snai2 (snai2)


Basic Information

Item Value
gene id snai2
gene name snai2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21707253 ~ 21709643 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814536.1
AAGAGCGCAGCGCCGCACCATGACACTCACTGGACATAAGCATTAAGGATTTCCGTCTTCACAAAGTAAACTCGCCTCTATATTTTCCAAGaaaaaagtttgccaaaagttGTCCACTTGTTTTCCAAGATGCCACGCTCTTTTCTGGTCAAGAAACATACAAACTCAGCAAAGAAGCCAAATTATAGTGAGCTGGAGAGCCCAACAGTGTTCATCACGCCGCACATCTACAGGAGTCTTCCCCTGCCTGTCATCCCCCAGCCGGAGATCCTGAGCCCGGCAGCGTACAGCCCCATCACAGTGTGGACTACCAGCAACTTGCCGCTGTCTCCGCTCCCTAGTGACCTCTCCCCCATCTCTGGATACCCCTCATCGCTCTCCGACACATCCTCTAAAGACCATAGCGGCTCTGAAAGCCCGAGGAGTGATGAAGACGAGCAGATGCTGCCCAAGCTGACAGACCCTCACGGAGTGGACGCAGAGAAATTCCAATGTAGTTTGTGTAGCAAGTCCTACTCCACGTACTCTGGACTGCTCAAGCATAAACAGCTGCACTGCGACGCCCAAACGAGGAAATCCTTCAGTTGTAAATACTGCGAGAAGGAGTATGTGAGCCTGGGAGCTCTCAAAATGCACATCAGGACTCACACGTTGCCTTGTGTTTGCAAAATATGCGGGAAAGCTTTCTCCAGACCGTGGCTGCTCCAAGGACACATCAGGACGCACACCGgagagaagccattcTCCTGCCCTCACTGCAACAGGGCTTTTGCGGACAGGTCCAATCTCAGGGCTCATCTACAGACCCATTCGGATGTGAAAAAATACCAATGCAAGAATTGCTCCAAAACCTTCTCCAGGATGTCTCTCTTGCACAAGCATGAGGAATCTGGTTGTTGTGTAGCACACTGAACTGGGATACTTTTCCACtaccagagagaaaaaaaaaactctgttgcTTCTTTATTTTTCCAGGAGAACTGTCAGGGAATCACATCGAAGGGGGTTTGTTCCCAAATATGCcgactttttcttcttctaggaACAGTCCATTTCATTTCAGAGTGAGAAATAGCTCTGTGCTCACGTGCTTCTCGTTTCAAGCAGTGTTTCTGTGATTGCAATCGCTGTCGAGCTTTGTCATGCCGTGTACTCACCTACCTGTGCTATTCATgcactttcctgcatgtctaGAATGTTTTATATGCCTTCACAATGTTATCTGCAGTGTTTTGTACAAATGTCTCTCAATGGCTGTTATGCAGTCCTCCACTTTTCTTTATACGCACCACACAAACGATACCAAAAGGCGCATTATGAATGACAGTATACATATAACTAGAGGAATACTGAAGCCATCGTTACTTAGGGAACAAGTGCAAACTTATTTTTTAGGGTGAAAATATAACTTTTTTGCACATTAGAAACCAGTTTGCCAGCACTCAACCagcaaaatacattttctcaagTGCCTCAGTTTTATTTGGCAATGATATGTATTATTTCAACAACAGTTTCctgttatatttttatatattgaaTGTAAGCGTGACTGAGATGATTGTATATTTACAGTGAAAACTGTGATGCTGAATGATTTtgatattttcatattttcatgACACTTTAAGAAATAAAGTTTCATGACATTTTGTTATAATTTTTGGCATCCTTCAAATCGCTTTTCATCTGTGAAGCCTTTGGTGTATGATAGGTTCTTTCAGCAGGACTCAGCAGCATTCCGTGATTGTTACACGCTTTAAATGGTATAACTTGCACAAAAGTAAATGATATTTAATACAG

Function

symbol description
snai2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Is expressed in several structures, including cardiovascular system; ectoderm; mesoderm; neural crest; and splanchnocranium. Human ortholog(s) of this gene implicated in Waardenburg syndrome type 2D and piebaldism. Orthologous to human SNAI2 (snail family transcriptional repressor 2).

NR:

description
zinc finger protein SNAI2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K05706 SNAI2, SLUG; snail 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814536.1 True 1803 mRNA 0.44 3 21707253 21709643

Neighbor

gene id symbol gene type direction distance location
pcmtd1 pcmtd1 coding upstream 46745 21648818 ~ 21660508 (+)
st18 NA coding upstream 64757 21602052 ~ 21642496 (+)
rb1cc1 rb1cc1 coding upstream 112016 21581280 ~ 21595237 (+)
gbx1 gbx1 coding upstream 263128 21441760 ~ 21444125 (+)
asb10 asb10 coding upstream 267320 21434967 ~ 21439933 (+)
cebpd cebpd coding downstream 87795 21797438 ~ 21798854 (+)
klhl14 klhl14,LOC102797134 coding downstream 189925 21899568 ~ 21916897 (+)
cacna1eb NA coding downstream 212008 21921651 ~ 21982046 (+)
LOC120568173 LOC103396305,LOC101065160,LOC103364109,LOC100698908,LOC104955975 coding downstream 273371 21983014 ~ 21987482 (+)
LOC120568175 LOC104935914,LOC104955993,LOC103364110,LOC100699175,LOC102214823 coding downstream 285957 21995600 ~ 22002864 (+)
G116746 NA non-coding upstream 44783 21614100 ~ 21662470 (+)
G116723 NA non-coding upstream 206859 21454330 ~ 21500394 (+)
G116657 NA non-coding upstream 380990 21270751 ~ 21326263 (+)
G116616 NA non-coding upstream 462860 21243641 ~ 21244393 (+)
G116583 wnt9a non-coding upstream 573241 21129608 ~ 21134012 (+)
G116794 mapre2 non-coding downstream 124823 21834466 ~ 21838752 (+)
G116857 NA non-coding downstream 225876 21935519 ~ 22020278 (+)
LOC120568180 NA non-coding downstream 315470 22025113 ~ 22036950 (+)
LOC120568856 NA non-coding downstream 525176 22234819 ~ 22238505 (+)
LOC120568744 NA non-coding downstream 598124 22307767 ~ 22314947 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 791931 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 1331620 20373227 ~ 20375633 (+)
emilin2a NA other upstream 2241872 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 2655011 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 2981806 18720365 ~ 18725447 (+)
LOC120568354 NA other downstream 161310 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 898406 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 931867 22641510 ~ 22681293 (+)
kdsr kdsr,LOC102792240 other downstream 1723982 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 1883089 23592732 ~ 23685804 (+)

Expression


Co-expression Network