lrrc24 (LOC103370491,LOC104954089,LOC102776146,LOC102302164)


Basic Information

Item Value
gene id lrrc24
gene name LOC103370491,LOC104954089,LOC102776146,LOC102302164
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12074976 ~ 12089561 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814520.1
CAAGCAGGGATAATTAAAGGAGTCGGTCACTATTGGAAGATAGCATCCACGTTGAGGGAAAAGGCGAGGGAAAGGGGAAACGAGTCAAAGCCGCATAACAATATCAGAGGAGGGAGATAAGAGTTTAAATCGACCTCGATCAGCGCTGACGTCCAGCGTTGGCAGATGCGAGCAGTTTGCTCCGGCTCTCGGCATTCAATTACAATGGACGAGCTCAGCCTGTGCGGACTCTAAATCGCTGCCCAGTCAGGACCGAGTGAAAAAAAGCGAGCGGAGGGAGGCAAATAATGCTCTGGCTCATTTATTTGCAGTGATTTGAAGTGGGgttcatcttcttttttttttcttttttttattgaattttttttaattccaagTCGCTCGAGCAAGTGTGGAGACTGCTGCCAAGATCAAGTCCACGCACGCAGGGAAAACGgtTTTGTCTCTGAAGGTCTAACATAAAACCGCCATGGTCCTCTTGCGGTTCTCCAGACTCGTCCTAATCATCGTGGCCCTCATCCCTCGACCGTCTGCGGGATGCCCCTCTGGCTGTCGCTGCTACAGCCTCACAGTGgagtgcggatctcttgggacCAAAGAAATCCCACAGGATGTCCCCTCTGTCACCGAGACCATATTCCTGCAGGACAACGCTATAGTGCAGATTCGTCTTCAGGACCTTACTCGCCTTGGCAGCCTCCATTACCTCTACCTTCAGAATAATAGCATCTCAGCTCTGGAGCCTGGGGCGTTTCTCAGCCAGGGGCAGCTGCTGGAGCTGGCCCTCAATGGCAACCTCATCCACCTGGTCACCCCAGACATGTTTCGGGGTCTGGAGCACCTCCGGATCCTGTACCTCGCCGGGAACCAGATCACTAGAGTGCAGGACTACACTTTCAGGGGACTGCAGCGTCTGCAGGAACTCCACCTGCAGGAAAACAGCATAGAGCTGCTAGCAGAGCAAGCTCTGTCTGGCTTGTCATCTCTGGCCCTGCTAGACCTCAGCAGAAATCACCTCCGTACCCTGGGAGCCTCGTCCCTCAAACCGCTCGTGAGCCTGCAAGTGCTCCGTGTCACAGAGAACCCATGGCGTTGTGATTGTGCTCTGGGCTGGCTGAGAACCTGGATCAGTGAAGACGGACAGCGTCTGTTGAGCTCTGCCGAACAGCGTCGGCTGATGTGCTCTGAACCGCCTCGCCTCTCCCACCTCAGCCTGGTGGAGGTGGCTCCCAACAGCCTGGTCTGCATCCCCCCTGTGGTGCAGCTCGAGTCCAGCCACCTGACTGTGCGACTAGGGGAGAGCCTCAGAGTCTCCTGCCAGGCTTCGGGATACCCTCAGCCTCAGGTGACCTGGAAGAAAGCCTTGCATGGCAAGGCCCAGTTATCACCTCGAGGCTTGGTTCAAGAGCTGGGACCCAATGGTGAGCTCCTCAGGCCTGGATCTGGAGGGATGGTGACAGCCTTGCCCAGCAGTGGAGGGATCAAGGTTGGGGGTGTTGGAGGAATCCAGGGACTTGTGCGTGGGACTGAGGAGGGCGGCGAGAGGGACAGCTTTGATCCAGACATGGGCAGCGGCATGCTGTTCCTCAGCAATGTGACTGTAGCGCATGCTGGGCGCTACGAGTGTGAAGCCTGGAACCCTGGTGGTGTTGCCAGAGTTACCTTTCATCTGGCTGTCAACGTGTCTTCTTCATATTCATCCCAGTTCTGGCCTCGTTTGAACATGCACTCCTTTGTTTCCTCTTCATCTAACTCCTTCTATCAGCCAGAGGTTCTGGATGTTAGCCAGGAGCTGCTCTATGAACAGGACAGCATGGACTTCTATGCTCTTGGCCCTGCTACACAGACCGCCATTGCTGTTGGCATCTCCTTGCTGGCACTCACTGCCATTCTCCTCTTGATTATGATCTACACTCGTCACCAACAGTACCGCAAAGAAGAAGGCGGCTCCTACTGTACCAGCAAGGAAGAGAGCATCCTCTATGTGAACGACTACTCAGACGGACCCACCACATTTGCGCAGCTGGAGGAGTACCGCGATGACCACGGCCACGAGATGTACGTACTCAACAGAACCCAGCCCGTCCTGGGCTCCACTTCATCCAGGTGTCCCATGATGAGTGGGTTTGTCCAGCAGAAGGGTATGAAGGAGGCCCTCCTGGACCACGAAATGGTGCAGACACTGACCAGATCAGGGGGAATGGGGCTTCGCAGAAACCCAGCAGATGGAGGCGAGGGACCCTTAACAACAGACCCAGAGGAGCTCTTCCTCAGTCAGAGTCTCCTCTTCGGATCTCAGGTTGCCTATGAGATCCACTGCTAAGGGGTTTGAATTGTGTgctaaatcaaacacaatatGTTGATGGACTTAATTAAAGACATGGAAATGAAATCACTTTGGTGCAATGATTTGAAGCATCATATTATTTTGTGGGACTCCAAAATAGGGTACAGTTAGTTGTGGCTGGGGGAAACCTGGATCACAATCAGCCTCTCAGAGATCCTCATCTAATTGATTGTATGACATTAAGCTGGATCAGAGGGGTGAACATTAATATATAGGGAAAGTAACAACTGAACCATACCTGTCTTCTCCAAATCAATCCTTTAAAGATAATTAGTGGTTAACTTTATCTGAAATAGTTTGTTTGAAAGTTCATCTCAATCCTCACAAAAGAGGCTTAGACTGGGCAACACATAGTGGCAACTAACAAATATGGATTTAACCAGTGAGTCATATTTTGTACTCTTCTttaggttttgttttgtgtgttttgtcagtgttttgtgTAAATATAATGAAGTTAATTTTCACTGTGAAGTGCAGATGTTTTGTGGACCTTGTTGCAGATCCCATTAGAAGTAGACCTAAACCGTTCCTCTTACTGAAACTACATTGTCATTACCCATATGTGTGTGGGCGTGGGTGGGTGGTTTTGTTTAAAGAGGTTCATTTCGAATGCAGCaaagtctgtttgtttttttacatttctaccATGGCATTGTATTTCTGATGTTAATATGTGTTTTTTCTGCTTGTTTGTCGCAACACTAGAACAAGGAATTAACATTTCTATTGTCTGAAATGGAATCTTTGGTGGAATTAATTCCATTAACATCAGTCTGTAACAACCACTCCAATGTgaatattgtacattttgtcTTCTacataataaaatgtattttaaaaaa
>XM_039814521.1
aaGACACTGTAATTCCATGATGGATTAAAACGCTTCTGGATGGCCTACATGGAGGACCTCATTGAAACGGAGCACGTCTCTTCTAAACGAAATATCGCTCGAGCAAGTGTGGAGACTGCTGCCAAGATCAAGTCCACGCACGCAGGGAAAACGgtTTTGTCTCTGAAGGTCTAACATAAAACCGCCATGGTCCTCTTGCGGTTCTCCAGACTCGTCCTAATCATCGTGGCCCTCATCCCTCGACCGTCTGCGGGATGCCCCTCTGGCTGTCGCTGCTACAGCCTCACAGTGgagtgcggatctcttgggacCAAAGAAATCCCACAGGATGTCCCCTCTGTCACCGAGACCATATTCCTGCAGGACAACGCTATAGTGCAGATTCGTCTTCAGGACCTTACTCGCCTTGGCAGCCTCCATTACCTCTACCTTCAGAATAATAGCATCTCAGCTCTGGAGCCTGGGGCGTTTCTCAGCCAGGGGCAGCTGCTGGAGCTGGCCCTCAATGGCAACCTCATCCACCTGGTCACCCCAGACATGTTTCGGGGTCTGGAGCACCTCCGGATCCTGTACCTCGCCGGGAACCAGATCACTAGAGTGCAGGACTACACTTTCAGGGGACTGCAGCGTCTGCAGGAACTCCACCTGCAGGAAAACAGCATAGAGCTGCTAGCAGAGCAAGCTCTGTCTGGCTTGTCATCTCTGGCCCTGCTAGACCTCAGCAGAAATCACCTCCGTACCCTGGGAGCCTCGTCCCTCAAACCGCTCGTGAGCCTGCAAGTGCTCCGTGTCACAGAGAACCCATGGCGTTGTGATTGTGCTCTGGGCTGGCTGAGAACCTGGATCAGTGAAGACGGACAGCGTCTGTTGAGCTCTGCCGAACAGCGTCGGCTGATGTGCTCTGAACCGCCTCGCCTCTCCCACCTCAGCCTGGTGGAGGTGGCTCCCAACAGCCTGGTCTGCATCCCCCCTGTGGTGCAGCTCGAGTCCAGCCACCTGACTGTGCGACTAGGGGAGAGCCTCAGAGTCTCCTGCCAGGCTTCGGGATACCCTCAGCCTCAGGTGACCTGGAAGAAAGCCTTGCATGGCAAGGCCCAGTTATCACCTCGAGGCTTGGTTCAAGAGCTGGGACCCAATGGTGAGCTCCTCAGGCCTGGATCTGGAGGGATGGTGACAGCCTTGCCCAGCAGTGGAGGGATCAAGGTTGGGGGTGTTGGAGGAATCCAGGGACTTGTGCGTGGGACTGAGGAGGGCGGCGAGAGGGACAGCTTTGATCCAGACATGGGCAGCGGCATGCTGTTCCTCAGCAATGTGACTGTAGCGCATGCTGGGCGCTACGAGTGTGAAGCCTGGAACCCTGGTGGTGTTGCCAGAGTTACCTTTCATCTGGCTGTCAACGTGTCTTCTTCATATTCATCCCAGTTCTGGCCTCGTTTGAACATGCACTCCTTTGTTTCCTCTTCATCTAACTCCTTCTATCAGCCAGAGGTTCTGGATGTTAGCCAGGAGCTGCTCTATGAACAGGACAGCATGGACTTCTATGCTCTTGGCCCTGCTACACAGACCGCCATTGCTGTTGGCATCTCCTTGCTGGCACTCACTGCCATTCTCCTCTTGATTATGATCTACACTCGTCACCAACAGTACCGCAAAGAAGAAGGCGGCTCCTACTGTACCAGCAAGGAAGAGAGCATCCTCTATGTGAACGACTACTCAGACGGACCCACCACATTTGCGCAGCTGGAGGAGTACCGCGATGACCACGGCCACGAGATGTACGTACTCAACAGAACCCAGCCCGTCCTGGGCTCCACTTCATCCAGGTGTCCCATGATGAGTGGGTTTGTCCAGCAGAAGGGTATGAAGGAGGCCCTCCTGGACCACGAAATGGTGCAGACACTGACCAGATCAGGGGGAATGGGGCTTCGCAGAAACCCAGCAGATGGAGGCGAGGGACCCTTAACAACAGACCCAGAGGAGCTCTTCCTCAGTCAGAGTCTCCTCTTCGGATCTCAGGTTGCCTATGAGATCCACTGCTAAGGGGTTTGAATTGTGTgctaaatcaaacacaatatGTTGATGGACTTAATTAAAGACATGGAAATGAAATCACTTTGGTGCAATGATTTGAAGCATCATATTATTTTGTGGGACTCCAAAATAGGGTACAGTTAGTTGTGGCTGGGGGAAACCTGGATCACAATCAGCCTCTCAGAGATCCTCATCTAATTGATTGTATGACATTAAGCTGGATCAGAGGGGTGAACATTAATATATAGGGAAAGTAACAACTGAACCATACCTGTCTTCTCCAAATCAATCCTTTAAAGATAATTAGTGGTTAACTTTATCTGAAATAGTTTGTTTGAAAGTTCATCTCAATCCTCACAAAAGAGGCTTAGACTGGGCAACACATAGTGGCAACTAACAAATATGGATTTAACCAGTGAGTCATATTTTGTACTCTTCTttaggttttgttttgtgtgttttgtcagtgttttgtgTAAATATAATGAAGTTAATTTTCACTGTGAAGTGCAGATGTTTTGTGGACCTTGTTGCAGATCCCATTAGAAGTAGACCTAAACCGTTCCTCTTACTGAAACTACATTGTCATTACCCATATGTGTGTGGGCGTGGGTGGGTGGTTTTGTTTAAAGAGGTTCATTTCGAATGCAGCaaagtctgtttgtttttttacatttctaccATGGCATTGTATTTCTGATGTTAATATGTGTTTTTTCTGCTTGTTTGTCGCAACACTAGAACAAGGAATTAACATTTCTATTGTCTGAAATGGAATCTTTGGTGGAATTAATTCCATTAACATCAGTCTGTAACAACCACTCCAATGTgaatattgtacattttgtcTTCTacataataaaatgtattttaaaaaa
>XM_039814522.1
GATGGATTAAAACGCTTCTGGATGGCCTACATGGAGGACCTCATTGAAACGGAGCACGTCTCTTCTAAACGAAATAgtTTTGTCTCTGAAGGTCTAACATAAAACCGCCATGGTCCTCTTGCGGTTCTCCAGACTCGTCCTAATCATCGTGGCCCTCATCCCTCGACCGTCTGCGGGATGCCCCTCTGGCTGTCGCTGCTACAGCCTCACAGTGgagtgcggatctcttgggacCAAAGAAATCCCACAGGATGTCCCCTCTGTCACCGAGACCATATTCCTGCAGGACAACGCTATAGTGCAGATTCGTCTTCAGGACCTTACTCGCCTTGGCAGCCTCCATTACCTCTACCTTCAGAATAATAGCATCTCAGCTCTGGAGCCTGGGGCGTTTCTCAGCCAGGGGCAGCTGCTGGAGCTGGCCCTCAATGGCAACCTCATCCACCTGGTCACCCCAGACATGTTTCGGGGTCTGGAGCACCTCCGGATCCTGTACCTCGCCGGGAACCAGATCACTAGAGTGCAGGACTACACTTTCAGGGGACTGCAGCGTCTGCAGGAACTCCACCTGCAGGAAAACAGCATAGAGCTGCTAGCAGAGCAAGCTCTGTCTGGCTTGTCATCTCTGGCCCTGCTAGACCTCAGCAGAAATCACCTCCGTACCCTGGGAGCCTCGTCCCTCAAACCGCTCGTGAGCCTGCAAGTGCTCCGTGTCACAGAGAACCCATGGCGTTGTGATTGTGCTCTGGGCTGGCTGAGAACCTGGATCAGTGAAGACGGACAGCGTCTGTTGAGCTCTGCCGAACAGCGTCGGCTGATGTGCTCTGAACCGCCTCGCCTCTCCCACCTCAGCCTGGTGGAGGTGGCTCCCAACAGCCTGGTCTGCATCCCCCCTGTGGTGCAGCTCGAGTCCAGCCACCTGACTGTGCGACTAGGGGAGAGCCTCAGAGTCTCCTGCCAGGCTTCGGGATACCCTCAGCCTCAGGTGACCTGGAAGAAAGCCTTGCATGGCAAGGCCCAGTTATCACCTCGAGGCTTGGTTCAAGAGCTGGGACCCAATGGTGAGCTCCTCAGGCCTGGATCTGGAGGGATGGTGACAGCCTTGCCCAGCAGTGGAGGGATCAAGGTTGGGGGTGTTGGAGGAATCCAGGGACTTGTGCGTGGGACTGAGGAGGGCGGCGAGAGGGACAGCTTTGATCCAGACATGGGCAGCGGCATGCTGTTCCTCAGCAATGTGACTGTAGCGCATGCTGGGCGCTACGAGTGTGAAGCCTGGAACCCTGGTGGTGTTGCCAGAGTTACCTTTCATCTGGCTGTCAACGTGTCTTCTTCATATTCATCCCAGTTCTGGCCTCGTTTGAACATGCACTCCTTTGTTTCCTCTTCATCTAACTCCTTCTATCAGCCAGAGGTTCTGGATGTTAGCCAGGAGCTGCTCTATGAACAGGACAGCATGGACTTCTATGCTCTTGGCCCTGCTACACAGACCGCCATTGCTGTTGGCATCTCCTTGCTGGCACTCACTGCCATTCTCCTCTTGATTATGATCTACACTCGTCACCAACAGTACCGCAAAGAAGAAGGCGGCTCCTACTGTACCAGCAAGGAAGAGAGCATCCTCTATGTGAACGACTACTCAGACGGACCCACCACATTTGCGCAGCTGGAGGAGTACCGCGATGACCACGGCCACGAGATGTACGTACTCAACAGAACCCAGCCCGTCCTGGGCTCCACTTCATCCAGGTGTCCCATGATGAGTGGGTTTGTCCAGCAGAAGGGTATGAAGGAGGCCCTCCTGGACCACGAAATGGTGCAGACACTGACCAGATCAGGGGGAATGGGGCTTCGCAGAAACCCAGCAGATGGAGGCGAGGGACCCTTAACAACAGACCCAGAGGAGCTCTTCCTCAGTCAGAGTCTCCTCTTCGGATCTCAGGTTGCCTATGAGATCCACTGCTAAGGGGTTTGAATTGTGTgctaaatcaaacacaatatGTTGATGGACTTAATTAAAGACATGGAAATGAAATCACTTTGGTGCAATGATTTGAAGCATCATATTATTTTGTGGGACTCCAAAATAGGGTACAGTTAGTTGTGGCTGGGGGAAACCTGGATCACAATCAGCCTCTCAGAGATCCTCATCTAATTGATTGTATGACATTAAGCTGGATCAGAGGGGTGAACATTAATATATAGGGAAAGTAACAACTGAACCATACCTGTCTTCTCCAAATCAATCCTTTAAAGATAATTAGTGGTTAACTTTATCTGAAATAGTTTGTTTGAAAGTTCATCTCAATCCTCACAAAAGAGGCTTAGACTGGGCAACACATAGTGGCAACTAACAAATATGGATTTAACCAGTGAGTCATATTTTGTACTCTTCTttaggttttgttttgtgtgttttgtcagtgttttgtgTAAATATAATGAAGTTAATTTTCACTGTGAAGTGCAGATGTTTTGTGGACCTTGTTGCAGATCCCATTAGAAGTAGACCTAAACCGTTCCTCTTACTGAAACTACATTGTCATTACCCATATGTGTGTGGGCGTGGGTGGGTGGTTTTGTTTAAAGAGGTTCATTTCGAATGCAGCaaagtctgtttgtttttttacatttctaccATGGCATTGTATTTCTGATGTTAATATGTGTTTTTTCTGCTTGTTTGTCGCAACACTAGAACAAGGAATTAACATTTCTATTGTCTGAAATGGAATCTTTGGTGGAATTAATTCCATTAACATCAGTCTGTAACAACCACTCCAATGTgaatattgtacattttgtcTTCTacataataaaatgtattttaaaaaa

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 24-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814520.1 True 3192 mRNA 0.49 5 12075776 12089561
XM_039814521.1 False 2909 mRNA 0.50 6 12074976 12089561
XM_039814522.1 False 2832 mRNA 0.50 5 12074994 12089561

Neighbor

gene id symbol gene type direction distance location
slc6a9 slc6a9,LOC102776426 coding upstream 12733 11981139 ~ 12062243 (+)
klf17 klf2 coding upstream 108368 11963978 ~ 11966608 (+)
rnf220a rnf220,LOC103363915,LOC101079104,LOC103396675,LOC102292039,LOC102777210 coding upstream 200482 11722117 ~ 11874494 (+)
tmem53 tmem53,LOC102777675 coding upstream 534714 11538054 ~ 11540262 (+)
toe1 NA coding upstream 537789 11530838 ~ 11537187 (+)
prmt5 prmt5 coding downstream 466125 12555686 ~ 12562978 (+)
slc7a8b slc7a8 coding downstream 476433 12565994 ~ 12581212 (+)
zp3f.2 NA coding downstream 515833 12605394 ~ 12608144 (+)
LOC120568040 NA coding downstream 519596 12609157 ~ 12611158 (+)
LOC120568617 rnf212b coding downstream 522581 12612142 ~ 12616610 (+)
G113697 NA non-coding upstream 119430 11955286 ~ 11955546 (+)
LOC120568095 NA non-coding upstream 120099 11878713 ~ 11954877 (+)
G113696 NA non-coding upstream 130620 11943899 ~ 11944356 (+)
G113689 NA non-coding upstream 187307 11827403 ~ 11887669 (+)
G113681 NA non-coding upstream 352935 11708374 ~ 11722041 (+)
G113763 NA non-coding downstream 55007 12144568 ~ 12152157 (+)
G113773 NA non-coding downstream 88298 12177859 ~ 12200219 (+)
G113776 NA non-coding downstream 118165 12207726 ~ 12208026 (+)
G113777 NA non-coding downstream 118543 12208104 ~ 12208318 (+)
G113778 NA non-coding downstream 119153 12208714 ~ 12209440 (+)
pkia pkia,LOC102780447,LOC102205080 other upstream 728751 11332568 ~ 11346225 (+)
LOC120568835 NA other upstream 1188498 10885595 ~ 10886478 (+)
G113130 NA other upstream 3072408 8944477 ~ 9002568 (+)
pdca LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525 other upstream 3172129 8895927 ~ 8902847 (+)
LOC120568881 mfsd12,LOC104931866 other upstream 3249165 8812897 ~ 8825811 (+)
abhd4 abhd4 other downstream 33108 12122669 ~ 12128022 (+)
LOC120568189 nop9 other downstream 67888 12157449 ~ 12166277 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other downstream 493081 12582642 ~ 12599840 (+)
LOC120568152 LOC104963178 other downstream 811978 12901539 ~ 12907243 (+)
LOC120567760 LOC103360284,LOC108238605,LOC104963178 other downstream 821878 12911439 ~ 12919198 (+)

Expression


Co-expression Network