samd7 (samd7,LOC102781561)


Basic Information

Item Value
gene id samd7
gene name samd7,LOC102781561
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18647081 ~ 18655196 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814523.1
CTTCAGTAATTACACATCAGTTGCAAGGTGCGGCAAGCAGTTGGATGGGAGATCATCGTGATGTCAGGACAGGGAGGACTTACTGCAGGAGATAAGGCCATCTAATGGAGATGAAATGAATCGGTATTTAAAAGGTCTTTTTTAGTTAAGGCAGTTAGCTGGCAGCAGACTGTGCTCAGTAGTCAAGAAGGACAGTAGAGAAAGACAGTCTGTGAACTATCCAAAGGTTGTTCCTTCACATTTTTGACTTGTGTTTTTACCTGAATTGGGACAAAACCTGTTCCAATCTCTGCTCACTGGTTCAAGCTTGAAGtgTTCAGGAGGTCAAAGGTCGTGTGTGTCATGACCCCACGGGAGCAGCTGAGGAAGATGACAGCTCTGGGAGAGCAGGGGGCTATGGATGAGAAGCACTGGTACCGTCTGGTCAATGGCATGTCAGCTGGAGAGCTGAGGCAGAGGCAAGAGATGATAATGAGGAACCAGATGGCCATGGCTCCACAGATCCTCACTCAGGGGCAGCAGAGGTTACAGGGGGTCCCAACGCAGTTCGAACCTCGCTTCATGGAGAGAGAGCTGGTTCCCCCCTCCGAGATGGTAGCTTCCGAGGCCAGACAGATGCACATGGGACCTCACCTGGGTCCACCTCTACCTCCCCATGCCAATGTCCTGCCTGGGAGAGCTTTTCCTGGAGCAGctGGCTACGGCTTCTTGCCTTCGGAGCCCATGGAAACAGTTGCCCGGCGACAGGAGTACATTCACAAGCAAAATATAGCCAGAATGGAGATGAATGCCATCCTGCACCAGAAGGAGATGGAGAATGCCCAACAGAAGGGACTTATGGGAATTGATAATCACATGTCGTACCCATCCAACCCCATGGCATTTAGAGGTCGTCAACGCATGCCAGACGGCCAAGATGTCTTCGTCCACCGTCCCACCTTGGATGAACTACACTCCAACAGCATCCTCATGTCAGCCAGCCCTTACCCATCAATCAGTACGCTGCACAGAGAGAGGGGACGCAGGGCTGGTAGGAGACCGACCGCTCACAAGAGCGCAGAGAGTCATGTGTCCAACCTGAAGGGCCATACTGAAGATAAAAGTGTAGAGCAGAGCCCAGGAGCCACATCAGGGGAAGAGAAAGAGGTGGAGGCTAAGGGGGACATGGGAGAGGAGTGTCCCACTAGCAAGACGCACCATCAAGCAAAAATAGACTCTGACCTTGCCACAGGAAGCCGGAAGAACTACAAAGATGGGGACCCAGGCCTGCGTAAAGCCTGTGTGAACAGTCAAGATGGGTCAGATGTGGCCAACAGCAGTGCAAATGATAAAGACATATCCAGTCAATGTTCAGCTTTTCAGGAGAAATTCATGTATCCCTCTGCTGGTGGAGCGCTCACAGGCATGCCTTACATGTTCCCAGTCCCTGGAAATGGTTTCCTTCCACCTGGTCCACCCAATCTCTTTCTTAATGGTGACGAGGTGCCCGAAGACATAAGGAAGTGGACAGTGAATGATGTTTACAACTTTATTAACAGTATACCCACATGTTCAGAATATGCTCAGACGTTCAAGGATCACATGATTGACGGGGAGACGCTGCCCCTCCTGTCAGAGGAGCATCTACTGGACACACTGGGGCTCAAACTGGGACCAGCTCTTAAGATCCGCTCACAGGTGTCCAGGCGTCTGGGCAACATGTTGTACATGAGGAATCTGCCGCTCTCCACCTCCACCCTGCAGGCTACTCCAGAGAAGCCCGCTGACCGCTCATCAGAGATCGGCTCCCCTGTTAACTGCAACAGCGAGGACATGATGGCGAGTCCAAGAGACCCTGATGTCCTCAAATCTACAGAGCACCTGCACGAGACAGAAAACAATTCCCCTCCATCTGCCAGCAGTGAGACAGCCTGATCAGAACTGATAAAGTGGAAAGATGCAAATCTTACCAGGCCCAGTCTGCACTCACAGCAAAGCATGGCTCTACCTGAACCGCCACAGTGGTGGATTTGTTTACATTAAGATTAACTGGATTGAAGAGGCTTTTTTTCAGACAATTTGCTTCCTGGGTGCATGTTTAATGCATAGTTTCACTAGGCCCAGGAGTCTGCTGAATATTTGTATTTTACATAATATGTACATATTTTTTAATCAGTGGAGTGAAACTGATGTATGAGTTATGAGACCATAAGAAGgtccaatatttttttcttctcttttttatataattacATATATCTACATGTCTGGGTGTAGCTTTAaacttacttattttttaatatgCTAAGTGTCATTTCTCCAGTAGGCTGTCATGAGGACCATAGAAATATTATGGGAATGGTTTTATAATTGAACAATGAAATATCTAAGTAAGATGTTTGGATGTTTGATACCTTTTTCGTGTGTTAGATTGCAATTAAAGTGTTTTCCTACATATAA

Function

symbol description
samd7 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD7 (sterile alpha motif domain containing 7).

NR:

description
PREDICTED: sterile alpha motif domain-containing protein 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814523.1 True 2439 mRNA 0.48 9 18647081 18655196

Neighbor

gene id symbol gene type direction distance location
sec62 sec62,LOC102781860 coding downstream 666 18628974 ~ 18646415 (-)
gpr160 NA coding downstream 42291 18603307 ~ 18604790 (-)
phc3 NA coding downstream 126058 18508455 ~ 18521023 (-)
LOC120569106 NA coding downstream 340464 18300412 ~ 18306617 (-)
LOC120568294 LOC104961359,LOC103353055,LOC100705071,LOC102788160 coding downstream 402823 18236790 ~ 18244258 (-)
ackr4a LOC103360849 coding upstream 181476 18836672 ~ 18841174 (-)
si:ch211-106h4.6 plxdc2,LOC103360851 coding upstream 264003 18919199 ~ 18930384 (-)
si:ch211-106h4.4 NA coding upstream 282186 18937382 ~ 18961367 (-)
LOC120568598 NA coding upstream 308059 18963255 ~ 18966775 (-)
LOC120568757 LOC103360862,LOC102206787,LOC102301563 coding upstream 463946 19119142 ~ 19127195 (-)
G115851 LOC103353035 non-coding downstream 25861 18620833 ~ 18621220 (-)
G115848 NA non-coding downstream 31809 18614801 ~ 18615272 (-)
LOC120568822 NA non-coding downstream 111468 18534647 ~ 18535613 (-)
G115782 NA non-coding downstream 191079 18454033 ~ 18456002 (-)
G115738 NA non-coding downstream 261122 18378400 ~ 18385959 (-)
LOC120568692 NA non-coding upstream 7645 18662841 ~ 18663776 (-)
G115867 NA non-coding upstream 28410 18683606 ~ 18684244 (-)
G115868 NA non-coding upstream 34033 18689229 ~ 18691179 (-)
G115917 NA non-coding upstream 179328 18834524 ~ 18834763 (-)
LOC120568670 NA non-coding upstream 192867 18848063 ~ 18849606 (-)
sppl2 sppl2b other downstream 152593 18480670 ~ 18494488 (-)
LOC120568693 rab8a,LOC103479775,LOC101170877,LOC108232971,LOC106516875,LOC107687930,LOC102219409,LOC104931433,LOC104950312,LOC105022474 other downstream 588922 18052984 ~ 18058159 (-)
ly97.3 NA other downstream 1538177 17039800 ~ 17108904 (-)
G115406 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 other downstream 1602019 17043126 ~ 17045062 (-)
epb41l3b epb41l3,LOC102298622,LOC106534525 other downstream 1835163 16756331 ~ 16811918 (-)
LOC120568909 LOC103353029,LOC104955147,LOC101484702,LOC102780695 other upstream 47868 18703064 ~ 18720587 (-)
G115941 NA other upstream 189709 18844905 ~ 18846277 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other upstream 276778 18931974 ~ 18935491 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other upstream 566595 19221791 ~ 19222726 (-)
G116138 NA other upstream 809504 19464700 ~ 19465380 (-)

Expression


Co-expression Network