LOC120567605 (LOC101471767,LOC104938020,LOC102193348,LOC100709377,LOC103374359)


Basic Information

Item Value
gene id LOC120567605
gene name LOC101471767,LOC104938020,LOC102193348,LOC100709377,LOC103374359
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8079296 ~ 8085926 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814514.1
CCTGTCATCACATGAGGATGAACCGGCATTCCTCACACAGGCTGCTTGCAAAATTTACAGTGACAAGCAGTGCATTCATAGTCTCTGGGTTGGAAAACTCCAGGAACCTAGGGTAGCATCTTTAATACATCTTaaataatccttttttttttctagggcTGTTGACTTAAATTAAGCAGGCAACAGTTAGTTAATCACTGTCAGTGTGATCTGTGTGGACCTTCAGTAGCGTTTAGTGAGCCTCCTGAGGTGGTTGATCTTTCTCTCATCGTCATCATCAACAACATCATGACCATTAGCATCGCCCTGATCTGGGCAGTAGTGGTGGGATTCTGCTGCCTTCTATGGCTCGCTGTGGGGATACGACGCAGGCAACCTGGTGAACCTGCAGTTGAGAATGGCTTCATCCCCTACCTGGGTTGTGCTCTGCAGTTCGGAGCCAACCCTCTTCAGTTCCTCCGCAGCCGCCAGAAGAAGTACGGCCACATTTTCACCTGCAAGATCGCAGGCCagtacatccacttcctgtgtGACCCCTTCTCTTACCATTCAGTCATCCGACAGGGGAGACACCTGGATTGGAGGAAGTTCCACTTTGCAACATCTGTCAAGGCGTTCGGCCATGACAGCTTTGACCCTCGCCATGGCCACACCACAGAGAACCTTCACCAAACCTTTCTGAAGACGCTGCAGGGTGAGGCTCTGCCCTCCCTGATAGAGACCATGATGGGCCACCTCCAGGACGTCATGCTGAGGTCGGGCAAACTGAGCCCTGGCAAGGACCACTGGGAGGTGGATGGCATCTTTGCTTTCTGCTACAAGGTGATGTTTGAGTCCGGCTACCTGACTCTGTTTGGTAAAGAGCTCGGTGAAGACAAGTGTCAGGCCCAGCAGGCGGCTGAGAAAGCCTTGGTGCTCAACGCTTTGGAGAACTTCAAAGAGTTTGATAAGATCTTCCCTGCGTTGGTGGCTGGCCTGCCCATCCATGTCTTCAAGAGTGCTCACAGTGCCAGAGAGAACCTAGCAAAGACCATGCACGCTGAAAAGTTGTCCAAGAGAGAGAACATGTCTGATCTGATCTCTATGAGGATGATCCTGAATGATTCCTTATCTACCTTCAATGACGTGAGCAAGGCCAGGACCCACGTCGCTCTGCTCTGGGCGTCACAGGCTAACACCCTGCCTGCTACcttctggagtctcttttacatGATCAGGAGTCCCGATGCTATGAAAGGAGCCCGACAGGAATTGCAGAAAATTCTGGAGGATTCAGGCCTGACGGTGGACCCTAGTGACCCCACACTGAACCTGACCAGGGAACAGCTGGACAACATGCCTGTTCTGGACAGCATCATAAAAGAAGCCATGCGTCTTTCCAGTGCTTCCATGAACGTACGTGTTGCCAAGGAGGACTTCCTGCTTCACATGGACAACAATGAAGCTTACCGTATTAGGAAGGATGATGTCATTGCCCTGTATCCACCCATGCTGCACTACGATCCAGAAATCTTTGAGGATCCTTATGAGTACAAGTTTGACCGTTTCCTGGATGAGAAGGGTCAGGAGAAAACCACCTTCTACCGCAACGGCCGGCGGCTGCGTTACTTTAACATGCCCTTCGGCTCTGGCGTCACCAAATGCCCCGGCAGATTTTTTGCTATGTACGAGATCAAGCAGTTTCTGACTCTAGTGCTGTCCTACTTTGAAATGGAACTATTGGACCCTGCTATCAAAGCCCCCCCTCTTGACCAATCCCGTGCTGGCCTGGGAGTCCTCCAGCCTACTTATGATGTGGACTTCAAGTACAAACTGAAATCGAACTACTGAGCACTTTGTCAAACAGAGTGATTGAAGTACATATTGTACATAGTGTATATATTTAACCGTGTTAATGAAGATGCCTTGCAGTATATGTGAATAGACtgaattatgtattttttgttgctgtaattTGCTGCTGATGAACATGTATTCTGCATTTACAAACTGTTCAAACCCTTCATCTGGTAGTGTTGTACCAAACATTTCCTGTCTCTGTTGGACCAGACATCTGGCATCTCAGAGTAAAAGTGCTGAGTAGCATATCCAATTCCTGTGGACAGACCTAGAGCcatatacatttataaaataaatgggtttttttttggcatGTTTGGCCCATTTACccaaaatctaaatctaaaaattAATGCAAACAGTTTTTATCGTTGTTTTGAATAGATTCCACTATGCCAAATTACTGTATCATGGTTCTACATAGTAGACTCCTAAAATCAATCTGCAATTCTTGAGACAAGACAAGATAACCTTTTAAAGAATAAAAGTCTAGAAACTAGTTCTAAAAGAACTAGAaacttaaagctccattgtgtaatgttttgagttgattcttagcaaaaaaacctttgttcatgcacaaatatgtgctcattcatgtgtaattacttccaccaactaatcaaagatTTCTTGtca

Function

NR:

description
cholesterol 7-alpha-monooxygenase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00489 CYP7A1; cholesterol 7alpha-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814514.1 True 2478 mRNA 0.46 8 8079296 8085926

Neighbor

gene id symbol gene type direction distance location
tmem70 NA coding downstream 11847 8063083 ~ 8067449 (-)
LOC120568123 xpr1,LOC101080083,LOC103396762 coding downstream 56390 7971949 ~ 8022906 (-)
ttpa ttpa coding downstream 118229 7952012 ~ 7961067 (-)
asph asph,LOC103370744,LOC108250906 coding downstream 140519 7904205 ~ 7938777 (-)
shhb LOC104930803 coding downstream 209179 7866394 ~ 7870117 (-)
cntnap2b LOC101476225,LOC102211470 coding upstream 17475 8103401 ~ 8136557 (-)
ccr12a LOC101473018,LOC104945947 coding upstream 54306 8140232 ~ 8146892 (-)
LOC120568280 LOC104938035,LOC103362163,LOC102210891,LOC102784122 coding upstream 64298 8150224 ~ 8158788 (-)
LOC120569115 LOC103362161 coding upstream 92359 8178285 ~ 8187676 (-)
tgs1 tgs1,LOC106942483,LOC106912366 coding upstream 103477 8189403 ~ 8203101 (-)
G112903 LOC104931871 non-coding downstream 19263 8056602 ~ 8060033 (-)
G112902 NA non-coding downstream 33815 8044110 ~ 8045481 (-)
G112876 NA non-coding downstream 109962 7967433 ~ 7969334 (-)
G112877 NA non-coding downstream 112991 7964439 ~ 7966305 (-)
G112887 NA non-coding downstream 153104 7924102 ~ 7926192 (-)
G112897 NA non-coding upstream 53524 8139450 ~ 8192584 (-)
G112922 NA non-coding upstream 124901 8210827 ~ 8211057 (-)
G112924 NA non-coding upstream 126194 8212120 ~ 8212771 (-)
G112923 NA non-coding upstream 129983 8215909 ~ 8219170 (-)
G112980 NA non-coding upstream 368565 8454491 ~ 8454705 (-)
cdh6 LOC103366829,LOC104926815 other downstream 915626 7076609 ~ 7163670 (-)
si:ch211-267e7.3 LOC103370300 other downstream 1089174 6956440 ~ 6990122 (-)
zmynd11 zmynd11 other downstream 1342784 6695610 ~ 6736512 (-)
LOC120567959 NA other downstream 1900410 6172281 ~ 6178886 (-)
G112328 NA other downstream 2226849 5793163 ~ 5852447 (-)
trnak-uuu_16 NA other upstream 401541 8487467 ~ 8487539 (-)
G113070 NA other upstream 694526 8780452 ~ 8790042 (-)
chd7 chd7,LOC103370133,LOC102782711 other upstream 1028458 9114384 ~ 9194872 (-)
LOC120568397 NA other upstream 1314861 9400787 ~ 9510497 (-)
brinp2 brinp2,LOC103369811 other upstream 1954760 10040686 ~ 10267078 (-)

Expression


Co-expression Network