LOC120568953 (dda1,LOC105024194,LOC106568965,LOC104920954)


Basic Information

Item Value
gene id LOC120568953
gene name dda1,LOC105024194,LOC106568965,LOC104920954
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34166976 ~ 34172309 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU161770
ACAGACGAACAACAAAAATGGAGTTGTGAACTAGTAGCAAGTTAGCTTCAAAGCACGttcaattttcagtttttgtgtAATTACCTCTACATGAGTGGGAGTTTCCAGCTGATTGAAGTGGCGTGATGCAATCGTATCGAAGTCATACTTAGTCAAGTCGTAAGAAGCTGTCGAGCGGGTAAACAAACCGGTATCTTGGCTACGACAAAGACAACAAGgcttagctagttagctagctaaaacgCTAGCATCTGCTCCTTTTGcctctaacgttagctagctagctagttaacgaACGAAGAGCGTGACTCGGACAGAAATGGAGAAGAACCGCCGACCATCTGTGTATCTTCCAACCCGGGAATATCCATCAGAGCAGATCATAGTCACAGAGAAGACAAACATCCTGTTGCGATATCTCCATCAACAGTGGGACAAAAAGAATTCAGCAAAAAAGCGAGAGCAGGAACAAGGAGAGGGGGAGAACACGGCGCCGCCACGGAAAATCGCAAGAACTGACAGTCGGGAACTGAACGAGGATTCGTGAATTGCTGTGCTGTTGATGCGCACCCAGCAGAGACTGACCTGTACAAACAAAATGCAGTATGCGGAATAAATGTTTGCAAACACAGGCCTTGACACTGAAGCCCTCAAGGATCCATTACAGTTCAGACCACAGCCGTCATGACGTTAGTCCCCAAAAAACATTGGTCATAATGTTAGCATTCAAATTCAGATTTCCTCCTTAACCAAACACTTTTTTCCTCAGTTCGTTTACTACTTTTGAccagtattttttttccttccaagACACCTCTGCCTCAGATTTCAGTCTTTGTAGTgtaaaaaaattatacttctaccTCCTTATTCCTCAAACCCTCTGATTTTTCCTAACTTATGCTCAAAGCtttcttttaaagtgctcatattatgctttttggcttttcccctttcctttattgttatacatctttttttgtgcaagttatgggtttacaaagtgaaaaagcccaaagtccaccccaaagggacttaccatctccaacagaaaacactgttcaccaactgctccaaacagctctattgtagtccagcctttacttcagagacaaacgtgggtcactttgtaacacacgttataatgttcgcctagctgctagcgtggcacgccctcattctctgcttctgactggctagtagtccttacctagctactgcgcatgtgcgactcccaacaaagatggaacagaagtgagatgcctcactctgtagctaaaacagagagctcaacgcacagggtgaaaagaggagctgcagcaatgtgtagtaccacaaaaatatggtgttttttgaaaattaaaccatgtaaacctattctgatataacctctaaattatgaacctgaaaatgagcataatatgagcactttaaagggaGACTTTGCAGATttgaatccagctctgtgtcatctttgtgtgggcggTGTGTTTAGGGGAACTGTGGCTTTGCTCCACAGTGCCAGTGCACAGCGCTCGGAGCAGCCAGGGTCTGCCGAGACCCCGCCGGATCGATTGACTCGACAGCCCTCCGCTCCTCTGGTCAGCTGGTCGCTCCGTACACTGCGACTGTGGATGGAAGCCACGCACCATTCATCTGCACagactgccatgacacagagctggttttAAATCTGCAAAATATCTCTTGAAATATGCAGCTGCTCTGCTATTTAAGGGTTTACAACTGTAGTTATTCATACCATCTGCATGTTTTAATGTAAGTCTACATAAGTAATTAAGTGGCATGCCATCTTTTGTGGCTCCTACTcgaataggattttttttagttttgaatTACATAAGGACTGTggtcctttttaaaatattattttagcTCATCCTCCATGTGATAACTGTCATTACAGTAACTGAAAATAAAACTGCATTGTGTTGCGTTGTTTAGATTTAACCATGCATTTCAGGGTTCGTTATGGACGGTTGCAGAAAAAGCCGAGCACTAAAAGAAATGTTCCGGTGTTTTCTCCTGATGAATAATGATTTATTGCCTTAAATGGAAGCGAGTGTGTTTTCACTATGTCTTAGAACGACCCCCTAGGTTTACACCGTTGTTTCAGGTGAAGAAATGACCCACGGTGGAGCTGAGCGGATGTTCGCGTGTCTATAAAGACCCGTTCGAGCCAATACAGTCCTACTAGAGGATGCAGTTTTTGTACAGCGTGACCTGCAGATTTTGTAGCCGTATTCTAAGTTTGATGCTCGGTAATTTGAGATCCCCCACCttatgtcactcttatgtagataccttcaagtaaagtgttaccccaCACTATTTTATGGAATGAGGATGACTACAGGTATGCTTAAATTTACAACTTAGCTGCACTGATGCGTAGGCTACTTGTAAGAAGAACTGCCGTCGTTTGCTTGAACAGGTTGCTTATTTGAGTTAACTATGTGTTTGGATTTACAAGCTTTTGACAGCAGGTTAAAAATAAAGAGTCTGTGTTTGCTGCTCATAAAGTCGGTGAAGCTAGTGCTTCACAAGTCTTGTATatttgtacagtatgttatgTTGTGGTTGTTCTGACCCTTTTATCAGTTAACAAGACAGCGACTCACTCTGGTTTGGTCTTAGCCATATTGTTATTTCATTTTGCCAATTTGTACTTGTATGTTGGAGTGACACAAGCCAGAGTTTAGTCCATACAAACAAAAGCATTTTGCTTAATTTGCtttgcacctttaaaaaaaagaaaaaaaaagaaactcacTTTCCACATCTATAAAGACTAATTTGCTccaaaaaagttgttgtttggctgcattttcatttcatcatgTTTGGCACGGCTGACAGTTGAGTCTAATGTACATTTCTACTTTTGTTAACCCATTGCTGTTCAAAGATTACagagtatacagtacaggccaaaagtttggacacacctcattcaatgtgtttctttattttcatgactatttacattgtagattctca
>XM_039816715.1
AGGTACGTCGAATCTTGGAAGGTAACCGCCCCCGAACAGACGAACAACAAAAATGGAGTTGTGAACTAGTAGCAAGTTAGCTTCAAAGCACGttcaattttcagtttttgtgtAATTACCTCTACATGAGTGGGAGTTTCCAGCTGATTGAAGTGGCGTGATGCAATCGTATCGAAGTCATACTTAGTCAAGTCGTAAGAAGCTGTCGAGCGGGTAAACAAACCGGTATCTTGGCTACGACAAAGACAACAAGgcttagctagttagctagctaaaacgCTAGCATCTGCTCCTTTTGcctctaacgttagctagctagctagttaacgaACGAAGAGCGTGACTCGGACAGAAATGGAGAAGTCAGATTTCTTAAAGGGACTACCTGTCTACAACAAGAGTAATTTCAGCAGGTTCCATGCAGACTCTGTATGTAAAGCATCAAACCGCCGACCATCTGTGTATCTTCCAACCCGGGAATATCCATCAGAGCAGATCATAGTCACAGAGAAGACAAACATCCTGTTGCGATATCTCCATCAACAGTGGGACAAAAAGAATTCAGCAAAAAAGCGAGAGCAGGAACAAGGAGAGGGGGAGAACACGGCGCCGCCACGGAAAATCGCAAGAACTGACAGTCGGGAACTGAACGAGGATTCGTGAATTGCTGTGCTGTTGATGCGCACCCAGCAGAGACTGACCTGTACAAACAAAATGCAGTATGCGGAATAAATGTTTGCAAACACA

Function

symbol description
dda1 Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process and protein polyubiquitination. Predicted to act upstream of or within regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Orthologous to human DDA1 (DET1 and DDB1 associated 1).

NR:

description
PREDICTED: DET1- and DDB1-associated protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161770 True 3021 lncRNA 0.42 4 34167011 34172309
XM_039816715.1 False 747 mRNA 0.46 5 34166976 34169919

Neighbor

gene id symbol gene type direction distance location
ptger4c LOC104920997,LOC103353922,LOC100696844 coding upstream 159725 34004895 ~ 34007251 (+)
dmbx1a dmbx1,LOC102206215,LOC102778954,LOC100697381,LOC103354234 coding upstream 228198 33929067 ~ 33938778 (+)
wls wls coding upstream 357300 33768879 ~ 33809676 (+)
scinlb LOC106958286,LOC106904251,LOC103149535 coding upstream 399197 33743259 ~ 33767779 (+)
ccdc18 NA coding upstream 437336 33701632 ~ 33729640 (+)
nr2f6a LOC104920957,LOC101167397,LOC106911939 coding downstream 71529 34243838 ~ 34253143 (+)
angptl4 LOC103369125 coding downstream 252990 34425299 ~ 34432504 (+)
mast3a LOC104920969,LOC103357775 coding downstream 358246 34530555 ~ 34565654 (+)
ifi30 NA coding downstream 446243 34618552 ~ 34622369 (+)
LOC120568198 LOC104920972,LOC103369709,LOC102237980,LOC108244847,LOC102193504 coding downstream 520318 34692627 ~ 34707973 (+)
G120125 LOC104920953,LOC104954835,LOC103395859 non-coding upstream 8996 34153919 ~ 34157980 (+)
G120120 NA non-coding upstream 20530 34144426 ~ 34146446 (+)
G120064 NA non-coding upstream 55629 34042552 ~ 34111347 (+)
G120069 NA non-coding upstream 154093 34012678 ~ 34012883 (+)
G120062 NA non-coding upstream 179069 33987432 ~ 33987907 (+)
G120199 LOC107100640,LOC106535681 non-coding downstream 140480 34312789 ~ 34313388 (+)
LOC120568876 NA non-coding downstream 176971 34349280 ~ 34377895 (+)
G120237 NA non-coding downstream 261530 34433839 ~ 34435395 (+)
LOC120567793 LOC100694462,LOC104944857 non-coding downstream 300540 34472849 ~ 34492377 (+)
G120291 NA non-coding downstream 395876 34568185 ~ 34568765 (+)
mrpl34 NA other upstream 1124 34164080 ~ 34165852 (+)
LOC120568585 LOC108244495 other upstream 209472 33955166 ~ 33957504 (+)
G119957 gadd45a,LOC106598934,LOC106568974 other upstream 307129 33858542 ~ 33859847 (+)
gng12a gng12,LOC104920945,LOC104956611,LOC103354642 other upstream 315039 33810968 ~ 33851937 (+)
pkn2a pkn2 other upstream 651552 33477336 ~ 33515424 (+)
G120200 NA other downstream 144839 34317148 ~ 34317766 (+)
rps28 NA other downstream 228439 34400748 ~ 34404001 (+)
G120249 rps15,rig,rs15 other downstream 281413 34453722 ~ 34457611 (+)
pik3r2 pik3r2,LOC102792547,LOC100693657 other downstream 397085 34569394 ~ 34607756 (+)
pde4ca pde4c,LOC101063915,LOC100693394,LOC102791393,LOC102313416 other downstream 451967 34624276 ~ 34691620 (+)

Expression


Co-expression Network