LOC120567603 (LOC103357602,LOC108239446,LOC104948981,LOC105934574)


Basic Information

Item Value
gene id LOC120567603
gene name LOC103357602,LOC108239446,LOC104948981,LOC105934574
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26890935 ~ 26899765 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814509.1
CTCCTTTGTTTCCGTTTCCACCGTACATCCATGGTCTTTCCCGTTGCAAAAGTCAAGTTTTGTTGTGTCCCTTGTTGCTACCCGTCGGTTTCTTACGAATCCTCCTGCTTAGAAATGGCTGAAGCTCCGCCACGGCCCTACCGGTTTTTTTGTCACCGGTGTTCAGCAGAGATTAGTCCGCGTTTACCGGACTACACCTGTCCACGCTGTGAATCTGGTTTCATTGAGGAACTGCCTGAGGAAAGAAGTAGTACTGAAAATGGGTCCGCATCCACGTCCTCCTTCAGTGATCAGAACCGCCCAGCCTTTGAGAGCATGGATCACCAACACTTGTTCACATTTCCCTCCGGGTATGGTCCGTTTGCCCTTGGGATTTTTGATGAGAACTTTGACCTTCGAACGCAGCTACCCACAGAGGACAACCGAGAGACAGAAAataggagagaaagggaaatgGCATCAAGGCAAAGATACAGTGCGCGGCAACCGCGCGGTCGACATGTTCCTCGACGACAGGGTACGCGCCATGAAGGAGTGCCCACATTAGAAGGAATTATCCAGCAGCTAGTAAATGGAATCATAGCACCTACAGCCATGCCAAATATGGGGATGGGACCATGGGGTATGCTACATTCCAATCCAATGGACTACGCCTGGGGTGCCAATGGTCTTGATGCTATCATTACACAGTTACTGAACCAGTTTGAAAACACGGGTCCCCCTCCTGCAGACAGAGAAAGGATAAAGAGTTTACCCACCATTACCATTACAGAGGAACATGTGGGTGCTGGTTTAGAGTGTCCTGTGTGCAAAGAAGACTACAGCGTTCAGGAGAATGTTAGACAACTGCCATGCAATCATTTGTTTCACAATGACTGTATAGTACCGTGGCTGGAACAGCACGATACGTGTCCTGTGTGCAGGAAGAGTCTTAGTGGTCAGAACACCGCCACAGACCCACCAGGGTTATCGGGAATGAACTTCTCTCCTTCgtcctcatcctcttcctcccccaGCTCACCTAGCAATGAGAACGCTGCCAGAAACTCCTAGGTTTTCACCGTCACCTCACAGCTGAAAACCTCACATACGTGCGTCAAACCCAACGGCTCCGAGCTGAAACCAGTCAAACTGTCTCAATTCTAGGGGGGGGCGATATGAGTCGAGCTGAACTCTGAATCTGTTGCAGACTTGAAGTCATCATTCCTCCCCCTGTACTGAATGGACACTGGGGTCCAGCTCCTGCTGCTATTGTTGCCGAGTATTTGAGGAGGTGAGACTGGGCAGTGTTGGAGGATCCAGAAAGGCTGTGAATAATGGTAAAAATGGTTTTGTGACCAGAACTGGAGCAGAGTTTAAGCCAGAGTGGACTGCTTTTTGATGGAGAAATGTCTTTGCCACGAGGCTGAGGCACATTTTATATTGAAAACACAGAatgctctttttttaaacatagccTGTGGAGGTGCAGAGTCCATAGATGTGTAGATAGAGAATTCATTTTCAACGGTCGGCCACTGTACAGCTAGGGGATCAAACTGAAACCTTGTGGGAAGGAAACTGGGTGTATGcatctgatttttatttatttgcactttttttattttgcacaaaATTATGTATGATGTTGAGAATGTGAATTTAGGTAAACTACTGAACAAAACAAAGATTTTGttttatgacttgtttttaTTAGATTCTCTCTTCATCAGAGCGTGGTCCAGTGTATTTGGTGCATCTTGACAAGGTAAAGATCCTCACAGCTCAACAGTGGACACATTCTCTACTTATTTATTGAACCCTTGCCCAAGACAGAAATTGAGcaatgcaaagaaaaaaaagacataaaaaggcATGGGAACATCTTACCTCTATAAAACTGGCCAAATGTGTTGCACAAAACaagtgttttattattttatttactgttttttcgTACAGTCACAATAAAGtgctaaaacaaa
>XM_039814510.1
CTCCTTTGTTTCCGTTTCCACCGTACATCCATGGTCTTTCCCGTTGCAAAAGTCAAGTTTTGTTGTGTCCCTTGTTGCTACCCGTCGGTTTCTTACGAATCCTCCTGCTTAGAAATGGCTGAAGCTCCGCCACGGCCCTACCGGTTTTTTTGTCACCGGTGTTCAGCAGAGATTAGTCCGCGTTTACCGGACTACACCTGTCCACGCTGTGAATCTGGTTTCATTGAGGAACTGCCTGAGGAAAGAAGTACTGAAAATGGGTCCGCATCCACGTCCTCCTTCAGTGATCAGAACCGCCCAGCCTTTGAGAGCATGGATCACCAACACTTGTTCACATTTCCCTCCGGGTATGGTCCGTTTGCCCTTGGGATTTTTGATGAGAACTTTGACCTTCGAACGCAGCTACCCACAGAGGACAACCGAGAGACAGAAAataggagagaaagggaaatgGCATCAAGGCAAAGATACAGTGCGCGGCAACCGCGCGGTCGACATGTTCCTCGACGACAGGGTACGCGCCATGAAGGAGTGCCCACATTAGAAGGAATTATCCAGCAGCTAGTAAATGGAATCATAGCACCTACAGCCATGCCAAATATGGGGATGGGACCATGGGGTATGCTACATTCCAATCCAATGGACTACGCCTGGGGTGCCAATGGTCTTGATGCTATCATTACACAGTTACTGAACCAGTTTGAAAACACGGGTCCCCCTCCTGCAGACAGAGAAAGGATAAAGAGTTTACCCACCATTACCATTACAGAGGAACATGTGGGTGCTGGTTTAGAGTGTCCTGTGTGCAAAGAAGACTACAGCGTTCAGGAGAATGTTAGACAACTGCCATGCAATCATTTGTTTCACAATGACTGTATAGTACCGTGGCTGGAACAGCACGATACGTGTCCTGTGTGCAGGAAGAGTCTTAGTGGTCAGAACACCGCCACAGACCCACCAGGGTTATCGGGAATGAACTTCTCTCCTTCgtcctcatcctcttcctcccccaGCTCACCTAGCAATGAGAACGCTGCCAGAAACTCCTAG

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF126-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814509.1 True 1964 mRNA 0.46 9 26890935 26899765
XM_039814510.1 False 1050 mRNA 0.50 9 26890935 26898854

Neighbor

gene id symbol gene type direction distance location
ndufa13 ndufa13,LOC102786334 coding upstream 71918 26815684 ~ 26819017 (+)
LOC120569005 LOC106935698,LOC103153539 coding upstream 77510 26792202 ~ 26813425 (+)
zgc:85843 tm6sf2,LOC104924838,LOC102294137,LOC102201647 coding upstream 218677 26666504 ~ 26672258 (+)
LOC120568699 slc25a24,LOC104964315,LOC103357622 coding upstream 302364 26580603 ~ 26588571 (+)
LOC120568740 NA coding upstream 325290 26559608 ~ 26565645 (+)
LOC120568413 LOC107384102,LOC105934594,LOC104929657,LOC103366675,LOC108239475,LOC103395958,LOC102222760 coding downstream 58901 26958666 ~ 26963795 (+)
sf3a2 sf3a2 coding downstream 93438 26993203 ~ 26997296 (+)
LOC120568316 LOC103366679,LOC104964519,LOC102791861,LOC100706611 coding downstream 138570 27038335 ~ 27090300 (+)
LOC120567789 NA coding downstream 231388 27131153 ~ 27134151 (+)
map2k2b LOC102194177,LOC104965132,LOC101484555,LOC102792644,LOC100697571 coding downstream 235236 27135001 ~ 27142915 (+)
G118164 NA non-coding upstream 66857 26821243 ~ 26824078 (+)
LOC120569008 NA non-coding upstream 106076 26781367 ~ 26784859 (+)
LOC120569009 NA non-coding upstream 127675 26743741 ~ 26763260 (+)
G118115 NA non-coding upstream 216484 26602656 ~ 26674451 (+)
G118135 NA non-coding upstream 226091 26662282 ~ 26664844 (+)
G118263 NA non-coding downstream 68739 26968504 ~ 26968990 (+)
G118265 NA non-coding downstream 76533 26976298 ~ 27055691 (+)
LOC120568996 NA non-coding downstream 120081 27019846 ~ 27021109 (+)
G118283 NA non-coding downstream 298418 27198183 ~ 27198459 (+)
G118303 NA non-coding downstream 344984 27244749 ~ 27244955 (+)
G118234 sugp1 other upstream 4905 26883559 ~ 26886030 (+)
LOC120567599 LOC101062208 other upstream 33541 26839178 ~ 26857394 (+)
G118149 NA other upstream 121024 26765492 ~ 26769911 (+)
prkab2 prkab2,LOC101470867,LOC107384083,LOC102226598 other upstream 290863 26590782 ~ 26600072 (+)
wdr47a wdr47,LOC102290984 other upstream 394126 26421454 ~ 26496809 (+)
tcf3a tcf3,LOC103366684,LOC104929652 other downstream 247296 27147061 ~ 27177206 (+)
LOC120569025 NA other downstream 279332 27179097 ~ 27182720 (+)
gpr35b NA other downstream 494758 27394523 ~ 27399396 (+)
LOC120568838 LOC103364371,LOC102207447,LOC101475014 other downstream 702235 27602000 ~ 27609718 (+)
LOC120568664 NA other downstream 804236 27704001 ~ 27705211 (+)

Expression


Co-expression Network