rps28


Basic Information

Item Value
gene id rps28
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34400748 ~ 34404001 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU161901
CACGTGACTTCCTTTCCGGTCTAACCTGACAACATGGACGCCAGCCGCGTGCAGCCGATCAAGCTCGCAAGAgtCACCAAGGTGCTCGGAAGAACTGGTTCCCAGGGACAGTGTACACAGGTCCGTGTTGAGTTCATGGACGACAGCAACCGCTCCATCATCAGGAACGTGAAGGGTCCAGTCAGAGAAGGAGATGTGCTGACACTTCTGGAGTCTGAAAGAGAAGCCAGGAGGCTGCGATAgGGCCCGCTGAAGCTTTGAGGTGCCGAGTCCATACTGTGAAGCAGAAGGACCCCGTCAGTTTCAATTGAAATAGCCTACGATCTCATTTGTTCAGATGCTTTGAAATAAATTTGGTTATTAAGATGA
>XM_039816045.1
tgaattaaaaaaacaaacaagaagtaCAGTTGCCATATATCTCTGCCGTGCACCACGTGACTTCCTTTCCGGTCTAACCTGACAACATGGACGCCAGCCGCGTGCAGCCGATCAAGCTCGCAAGAgtCACCAAGGTGCTCGGAAGAACTGGTTCCCAGGGACAGTGTACACAGGTCCGTGTTGAGTTCATGGACGACAGCAACCGCTCCATCATCAGGAACGTGAAGGGTCCAGTCAGAGAAGGAGATGTGCTGACACTTCTGGAGTCTGAAAGAGAAGCCAGGAGGCTGCGATAgGGCCCGCTGAAGCTTTGAGGTGCCGAGTCCATACTGTGAAGCAGAAGGACCCCGTCAGTTTCAATTGAAATAGCCTACGATCTCATTTGTTCAGATGCTTTGAAATAAATTTGGTTATTAAGATGA

Function

NR:

description
PREDICTED: 40S ribosomal protein S28 isoform X2

GO:

id name namespace
GO:0006407 rRNA export from nucleus biological_process
GO:0006412 translation biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02979 RP-S28e, RPS28; small subunit ribosomal protein S28e

RNA

RNA id representative length rna type GC content exon number start site end site
TU161901 False 369 TUCP 0.51 4 34400801 34404001
XM_039816045.1 True 422 mRNA 0.49 4 34400748 34404001

Neighbor

gene id symbol gene type direction distance location
nr2f6a LOC104920957,LOC101167397,LOC106911939 coding upstream 147605 34243838 ~ 34253143 (+)
ptger4c LOC104920997,LOC103353922,LOC100696844 coding upstream 393497 34004895 ~ 34007251 (+)
dmbx1a dmbx1,LOC102206215,LOC102778954,LOC100697381,LOC103354234 coding upstream 461970 33929067 ~ 33938778 (+)
wls wls coding upstream 591072 33768879 ~ 33809676 (+)
scinlb LOC106958286,LOC106904251,LOC103149535 coding upstream 632969 33743259 ~ 33767779 (+)
angptl4 LOC103369125 coding downstream 21298 34425299 ~ 34432504 (+)
mast3a LOC104920969,LOC103357775 coding downstream 126554 34530555 ~ 34565654 (+)
ifi30 NA coding downstream 214551 34618552 ~ 34622369 (+)
LOC120568198 LOC104920972,LOC103369709,LOC102237980,LOC108244847,LOC102193504 coding downstream 288626 34692627 ~ 34707973 (+)
pgpep1 pgpep1,LOC103361119 coding downstream 310975 34714976 ~ 34719870 (+)
LOC120568876 NA non-coding upstream 22853 34349280 ~ 34377895 (+)
G120199 LOC107100640,LOC106535681 non-coding upstream 87360 34312789 ~ 34313388 (+)
G120125 LOC104920953,LOC104954835,LOC103395859 non-coding upstream 242768 34153919 ~ 34157980 (+)
G120120 NA non-coding upstream 254302 34144426 ~ 34146446 (+)
G120064 NA non-coding upstream 289401 34042552 ~ 34111347 (+)
G120237 NA non-coding downstream 29838 34433839 ~ 34435395 (+)
LOC120567793 LOC100694462,LOC104944857 non-coding downstream 68848 34472849 ~ 34492377 (+)
G120291 NA non-coding downstream 164184 34568185 ~ 34568765 (+)
G120295 NA non-coding downstream 213773 34617774 ~ 34618212 (+)
LOC120568809 NA non-coding downstream 364100 34768101 ~ 34771677 (+)
G120200 NA other upstream 82982 34317148 ~ 34317766 (+)
LOC120568953 dda1,LOC105024194,LOC106568965,LOC104920954 other upstream 228439 34166976 ~ 34172309 (+)
mrpl34 NA other upstream 234896 34164080 ~ 34165852 (+)
LOC120568585 LOC108244495 other upstream 443244 33955166 ~ 33957504 (+)
G119957 gadd45a,LOC106598934,LOC106568974 other upstream 540901 33858542 ~ 33859847 (+)
G120249 rps15,rig,rs15 other downstream 49721 34453722 ~ 34457611 (+)
pik3r2 pik3r2,LOC102792547,LOC100693657 other downstream 165393 34569394 ~ 34607756 (+)
pde4ca pde4c,LOC101063915,LOC100693394,LOC102791393,LOC102313416 other downstream 220275 34624276 ~ 34691620 (+)
LOC120568940 NA other downstream 1190877 35594878 ~ 35642033 (+)
G120716 NA other downstream 2001239 36405240 ~ 36405773 (+)

Expression


Co-expression Network