LOC120568208 (LOC103361715,LOC100701557,LOC100700197,LOC101469035,LOC102215562,LOC102289753)


Basic Information

Item Value
gene id LOC120568208
gene name LOC103361715,LOC100701557,LOC100700197,LOC101469035,LOC102215562,LOC102289753
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36879918 ~ 37087443 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU162630
ttTCCAGGGAACAGTAATGCAGACAGCGTGGTTCAGTACAAACTGCAGCAGCCGGCGATCGCTCGCTTCCTCCGCCTCATTCCTCTGGACTGGAACCCCAGCGGGAGGATCGGACTCCGACTGGAGACCTACGGATGTCCTTATACCTCTAACGTGGTGAGTCTGGACGGCGGCAGCAGCGGTCTGGCGTACAGGTTGAGTCCCGGGCAGAGGCGCGCGTCCAGAGAGGCCGTCTCTCTGAAGTTTAAAACC
>TU162632
caggtgTTCTCCCAGTCGCTGTGAACATGGCGGCCGCTGCAGTCAGTCCTGGACCGGCTTCCACTGTAACTGCTCTGAGAGCGGCTACAGCGGAGCCACCTGCCACAGCTCTGTGTACCAGCAGTCCTGCGAGGCGTACAAGCACAACGGCAACACGTCGGGACATTTTTATATCGACGTGGACGGCAGCGGACCAATCAAACCGCAGCTGGTCTATTGCAACATGACAgAGGAGAACACATGGATGGTGATTCAGCACAACAACACCGAGCTGACTAGAGTCCGGCCGTCTCCAGGGGTAAACCAGCATTCAGTCCAGTTTGACTACTCGACTGAAGAGGAGCAGCTATTGGCCGCCATCAGACAATCAGAGCACTGCGATCAGGAACTGTCCTACCACTGCAGGAAGTCCCGCCTCCTCAACACTCCAGagggcTCTCCGTTCAGCTGGTGGCTCGGTGGTCCCGGTCCCGGTCGTGTGCAGACTTATTGGGGCGGAGCTCATCCAGGCAGCCAGCAGTGTGTCTGCGGCCTGCAGGGCGACTGCGTGGACCCACAACACTACTGCAACTGTGACGCCGAC
>XM_039815567.1
AGGAGAGCTCGGTCGCCTCTCTCCTCCAGCAGCCGCCGGGCTTCTGTGCAGCCTCTCGCCGCCTCCTCATCATGGATCTCGGGACTAAAAGATTGGCTGGGATTATCGCTCAGGTCGCCCTGCTTCTCTCCAGCTCGTACGGGACAACCGGAGAAGAGGTGTGTGACAGCGCGCTGGTGTCCAACCTGCCGCCATCGTCCTTCAGGAGCTCGTCCCAGCTGTCCAGCAGTCACGCGCCGGGCTTCGCCAAACTCAACAGGAGAGACGGCGCTGGAGGCTGGTCTCCTCACACCTCAGACAGGTACCAGTGGCTGGAGGTGGACCTGGGCCAGCGGACCACCATCACCGCTGTCGCTACGCAGGGCCGCTACggcagctctgattggctgtcatcGTACCTGCTGATGTTCAGCGACACGGGACACAACTGGAAGCAGCACAGACGGGAGGACAGCATAGGGtctttTCCAGGGAACAGTAATGCAGACAGCGTGGTTCAGTACAAACTGCAGCAGCCGGCGATCGCTCGCTTCCTCCGCCTCATTCCTCTGGACTGGAACCCCAGCGGGAGGATCGGACTCCGACTGGAGACCTACGGATGTCCTTATACCTCTAACGTGGTGAGTCTGGACGGCGGCAGCAGCGGTCTGGCGTACAGGTTGAGTCCCGGGCAGAGGCGCGCGTCCAGAGAGGCCGTCTCTCTGAAGTTTAAAACCCTGAGGAATTCTGGGACACTGCTGCACGCAGACGGAGAGGGAGGACTCGGCCTCGGTCTGGAGTTGGAGAGAGGGaagctactgctgctgctcagaCAAGGTAGGACTTCATCCTCTGAACCCCGGCTCCTGGCTTCCCTCGGCAGCCTGTTAGATGATCAGCATTGGCACCATGTGGTGGTGGAGCGGCGCAGCTTTCACCTCAACCTCACTgtggacaaacacacagagagggttCAGATGCCCGCAGAGTTCAGCCACTGGGACATACAGCAGCTGAGTGTCGGGGCAGTCCAGAGCTCTCAGAAACCAGAAGTCTTCAAGAGGAACTTCCATGGCTGCCTTGAAAACCTGCTGTTCAACGACCTCAACCTGATAGACTTAGCTAAACACAACGACCACCACGTTACTGTAGTGggcaATGTGACCTTTTCGTGTGCTGAGTCGCTTTCCGTCGCCGTGACGTTCCCCGGCCCCCAGAGCTTCCTCCAGTTGCCAGGGCCGGCGGCGGCGTCCTCGTCCGGGGGCGTGTCCGTTGGGTTCCAGTTCAGGACGTGGAACAAGGCGGGGCTTCTGCTCACCTTTGAGCTGCCTCAGGAAGGGGGCGTGGTCTGGCTGTACCTGAGTGAGGCCAGACTGCGGCTACAGATCCATAAGGCTGGCAGGGCGCTGCTGGAGCTCACTAGAGGTTCAGCTCTGAATGACGGTCAGTGGCATGCGGTGGAGCTGAACTCCACGCGAGGTCACGTGACCATCGCCGTggatggagaaggaggaggCGTCGCTCATGCCAGCTACTCTGTCACTGCAGGGAATCGCCTCTTCTTTGGTGGTTGTCCTGCTGAAGAGGAGAGTCAGGAATGTAAAAACCCCTTCAACATCTTCCAGGGCTGCATGCGTCTACTCAGTGTGGACAACCAGCCAGTGGACCTGATGAAGGTGCAGCAAAGACTGCTGGGAAATTACAGCCACCTCCAGATTGACATGTGTGGCATCATTGACAGgtgTTCTCCCAGTCGCTGTGAACATGGCGGCCGCTGCAGTCAGTCCTGGACCGGCTTCCACTGTAACTGCTCTGAGAGCGGCTACAGCGGAGCCACCTGCCACAGCTCTGTGTACCAGCAGTCCTGCGAGGCGTACAAGCACAACGGCAACACGTCGGGACATTTTTATATCGACGTGGACGGCAGCGGACCAATCAAACCGCAGCTGGTCTATTGCAACATGACAgAGGAGAACACATGGATGGTGATTCAGCACAACAACACCGAGCTGACTAGAGTCCGGCCGTCTCCAGGGGTAAACCAGCATTCAGTCCAGTTTGACTACTCGACTGAAGAGGAGCAGCTATTGGCCGCCATCAGACAATCAGAGCACTGCGATCAGGAACTGTCCTACCACTGCAGGAAGTCCCGCCTCCTCAACACTCCAGagggcTCTCCGTTCAGCTGGTGGCTCGGTGGTCCCGGTCCCGGTCGTGTGCAGACTTATTGGGGCGGAGCTCATCCAGGCAGCCAGCAGTGTGTCTGCGGCCTGCAGGGCGACTGCGTGGACCCACAACACTACTGCAACTGTGACGCCGACCGCATGGACTGGGCTGAAGACTCGGGCCTGCTCACCCATGAGGAGAGCCTCCCTGTCAGGTCTCTGGTACTGGGTGACATCCAGAGGCCCGTGTCAGAGGCCGCCTACAGGGTGGGACCGCTCCGTTGTCATGGAGACGAGAACTTCTGGAACGCTGCGTTTTTCGACAAGGAGACCTCGTACCTCCACTTCCCCACCTTCCACGGAGAGCTGAGTGCAGACATCTCCTTCCTGTTTAAAACCACGGCCTCGTCCGGCGTGTTCCTGGAAAACCTGGGCATCAAAGACTTCATCCGGATCGAACTGAGCTCTTCTACTCGGGTGCTTTTCTCCTTCGATGTCGGTAACGGGCCGCTGGAGGTTCGCATGGACTCAAGCGTCCCTCTGAATGACAACCGGTGGCATCGCATCCGAGCCGAGCGGAACGTCAAGGAGGCGTCGCTTCGACTGGATGAACTTCCTGTCGCCACACAGGAGGCTCCTGCTGATGGGCACTTCCACCTGCAGCTCAACAGCCAGCTATTCATAGgaGGCACAGCGTCCAGGCAGAAGGGATTTCGGGGATGTATTCGCTCCCTGCAGCTAAACGGCGTCACCCTGGACCTGGAGGAGAGGGCCAAGATCACACCCGGGGTTCGAGCCGGCTGCCCGGGTCACTGCAGCAGCTATGGCTCACTCTGCCAGAACCAGGGCCGCTGTGTGGAGAGAGCCAACGGCTTCCAGTGTGATTGTGGCCTGTCAGCATACACCGGAGTTTTCTGCCATACAGAGGTGTCGGCCAGCTTCAAGTCGGAGACGTCCGTCAGCTACACCTTCAAGGAGAATCCGTACGAGTTGAGCGGGAACAGCAGCTCTCTGCCGTCCTCCATCTACTCCGACATGACGCTGAGAGGAGAGAACATCTCGCTGAGCTTCAGGACCAACCAGAGTCCGGCTCTGTTGCTCTACGTCAGCTCCCACTACAGAGAGTACCTGTCCCTGGTCATCAACAAGCACGatgtGCTGGAGGTGAGATACAAGCTGGACGGCAGCCGAGACGCTGAAGTGTTGAGGAGCAGAGTGAAGAGCCTGGCCAACGGACAACTGCACACTGTTACCATCAGGAGACTGACGGACTCTGTGTCTGTGCAGATCGACCAAAACGCCAGAGAAGACTTCAACCTGACATCTGACGGAGAATTCAGCGCCATCAAGACGTTGGTGTTGGGCAGAGTGCACGAGTCTGATGATTTGGAGCCAGACATGGCCAGGTTGGCGTCTCTCGGTTTCACCGGTTGTCTCTCGGTGGTCCACTTTAACTCCATCAGCCCTCTGAAAGCTGCTCTGCTCCACCCGGACACCAGCCCTGTCATCATCACCGGACCTTTAGTCCAGTCCAACTGCGGCTCCTCGGCGTCAGCCAATCCCTACGCAGCAGTGAACACACACCACCTGTCagACCAGTCTGGTTCAGTGGGTTCAGGTCAACCTTTAGTCAATGCCATCAGGACTgactctgctctgattggagGTGTCATAGCAGCGGTGGTCTTTGTGATTGTGACCGGCCTGGCCATCACTGCCAGCTTCCTCTACCGGAGAAAAGAGACGTATCGAAACCAGGAAGTGAAGGAAGTCAAACTGGAAGACAGCCCAGATTTCCCTTTCAACAACCAGACTGACTCCCAGAATGTCTCCTCTGAAAACCCAAAGGAGTATTTCATTTAACTGGGAGGCCTGACGAACTGAACAGGCCGGGGAGTCCTGCCACGCCTCAGGACTTTACACTGCACTCAGAGACCATGACCCACTTCTCTGGCTGCTCAGAATACGGAAAGCAAAAAAGGAACAATGCACACAGTTTTGGCAGTGCTGGACTTATGCAGTGTTGATATCCATGTAAATattcaaaaaaaatgtaaacgtgGAAGTGATGTCTACAGCTAACTAATGTCTCTGTTATGTTGAAAGGTTGCAAATACtctttgtttttaatgatttcGGTTAATCCGGGCGCATGGAATCGTGACTAGATTGGTTTGGCTGATGCTAGGAGGGTAATTAATGGATGTTTGCTTAAGTGGAAGTGGAAGTGTTTGACCTGTAATTAGCCCCTTAGGAAGAGTACTTCTTTAAGAGTGGTTTGTTGGCGTGTCATTTGTCATGTGCAGGGCTTCGGGGGAGAAACAGTGTGCACTCTTTAGAGGCTGTAGAGCCTCAGAGCTAAAGTTAAAGTGAAAACTGGGTGAAAATGTGCTGGCATTGTCAGAGTCCTCCCCACCTGCAAACATCCGCCAAATACCAAGGCATTGTTTTTCTAACcccaattcaattacattttatttatagtgtcagatcataacaggagttatctcagaaCACAGATAGAGTAGTTCTAGACCACactttataatttacaaagacccaacgaTTCCCCCCAAGAGAAATCATTTTGGTGCAACATTgttgaggaaaaacttccttttaaacaggtagaaaccttggacagaacCAGGCTCTTGAGTAATTTTGTTCCGGCAACATCGTTCTACCACAAAATGTTGGCATTAACAAGTGGcctcttcaattcaattcagttttattcgtagtatcaaatcataaaaagttatctcaagacactttaaaGATAGAGtatgtctagaccacactctataatttacaaagacctaacaattcccccaagagctagcatttagtgcgacagtggtgaggacaAACTCCCTTTTAGAAAGATACCTTGAATGGTGAGgacaaacttccttttaggcagaaacctgggacagacccaggctcttggtggacGGCATCTGTCCCTGCTGGtttggacacagagacactgatacagatatacagatatagagaaatgTGATTCAtcataattatagcagttggtatgatgaacagtggaaaTTATAGTTAGAATAAAGATAATgcaactatgactagaaataatagttgtagcagtccAGGGTGTAGCAGTGCGTAGCAGGGCAAAGTAGGGCGTAGAGCAGGACCACAGCAACAGCTttaaccatgatttaggtgccaccccaaTAGAAGGAAAACTGCGAgcgagaaaacataaggactccggggaataagttCCTTGGAGCTAGGTCTTCAAGGTCAACATAGTCCAATCATCGCCATGAGCACATTTGTCCTGTTTGAAAAATGTACACTGCAGTCTGGCAACCACTGGTCAAGAGACTTTTTATACCGTAGGGATtcatttccattcattttttttactcctttctttctttttctccctctcatacCTAGGTATTTCTTTCCATCAAATTATTTCTATTGTAACATGAAAGAACAATGAAAGCAGGGAGGAGAAAAACATCCATGAGCACTGAACACTACTGAAGTTCACTCTATTATAAAAGTTCTCTTGTCCATGCCGTATTCCACCTGCTGGTAGCTTTCTCTCCCAGCTCTCTGAACGTCTCTGAAGAGTAAAGCTTTTGACACTGACAGCAGCGCAGAGAGTAATACTGTGGCTGTCTGTCACCTCGTGCACTTCACGCAGAGACAGctcatgtgttttttgaaatGCTAATCTGCGTCGGCCTGGCAGGTGGATTGTGACTGGATGGAAAGCAGAGATCGAATCAGAATGAGACAGAGAGATTATCTGAGAAACATCTTCAAGCCAACATGGATTTCATAAAAACAGCAATTGTGCTATTCACACTTGTTGAAGATGaagaaatccccccccccctcgcccCACCATGTGTTAATTCAACTCATGTGTAAAGAGCGCTGGatgagaagcagagagaggaTCAACCGCAGCTGGTTATCAAACACACAGCACCGTCTCTCTGCAGGACTCCAGAGCACTGATGGGAATTTAATGACAAAAGTTGCTAAAACTTCAAAGTGCATTATTCatctctttgtttgtttgtttgtttgtttgttcccCACCTTACATCAGCTAAAGCCACACAGTGTTGTCTTTAGCCCTCTATTGCACGGGACTAGTACTACCTGGTGACCGCtagtaatttgtaataattacggaggttgtctgtgatcttaatcccctGTGCGAATCggccatgtctgtaatttgtgaagtaaaaattcccccgcaaatgacccaCCATATTTTGCCGAACACCGAGGTCCTGTggtaatattagtcccgtgcgaatcaaCGTGTCTGTGATTTGGCGGGGTCgtacatcacttttttcaaggtCTTTTTCATCCCTCTTGCGAAGATGGATATGGGATGGTGGGGGGCTGCGGACGCCCCGTTTTATGACCAACCTAGCCTGGACCACTGCCCGACCGGAGACCTCCGTACCTCGAGTTGATGCGCTCCCTGCAGCTTCATCCGAGGGCGGACGGCGATGCTGTGTGGGGGCCGCGGCTGCGGGGATAGGGTATGCACCTCCGGTAACCCTAAATTTAAGACAGTGTTAGGGAAAGGAACCTTTGCCTATATAGGGGCAAGTTAGACCGGCAAATTAAAGTCATTTCAAAAAGAGAATCAGGGCCTGGTTACTAGAGAGGGTAGCGGAATAGAGCAGAGGGCCGGTAAccgttttttattattattattattatttaagaaAAATGCTTTTCTGTTATGTCATTGATTATCACACACTCTGTAAGTGTCCTATCCTGATGTTATGTGTTGAGGACCACAGCGGAAATAAGTCCTGGacattattgtgtttttaatcctcgattgtatttgatgtctTTTCATGTCAACAATTCATTTCAATTGGACCTGGCCTAAAAAGTTACGGAACCCCGACCCAAGTGCGTTGCGGCAGCCCCGCCCTGGCCTGCCTCCGCGCGCCTCTGGGTAGCCAACTCTCGGGGTACAGATATGTcagtaatttaataataataataataataataaaagcagGCTTCACTTATCCAGTGTGAACCCGCCACACAAAACTCAGATGTGGGGGGGTGATTTCTAAATCACACGAGGTCCCCAGATACTTATCCCATGTGAATAGGGCTTTTGCCACATCCTTGATTCCAAAGGGTTGATTCTTTGGTGAACAAGAGGCAGCGACTGTCCTCCATCCTGCGGCAGAACTGACTGCAGTGCAGCACTCGATTGCTAAGAGGAACTCAACAGGTAACCTTGACAGCCAGACAATCTCGCAGAGCTCAACTGGAGCACACTGCATAACAATacagcaaaataaaatgtttatcaaGA

Function

NR:

description
PREDICTED: contactin-associated protein-like 4

GO:

id name namespace
GO:0007155 cell adhesion biological_process

KEGG:

id description
K24337 CNTNAP3_4; contactin associated protein-like 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
TU162630 False 252 lncRNA 0.60 2 36959931 36971438
TU162632 False 583 TUCP 0.59 4 37010999 37018790
XM_039815567.1 True 7518 mRNA 0.51 24 36879918 37087443

Neighbor

gene id symbol gene type direction distance location
LOC120568211 NA coding upstream 24075 36855196 ~ 36855843 (+)
LOC120568209 NA coding upstream 35268 36844011 ~ 36844650 (+)
LOC120568506 NA coding upstream 132250 36737148 ~ 36747668 (+)
LOC120568504 LOC103361716 coding upstream 169106 36624077 ~ 36710812 (+)
LOC120568503 LOC100700741,LOC103361717,LOC101470268 coding upstream 259322 36588654 ~ 36620596 (+)
LOC120567940 NA coding downstream 121862 37209305 ~ 37230711 (+)
LOC120567716 NA coding downstream 510371 37597814 ~ 37598425 (+)
LOC120569077 LOC103371209,LOC100691542,LOC101487415,LOC102308758 coding downstream 951638 38039081 ~ 38098246 (+)
LOC120567717 NA coding downstream 1015134 38102577 ~ 38103710 (+)
trnas-cga_7 NA coding downstream 1109598 38197041 ~ 38197122 (+)
LOC120568213 NA non-coding upstream 4524 36871351 ~ 36875394 (+)
LOC120568212 NA non-coding upstream 13778 36863793 ~ 36866140 (+)
G120796 NA non-coding upstream 60144 36819563 ~ 36819774 (+)
G120720 NA non-coding upstream 321186 36411744 ~ 36558732 (+)
G120714 NA non-coding upstream 475153 36404553 ~ 36404765 (+)
G120842 NA non-coding downstream 2007 37089450 ~ 37090881 (+)
G120860 NA non-coding downstream 48916 37136359 ~ 37136750 (+)
G120868 NA non-coding downstream 77405 37164848 ~ 37214610 (+)
G120872 NA non-coding downstream 112512 37199955 ~ 37200583 (+)
G120875 NA non-coding downstream 158795 37246238 ~ 37247868 (+)
G120717 NA other upstream 473229 36406121 ~ 36406689 (+)
G120716 NA other upstream 474145 36405240 ~ 36405773 (+)
LOC120568940 NA other upstream 1237885 35594878 ~ 35642033 (+)
pde4ca pde4c,LOC101063915,LOC100693394,LOC102791393,LOC102313416 other upstream 2188298 34624276 ~ 34691620 (+)
pik3r2 pik3r2,LOC102792547,LOC100693657 other upstream 2272162 34569394 ~ 34607756 (+)
G120914 LOC103396775 other downstream 215451 37302894 ~ 37306014 (+)
LOC120568367 LOC103371210,LOC101487706,LOC100534480,LOC102208811,LOC102309261,LOC104937382,LOC106522909 other downstream 902122 37989565 ~ 38019068 (+)
G121058 NA other downstream 1668241 38755684 ~ 38755931 (+)
G121171 NA other downstream 2304529 39391972 ~ 39392776 (+)

Expression


Co-expression Network