LOC120568917


Basic Information

Item Value
gene id LOC120568917
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34953325 ~ 34954407 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU162125
gtttacatggtttaattttcaaaaaacaccatattgttgttgtactgcacagctctctctcactgctgcagatcctcttttcacctggtttctgttttagctacagagtgagacctcttttcatcttcttcttctgtactatctttgattgcactcgcacatgcgcagtagctcagatgtagagcatgtcagctagctaactctagagacagaaTTTGGAGGATGCTACGTCATTGACGTCCGTTGAAGGACCGTTCCAATGTCGAGGATCCTCCGAATCCCACCAAGGACTGAGTCCTTCGTTCGGAGAAATCCCCATAGACGGCAAAGGATGCATATGTGTATCCTTTGCGCTCCCATATCACCCACAATCCTTTGCGCGCGGCTTTGTtggcttgtttaaaaaaattaaatggcgGACCTAAGCGGGAGTTGGAGCGGTATCGCTGACGGcgaaataatcatttaaatggacAAACGGAGGCTGTCACTGAGGATgggaaagcaaaagacaagCAGGGAGACAAGAGGCCAAAGAGAGATGAATAGCTAGATTATTTGCAAAAACCTATTAGAGATTGGCattctgaaaataaatgcattaaattta
>XR_005640805.1
TGGAGGATGCTACGTCATTGACGTCCGTTGAAGGACCGTTCCAATGTCGAGGATCCTCCGAATCCCACCAAGGACTGAGTCCTTCGTTCGGAGAAATCCCCATAGACGGCAAAGGATGCATATGTGTATCCTTTGCGCTCCCATATCACCCACAATCCTTTGCGCGCGGCTTTGTtggcttgtttaaaaaaattaaatggcgGACCTAAGCGGGAGTTGGAGCGGTATCGCTGACGGcgaaataatcatttaaatggacAAACGGAGGCTGTCACTGAGGATgggaaagcaaaagacaagCAGGGAGACAAGAGGCCAAAGAGAGATGAATAGCTAGATTATTTGCAAAAACCTATTAGAGATTGGCattctgaaaataaatgcattaaattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162125 True 610 lncRNA 0.44 2 34953325 34954407
XR_005640805.1 False 394 lncRNA 0.45 2 34953541 34954407

Neighbor

gene id symbol gene type direction distance location
LOC120568812 LOC102310619,LOC100692846,LOC108280567,LOC105903927,LOC106524909,LOC108427173 coding upstream 128504 34809892 ~ 34824821 (+)
trnam-cau_26 NA coding upstream 177176 34776078 ~ 34776149 (+)
trnam-cau_25 NA coding upstream 181104 34772150 ~ 34772221 (+)
trnar-ccu_3 NA coding upstream 181179 34772074 ~ 34772146 (+)
LOC120568807 LOC100693392,LOC103352799,LOC101161005,LOC103131440 coding upstream 186994 34743728 ~ 34766331 (+)
LOC120569116 LOC107667722 coding downstream 211251 35165658 ~ 35168716 (+)
LOC120567912 NA coding downstream 307151 35261558 ~ 35262902 (+)
LOC120567707 LOC106910133,LOC107834262,LOC106939220,LOC107373952,LOC104944801 coding downstream 477272 35431679 ~ 35443813 (+)
pold3 pold3,LOC107703443 coding downstream 1494630 36449037 ~ 36463662 (+)
LOC120567713 LOC107092464,LOC101065262 coding downstream 1611354 36565761 ~ 36583870 (+)
G120393 NA non-coding upstream 47935 34905146 ~ 34905390 (+)
G120391 NA non-coding upstream 56192 34896535 ~ 34897133 (+)
LOC120568810 NA non-coding upstream 155478 34792758 ~ 34797847 (+)
LOC120568809 NA non-coding upstream 181648 34768101 ~ 34771677 (+)
G120295 NA non-coding upstream 335113 34617774 ~ 34618212 (+)
G120397 NA non-coding downstream 10739 34965146 ~ 34965540 (+)
G120410 NA non-coding downstream 51187 35005594 ~ 35005806 (+)
G120411 NA non-coding downstream 55774 35010181 ~ 35011042 (+)
G120483 NA non-coding downstream 250705 35205112 ~ 35205709 (+)
G120497 NA non-coding downstream 365514 35319921 ~ 35320221 (+)
pde4ca pde4c,LOC101063915,LOC100693394,LOC102791393,LOC102313416 other upstream 261705 34624276 ~ 34691620 (+)
pik3r2 pik3r2,LOC102792547,LOC100693657 other upstream 345569 34569394 ~ 34607756 (+)
G120249 rps15,rig,rs15 other upstream 495714 34453722 ~ 34457611 (+)
rps28 NA other upstream 549324 34400748 ~ 34404001 (+)
G120200 NA other upstream 635559 34317148 ~ 34317766 (+)
LOC120568940 NA other downstream 640471 35594878 ~ 35642033 (+)
G120716 NA other downstream 1450833 36405240 ~ 36405773 (+)
G120717 NA other downstream 1451714 36406121 ~ 36406689 (+)
LOC120568208 LOC103361715,LOC100701557,LOC100700197,LOC101469035,LOC102215562,LOC102289753 other downstream 1925511 36879918 ~ 37087443 (+)
G120914 LOC103396775 other downstream 2348487 37302894 ~ 37306014 (+)

Expression


Co-expression Network