACAAGATCAAaaagagaaagaggaggaggaggaatagGATGAAAGAGGAGAATGAGATGAAGATGAAAGAGGAGAGgttgacagaaaatgaagagaagGAGAAGAATGAGGAGATGGTGAAGATGAACaaggaaagaatgaaagaaaatgaaGAGAAAGAGGAGAAGAATGAGGAGATGGTGAAGATGAACaaggaaagaatgaaagaaaatgaaGAGAAGGAGAAGAAGAATGAGGAGATGGTGAAGATGAACAAGGACAGAATGAAAGAAAATGAAGAGAAAGAGGAGAAGAATGAGGAGATGGTGAAGATGAACAAGGACAGAATGAAAGAAAATGAAGAGAAGGAGGAGAAGAATAAGGAGATGGTGATAAAAGAGGAGATGATAACAGACAATGATGAGGTGGAGGAGGAGAATGAGGAAGAGAGGGAAAAGACAAAGGAGAAAGAGAAGAGAAAGGGAACAAAGAAAAGAAACAGCAAGATAATCAGACGAATGATGAGGAGGAGAAGCAAGAGAAGGAGAATGAGGAGAGTTTGaatcaaaataataattgaaaataaaaaaataaaaaaactggatggacaattctTAATTTATGGTCTAAAATATTAATATGCAAAAAAATTGCATGTCAAAAGAGTGCATGAACTGCTCTATCTTTCTGGCCTATAGTTAATGTGCACAAATAGTTGTACACAAAAGGGCAAGCACAACACAAGCTctactgaaaaaagaaaacactaagGGCACATTAACTTGATCAAAACAGTAATAAAAGTGAATTAATCAATGAGGACATGAAGagcacactgttaacaatttcctgtagaatctacaataACTCACTGGCAGCAGTTCAACAGTAATTTACTGCAAATCAGCAAGAATACTGATATTTATCTGCAATACGTGTATCTATAGTATTGTATTTCTTTACTGTAAAATctacagtcat
>TCONS_00010739
TCATTTCTCTTAATAGATGAGGAGGAGGAAGTGAAAACTAAAAAGAGTAAGGTAGCAAAGTTCTTCAAAGCTACCACAAAACTCTTTGGGATGTCCTGCTTTCGTCAGGCTGAGGAGCAGCTCTCTGACTCTGAAGGCTCTGATGGTAAATCATCATATTTATTTGTTGCTATATAAgtttataatgttataaataaattgtatatataataatttgtatgtttaaataatttgtattaatttcccTTTACCCAAAGTTTAACATCGCCTTGAGTGTAAAATTGACTAACTGCAGACATTTCTCTAGCAGATGACTTTCTGTGCCAATCCCAGTCTGATCAGAGTCTGGAGGTTGCTCCGGACATCGTTCATGAAGTGAGCTGTGTGATGGACGACCTAAAGGTGGACGAGACAAATGACTTGACACTCAACGTAGAGTACGTcaaaaaagaggaggaggaggagatgagAATGAATGATGAGAAGAACACAGAGGAGGACAAGATCAAaaagagaaagaggaggaggaggaatagGATGAAAGAGGAGAATGAGATGAAGATGAAAGAGGAGAGgttgacagaaaatgaagagaagGAGAAGAATGAGGAGATGGTGAAGATGAACaaggaaagaatgaaagaaaatgaaGAGAAAGAGGAGAAGAATGAGGAGATGGTGAAGATGAACaaggaaagaatgaaagaaaatgaaGAGAAGGAGAAGAAGAATGAGGAGATGGTGAAGATGAACAAGGACAGAATGAAAGAAAATGAAGAGAAAGAGGAGAAGAATGAGGAGATGGTGAAGATGAACAAGGACAGAATGAAAGAAAATGAAGAGAAGGAGGAGAAGAATAAGGAGATGGTGATAAAAGAGGAGATGATAACAGACAATGATGAGGTGGAGGAGGAGAATGAGGAAGAGAGGGAAAAGACAAAGGAGAAAGAGAAGAGAAAGGGAACAAAGAAAAGAAACAGCAAGATAATCAGACGAATGATGAGGAGGAGAAGCAAGAGAAGGAGAATGAGGAGAGTTTGaatcaaaataataattgaaaataaaaaaataaaaaaactggatggacaattctTAATTTATGGTCTAAAATATTAATATGCAAAAAAATTGCATGTCAAAAGAGTGCATGAACTGCTCTATCTTTCTGGCCTATAGTTAATGTGCACAAATAGTTGTACACAAAAGGGCAAGCACAACACAAGCTctactgaaaaaagaaaacactaagGGCACATTAACTTGATCAAAACAGTAATAAAAGTGAATTAATCAATGAGGACATGAAGagcacactgttaacaatttcctgtagaatctacaataACTCACTGGCAGCAGTTCAACAGTAATTTACTGCAAATCAGCAAGAATACTGATATTTATCTGCAATACGTGTATCTATAGTATTGTATTTCTTTACTGTAAAATctacagtcat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117590

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009368 False 1510 lncRNA 0.36 3 25073305 25075120
TCONS_00010739 True 1459 lncRNA 0.36 2 25073518 25075120

Neighbor

gene id symbol gene type direction distance location
XLOC_004727 calm3a coding upstream 114513 24952902 ~ 24958792 (+)
XLOC_004726 NA coding upstream 128801 24944172 ~ 24944504 (+)
XLOC_004725 fshr coding upstream 303115 24738962 ~ 24770190 (+)
XLOC_004722 nrxn1a coding upstream 432966 24342303 ~ 24640339 (+)
XLOC_004729 gch2 coding downstream 10631 25085751 ~ 25092570 (+)
XLOC_004730 pigf coding downstream 22634 25097754 ~ 25110974 (+)
XLOC_004731 CR848736.1 coding downstream 126423 25201543 ~ 25214727 (+)
XLOC_004732 mta3 coding downstream 148679 25223799 ~ 25284510 (+)
XLOC_004733 CR932077.1 coding downstream 236898 25312018 ~ 25430371 (+)
XLOC_004724 BX255907.1 non-coding upstream 507713 24565478 ~ 24565592 (+)
XLOC_004723 BX255907.2 non-coding upstream 654965 24418224 ~ 24418340 (+)
XLOC_004721 AL928656.1 non-coding upstream 858788 24214401 ~ 24214517 (+)
XLOC_004718 CU914155.1 non-coding upstream 1162356 23910832 ~ 23910949 (+)
XLOC_004735 NA non-coding downstream 427286 25502406 ~ 25504380 (+)
XLOC_004738 CR932018.1 non-coding downstream 573007 25648127 ~ 25648243 (+)
XLOC_004744 NA non-coding downstream 1414233 26489353 ~ 26491973 (+)
XLOC_004717 NA non-coding upstream 1137972 23812530 ~ 23935333 (+)

Expression


Co-expression Network