G120058 (pif1)


Basic Information

Item Value
gene id G120058
gene name pif1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33975828 ~ 33976887 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU161693
TGGGCTGAAGTTCGTGTCACTCCTGGACCTTTTGACCTGTTGTCCTGTTCCTGCTCGGGTCATCTTATTGGTGCGCTCCGCCAGCCCTGTGGGGGCCACTTTACCCCTCAGCTCATTCACCTTCTGGATGTCCTTTTGCTGCAGGGGGCTGATGGCCTCGAAGCTGCGGGGCAGACCGGCTTTGAGCTTCTCTCGGCCGCTCAGAGGCTTGCTGCTCTGCCGGGCCTGGTGTTTGACGCTCAGGGTTTTGAGGAAGAGGTTGAGCCGGTCAGGGGGGCAGTTGGAGATGAGCACCTGGGTGTTTTCGGGCAGCAGTTTGACGGTGCACTTCCCTTCTCTGGCGAACTTGGTGAAAAGTTTGAATTCTTTCAAATGGTAATTTTGCGGCACTTTCCCGTCGTGGACGCGGAGGATAATCTCGTGGAACTCATTCCGGCCCAGGACGACCGAGGCTTTACGGATGACCTGCCTCCGGGTGGCCTGGCCGGAGGCGTTAAGCTGCTCCACCGTCACACAGCACTGCAGCTGGCCGCCGTCCTCCCCGGATAACATCGCAGCGACTTCTTTTTGCCAACTTTGTTTTTAGAACAGGTTAGAATCTTTGTCTCTGTTCCGTTTTCCGTGCAGCTGCTGCCCCACTCCGGGAACGCGAGCACCGATTTTCAAATTGTCGCTGCGTGAATTCAGCCAATAGCCGAGCGACGCTGCGGACCAATCAGGGAGAGGGGGTTTAACAAAGCACCcaatgaaagaaagagaagggacGCCCCCCTGGC

Function

symbol description
pif1 Predicted to enable several functions, including 5'-3' DNA helicase activity; ATP binding activity; and DNA binding activity. Predicted to be involved in DNA duplex unwinding and DNA replication. Predicted to act upstream of or within DNA recombination; DNA repair; and telomere maintenance. Predicted to be located in mitochondrion and nucleus. Predicted to be active in replication fork. Is expressed in ectoderm; head; optic tectum; pectoral fin musculature; and proliferative region. Orthologous to human PIF1 (PIF1 5'-to-3' DNA helicase).

NR:

description
PREDICTED: ATP-dependent DNA helicase PIF1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161693 True 776 lncRNA 0.57 2 33975828 33976887

Neighbor

gene id symbol gene type direction distance location
dmbx1a dmbx1,LOC102206215,LOC102778954,LOC100697381,LOC103354234 coding upstream 37050 33929067 ~ 33938778 (+)
wls wls coding upstream 166152 33768879 ~ 33809676 (+)
scinlb LOC106958286,LOC106904251,LOC103149535 coding upstream 208049 33743259 ~ 33767779 (+)
ccdc18 NA coding upstream 246188 33701632 ~ 33729640 (+)
mtf2 mtf2 coding upstream 277042 33682701 ~ 33698786 (+)
ptger4c LOC104920997,LOC103353922,LOC100696844 coding downstream 28008 34004895 ~ 34007251 (+)
nr2f6a LOC104920957,LOC101167397,LOC106911939 coding downstream 266951 34243838 ~ 34253143 (+)
angptl4 LOC103369125 coding downstream 448412 34425299 ~ 34432504 (+)
mast3a LOC104920969,LOC103357775 coding downstream 553668 34530555 ~ 34565654 (+)
ifi30 NA coding downstream 641665 34618552 ~ 34622369 (+)
LOC120569017 NA non-coding upstream 105044 33867395 ~ 33870784 (+)
G119963 NA non-coding upstream 107142 33868386 ~ 33868686 (+)
G119961 NA non-coding upstream 107828 33867769 ~ 33868000 (+)
LOC120569016 NA non-coding upstream 108832 33861438 ~ 33866996 (+)
G119922 NA non-coding upstream 377171 33597873 ~ 33598657 (+)
G120059 NA non-coding downstream 6110 33982997 ~ 33983403 (+)
G120062 NA non-coding downstream 10545 33987432 ~ 33987907 (+)
G120069 NA non-coding downstream 35791 34012678 ~ 34012883 (+)
G120064 NA non-coding downstream 65665 34042552 ~ 34111347 (+)
G120120 NA non-coding downstream 167539 34144426 ~ 34146446 (+)
LOC120568585 LOC108244495 other upstream 18324 33955166 ~ 33957504 (+)
G119957 gadd45a,LOC106598934,LOC106568974 other upstream 115981 33858542 ~ 33859847 (+)
gng12a gng12,LOC104920945,LOC104956611,LOC103354642 other upstream 123891 33810968 ~ 33851937 (+)
pkn2a pkn2 other upstream 460404 33477336 ~ 33515424 (+)
G119769 grk7,LOC106528614,LOC104920904 other upstream 667964 33304822 ~ 33307864 (+)
mrpl34 NA other downstream 187193 34164080 ~ 34165852 (+)
LOC120568953 dda1,LOC105024194,LOC106568965,LOC104920954 other downstream 190089 34166976 ~ 34172309 (+)
G120200 NA other downstream 340261 34317148 ~ 34317766 (+)
rps28 NA other downstream 423861 34400748 ~ 34404001 (+)
G120249 rps15,rig,rs15 other downstream 476835 34453722 ~ 34457611 (+)

Expression


Co-expression Network