snap47 (snap47)


Basic Information

Item Value
gene id snap47
gene name snap47
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21053381 ~ 21059750 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814548.1
GTCGGACAGTAAATACAGCCGTGCTACTGCGTGACGTCACTTCCGTAATAAACAAGCGAGAGTGTGTGCTCAGCCCAACAAGGTGAATCAGTGTATCTCCTTTCATAATGAGCCGGGACGTCCCTATCCACAGCTGGCCCGGTTCCTATTACATCAACAGTGAGAAGCGGTGGGAAAATGGCACCCTGTCCGTCACCAGGACCATGGTGCGCTTCATCTCTAACCAGAGTAAGGAGAGTCTTGCCAGCTTTCGCCTCTCCAGGATCATGGAACTCAAGATGGAGTCGTCTAGTTTTATCTTCAGCACTCTCACAGTGCTTGAAGAGGGCAATGTGAAACACTGGTTTGGCTCCCTTAAGCCCAACAGGGTGGTGGTTTATAATGTCTTAGAGCATTTCTGGAGAGAGCGTCTTTTGTCCCCCAGCTCAGAGTCCCGGGGAGCCGAATGTAAACCCTCTAAAGGCAGAGAGCTGATCAGCCTGGTGGCAGGGGCCCAGAGAAGACTGGAGGACACCGGCAGTGTCCTCAGCCACCAAGGAGAGCAGTTTGACAATATGATGCAGGGACTGGAGAAGATTGACTCAGATCTGGGCGTGGCTGATAAACTTTTGTTAGAGCTGGAGTCTCCCTCCTGGTGGCCTTTTGGTAAACTTCCTTGGAAGACTCAGCAGGAAGCCAAGGCTCAGGACGCTGCAAgagctggagctgctgctgcttctgcagCTGGCAAAGGGTCCAGTAGAAATAAGGTGATCACAAGCATCCCAGCTGTAGTGACCAAAGGCGGGGACTCAGACTTAAAACCCGGATGCTTGTTGGTGCTGGTGTCCTCAGTGGAGGTGCGAGACACAAACTGTCAACTCCTTCACCGTTTTGAACGAAATGACATCGACGAAATCAGGGTGCACAGTCCGTATGAGATCACTGTTAGACAGCGGTTTATTGGGAAGCCAGATATATGCTACAGGTTCCTGTCTGCCAAGATGCCAGAGGCATTGTCAGTGTTAGAGATGCAGTACAAAAAGAAAGTGGAGTTCATGAATGAATACAGTGCTTTCAAAGCAACTCCAGTTTCATCTCCGTGTGATACAGAGGGTCCAAACTGGAATGAAGGTTTGCTGCAGAGGTGCCAAGACACAGAGCTCCCACTGGAGGTCCCAGCAGGAGAGCTGTCCCAGTTGCAGGTGCACGTCCTCCAGCCATCTGTCAGTCAGGCTGAGGCCCAGGAACTCAAACAGATGCTGATGCAGCTGAAGAACCTTGCCCTGGAGGCAGAGACAGAGCTGGAACGACAGGATGATGTTCTTGATGAACTAACCAGCTCCACTGACCGAGCTACCATGCACATAGAGAAGCACACCTGCCGCATGAAAAGACTGCTGTAGCTCTGACAGTCCAGCAGACGCATGCGGTCACATCGTCCTTCCTGAGAAATTCATTGTAAGCTTCCTCATTGCCCTCACAGGATTGGTACAATGTGAGAACAGCGGAAACAGCAGTAGGGACTTGCATTTACTCAAAATAGGATTTGTTTTGTATATAATCACATAAACACATGGGTTCAAGTGTCCGTGATTTCTGGGAAGTTTAGCAATGTTCGTGTAATACTAAAGATGTTCCCCAAAATCTAGGAAATTTGGAAAACGACCCCATATGTCATTTGTACAAacagcaattacgactcatatttatgtttattgttgGGCAGTGCCCTTTAGTGGCCGCAGtaattatgacgggagcaaagcaggaagtaaggtgacgaaGCATAAGAGCGGCAAACTCTgcgtaaggaggcaggttggggggggtggatgggcgACTTTCGTCCAGGAGACCGGAGTTTGTGTCCCGTTAGAAAATAAATGTCAACGtcaggttttaaaaaaatatattttttaacctAAACCATGATATTTTTCTAATCCTAACTAAgacgttttggtgcctaaacctaaccaaactgcgaccgtttTCACAACATTAACGGCCGTTAAGCTTAGGTATAAGGACGGAaaatgctcctgtgggtcgtattttCTGCCACCACTAGGGGCGCTGATTTGTCTAACACTCCTGTAGGTCGTTTAAGAGGGTGGCTTAGAGGACTAGTCGTAAATTTGCCTTTCAGATTATGATTTTGCACTTTGTGCAAATATACGTCttcattgttttatttgaaCAGTTCAATCATGTGTGACTGAGATAAATGAGCAGTCTTTATGAAGAGTAGAGTCTCCACCCTGCCCTCGCAGCCGTGGCTAGCATTGTTAGCATTACATTTGGCTTAGATCAGGGGTCAACGttctttaagccaaggaccccttaactgaaagagagacggagcagggaccccctactacatatattgtatatgattaagttgcatattacactgggcctacaataac
>XM_039814549.1
AACAGACTGTTGGGTAAACAAGACATCGGCTAGCCAGTTaacgttagcaagctagctGTCACCGCTTGGACAGCAAGAAACGGTGAATCAGTGTATCTCCTTTCATAATGAGCCGGGACGTCCCTATCCACAGCTGGCCCGGTTCCTATTACATCAACAGTGAGAAGCGGTGGGAAAATGGCACCCTGTCCGTCACCAGGACCATGGTGCGCTTCATCTCTAACCAGAGTAAGGAGAGTCTTGCCAGCTTTCGCCTCTCCAGGATCATGGAACTCAAGATGGAGTCGTCTAGTTTTATCTTCAGCACTCTCACAGTGCTTGAAGAGGGCAATGTGAAACACTGGTTTGGCTCCCTTAAGCCCAACAGGGTGGTGGTTTATAATGTCTTAGAGCATTTCTGGAGAGAGCGTCTTTTGTCCCCCAGCTCAGAGTCCCGGGGAGCCGAATGTAAACCCTCTAAAGGCAGAGAGCTGATCAGCCTGGTGGCAGGGGCCCAGAGAAGACTGGAGGACACCGGCAGTGTCCTCAGCCACCAAGGAGAGCAGTTTGACAATATGATGCAGGGACTGGAGAAGATTGACTCAGATCTGGGCGTGGCTGATAAACTTTTGTTAGAGCTGGAGTCTCCCTCCTGGTGGCCTTTTGGTAAACTTCCTTGGAAGACTCAGCAGGAAGCCAAGGCTCAGGACGCTGCAAgagctggagctgctgctgcttctgcagCTGGCAAAGGGTCCAGTAGAAATAAGGTGATCACAAGCATCCCAGCTGTAGTGACCAAAGGCGGGGACTCAGACTTAAAACCCGGATGCTTGTTGGTGCTGGTGTCCTCAGTGGAGGTGCGAGACACAAACTGTCAACTCCTTCACCGTTTTGAACGAAATGACATCGACGAAATCAGGGTGCACAGTCCGTATGAGATCACTGTTAGACAGCGGTTTATTGGGAAGCCAGATATATGCTACAGGTTCCTGTCTGCCAAGATGCCAGAGGCATTGTCAGTGTTAGAGATGCAGTACAAAAAGAAAGTGGAGTTCATGAATGAATACAGTGCTTTCAAAGCAACTCCAGTTTCATCTCCGTGTGATACAGAGGGTCCAAACTGGAATGAAGGTTTGCTGCAGAGGTGCCAAGACACAGAGCTCCCACTGGAGGTCCCAGCAGGAGAGCTGTCCCAGTTGCAGGTGCACGTCCTCCAGCCATCTGTCAGTCAGGCTGAGGCCCAGGAACTCAAACAGATGCTGATGCAGCTGAAGAACCTTGCCCTGGAGGCAGAGACAGAGCTGGAACGACAGGATGATGTTCTTGATGAACTAACCAGCTCCACTGACCGAGCTACCATGCACATAGAGAAGCACACCTGCCGCATGAAAAGACTGCTGTAGCTCTGACAGTCCAGCAGACGCATGCGGTCACATCGTCCTTCCTGAGAAATTCATTGTAAGCTTCCTCATTGCCCTCACAGGATTGGTACAATGTGAGAACAGCGGAAACAGCAGTAGGGACTTGCATTTACTCAAAATAGGATTTGTTTTGTATATAATCACATAAACACATGGGTTCAAGTGTCCGTGATTTCTGGGAAGTTTAGCAATGTTCGTGTAATACTAAAGATGTTCCCCAAAATCTAGGAAATTTGGAAAACGACCCCATATGTCATTTGTACAAacagcaattacgactcatatttatgtttattgttgGGCAGTGCCCTTTAGTGGCCGCAGtaattatgacgggagcaaagcaggaagtaaggtgacgaaGCATAAGAGCGGCAAACTCTgcgtaaggaggcaggttggggggggtggatgggcgACTTTCGTCCAGGAGACCGGAGTTTGTGTCCCGTTAGAAAATAAATGTCAACGtcaggttttaaaaaaatatattttttaacctAAACCATGATATTTTTCTAATCCTAACTAAgacgttttggtgcctaaacctaaccaaactgcgaccgtttTCACAACATTAACGGCCGTTAAGCTTAGGTATAAGGACGGAaaatgctcctgtgggtcgtattttCTGCCACCACTAGGGGCGCTGATTTGTCTAACACTCCTGTAGGTCGTTTAAGAGGGTGGCTTAGAGGACTAGTCGTAAATTTGCCTTTCAGATTATGATTTTGCACTTTGTGCAAATATACGTCttcattgttttatttgaaCAGTTCAATCATGTGTGACTGAGATAAATGAGCAGTCTTTATGAAGAGTAGAGTCTCCACCCTGCCCTCGCAGCCGTGGCTAGCATTGTTAGCATTACATTTGGCTTAGATCAGGGGTCAACGttctttaagccaaggaccccttaactgaaagagagacggagcagggaccccctactacatatattgtatatgattaagttgcatattacactgggcctacaataac
>XM_039814550.1
AAGATTAATGTGGTCTGGGACGAATAAAATTGTTGCAAGAGGAAGTGATACATGCTAAGAGGGTTTATAACATTATAATGACGCACTCGTTTTTCGGTCAGTTGGAAAGAAAGGCTCCTCCACAGCTGAAGCTACCAGTGTGAACGCCTCAGCTAAGCTCATCTGCTGCTAGATCCCTTATTACACTGAAGAAACTGTGTTTACTCTCAGGACAGAGAGATCACTCAGTGAATCAGTGTATCTCCTTTCATAATGAGCCGGGACGTCCCTATCCACAGCTGGCCCGGTTCCTATTACATCAACAGTGAGAAGCGGTGGGAAAATGGCACCCTGTCCGTCACCAGGACCATGGTGCGCTTCATCTCTAACCAGAGTAAGGAGAGTCTTGCCAGCTTTCGCCTCTCCAGGATCATGGAACTCAAGATGGAGTCGTCTAGTTTTATCTTCAGCACTCTCACAGTGCTTGAAGAGGGCAATGTGAAACACTGGTTTGGCTCCCTTAAGCCCAACAGGGTGGTGGTTTATAATGTCTTAGAGCATTTCTGGAGAGAGCGTCTTTTGTCCCCCAGCTCAGAGTCCCGGGGAGCCGAATGTAAACCCTCTAAAGGCAGAGAGCTGATCAGCCTGGTGGCAGGGGCCCAGAGAAGACTGGAGGACACCGGCAGTGTCCTCAGCCACCAAGGAGAGCAGTTTGACAATATGATGCAGGGACTGGAGAAGATTGACTCAGATCTGGGCGTGGCTGATAAACTTTTGTTAGAGCTGGAGTCTCCCTCCTGGTGGCCTTTTGGTAAACTTCCTTGGAAGACTCAGCAGGAAGCCAAGGCTCAGGACGCTGCAAgagctggagctgctgctgcttctgcagCTGGCAAAGGGTCCAGTAGAAATAAGGTGATCACAAGCATCCCAGCTGTAGTGACCAAAGGCGGGGACTCAGACTTAAAACCCGGATGCTTGTTGGTGCTGGTGTCCTCAGTGGAGGTGCGAGACACAAACTGTCAACTCCTTCACCGTTTTGAACGAAATGACATCGACGAAATCAGGGTGCACAGTCCGTATGAGATCACTGTTAGACAGCGGTTTATTGGGAAGCCAGATATATGCTACAGGTTCCTGTCTGCCAAGATGCCAGAGGCATTGTCAGTGTTAGAGATGCAGTACAAAAAGAAAGTGGAGTTCATGAATGAATACAGTGCTTTCAAAGCAACTCCAGTTTCATCTCCGTGTGATACAGAGGGTCCAAACTGGAATGAAGGTTTGCTGCAGAGGTGCCAAGACACAGAGCTCCCACTGGAGGTCCCAGCAGGAGAGCTGTCCCAGTTGCAGGTGCACGTCCTCCAGCCATCTGTCAGTCAGGCTGAGGCCCAGGAACTCAAACAGATGCTGATGCAGCTGAAGAACCTTGCCCTGGAGGCAGAGACAGAGCTGGAACGACAGGATGATGTTCTTGATGAACTAACCAGCTCCACTGACCGAGCTACCATGCACATAGAGAAGCACACCTGCCGCATGAAAAGACTGCTGTAGCTCTGACAGTCCAGCAGACGCATGCGGTCACATCGTCCTTCCTGAGAAATTCATTGTAAGCTTCCTCATTGCCCTCACAGGATTGGTACAATGTGAGAACAGCGGAAACAGCAGTAGGGACTTGCATTTACTCAAAATAGGATTTGTTTTGTATATAATCACATAAACACATGGGTTCAAGTGTCCGTGATTTCTGGGAAGTTTAGCAATGTTCGTGTAATACTAAAGATGTTCCCCAAAATCTAGGAAATTTGGAAAACGACCCCATATGTCATTTGTACAAacagcaattacgactcatatttatgtttattgttgGGCAGTGCCCTTTAGTGGCCGCAGtaattatgacgggagcaaagcaggaagtaaggtgacgaaGCATAAGAGCGGCAAACTCTgcgtaaggaggcaggttggggggggtggatgggcgACTTTCGTCCAGGAGACCGGAGTTTGTGTCCCGTTAGAAAATAAATGTCAACGtcaggttttaaaaaaatatattttttaacctAAACCATGATATTTTTCTAATCCTAACTAAgacgttttggtgcctaaacctaaccaaactgcgaccgtttTCACAACATTAACGGCCGTTAAGCTTAGGTATAAGGACGGAaaatgctcctgtgggtcgtattttCTGCCACCACTAGGGGCGCTGATTTGTCTAACACTCCTGTAGGTCGTTTAAGAGGGTGGCTTAGAGGACTAGTCGTAAATTTGCCTTTCAGATTATGATTTTGCACTTTGTGCAAATATACGTCttcattgttttatttgaaCAGTTCAATCATGTGTGACTGAGATAAATGAGCAGTCTTTATGAAGAGTAGAGTCTCCACCCTGCCCTCGCAGCCGTGGCTAGCATTGTTAGCATTACATTTGGCTTAGATCAGGGGTCAACGttctttaagccaaggaccccttaactgaaagagagacggagcagggaccccctactacatatattgtatatgattaagttgcatattacactgggcctacaataac

Function

symbol description
snap47 Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in synaptic vesicle fusion to presynaptic active zone membrane and synaptic vesicle priming. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Orthologous to human SNAP47 (synaptosome associated protein 47).

NR:

description
synaptosomal-associated protein 47-like isoform X2

GO: NA

KEGG:

id description
K18212 SNAP47; synaptosomal-associated protein 47

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814548.1 False 2411 mRNA 0.48 5 21053790 21059750
XM_039814549.1 False 2411 mRNA 0.48 5 21053381 21059750
XM_039814550.1 True 2556 mRNA 0.47 5 21053881 21059750

Neighbor

gene id symbol gene type direction distance location
iba57 iba57 coding upstream 2039 21048354 ~ 21051342 (+)
gjc2 gjc2 coding upstream 7817 21026500 ~ 21045564 (+)
LOC120567629 NA coding upstream 34056 21016902 ~ 21019325 (+)
pth1r pth1r coding upstream 69772 20935435 ~ 20983609 (+)
usp14 usp14,LOC102778130 coding upstream 260882 20782255 ~ 20792499 (+)
wnt3a wnt3a coding downstream 103970 21163720 ~ 21178831 (+)
arf1 arf1 coding downstream 132548 21192298 ~ 21195757 (+)
guk1a guk1,LOC107100458 coding downstream 140967 21200717 ~ 21208684 (+)
abcb8 abcb8,LOC103375355,LOC102789860 coding downstream 225402 21285152 ~ 21290501 (+)
cdk5 cdk5,LOC106599847 coding downstream 231956 21291706 ~ 21298333 (+)
G116538 NA non-coding upstream 22885 21021631 ~ 21030496 (+)
G116529 NA non-coding upstream 24399 20949004 ~ 21028982 (+)
G116514 NA non-coding upstream 172385 20880692 ~ 20880996 (+)
G116507 NA non-coding upstream 225146 20827876 ~ 20828235 (+)
G116465 NA non-coding upstream 354172 20696904 ~ 20699209 (+)
G116583 wnt9a non-coding downstream 69858 21129608 ~ 21134012 (+)
G116616 NA non-coding downstream 183891 21243641 ~ 21244393 (+)
G116657 NA non-coding downstream 211001 21270751 ~ 21326263 (+)
G116723 NA non-coding downstream 394580 21454330 ~ 21500394 (+)
G116746 NA non-coding downstream 554350 21614100 ~ 21662470 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 138059 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 677748 20373227 ~ 20375633 (+)
emilin2a NA other upstream 1588000 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 2001139 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 2327934 18720365 ~ 18725447 (+)
LOC120568354 NA other downstream 811203 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 1548299 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 1581760 22641510 ~ 22681293 (+)
kdsr kdsr,LOC102792240 other downstream 2373875 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 2532982 23592732 ~ 23685804 (+)

Expression


Co-expression Network