gjc2 (gjc2)


Basic Information

Item Value
gene id gjc2
gene name gjc2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21026500 ~ 21045564 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814552.1
AAATGTTGCACATGAGCATTGGGGGAGGTTGACTGTGTTGCGATTAACACGCTCCCTCAGCTGGGTGTTCATTTCAATCTGCAGTACGATATCCTCAAGTCTGAACCCTTGGATGAGGGTCACTTGCCAGAGGAGGATTTTTTTCTGCCTCTCTGTTTTTTATACTTCCTTCTTGGGCAGAAGGCTGGTGTAATAGAAACCAGACACAAGCCAGAATGTGAGGCATTCACAGCGGCGAGACCTCACTGCTTCATAGAATGGGAAAACGGAATAAATAGAAAGTCTAGTCTGATAAGTTCCATTAttgctttttcatttttgcCATTCTGGAAGTTATTAATAAGACGGAAAAGGCCAGGACATTAGGATGGAAGTGGAATTCAATGGATCAGACTGTTCAGGGGATATCTAGAGAGGGCACAGGAGACCTTCAGGATGGGAAATGCATGTACAACTTTTCCAGATTCTAGTTGAAAAGCTTGTTAGAGCAACATGAGCTGGAGCTTTCTAACTCGTCTCCTGGAAGAGATCCACAACCACTCCACCTTTGTGGGGAAAGTGTGGCTGACTGTGCTCATCATCTTCCGCATTGTGCTCACAGCGGTTGGAGGCGAGTCTATCTACTCGGACGAGCAGACCAAGTTCACCTGCAACACCAAGCAGCCAGGTTGTGACAACGTATGCTATGATGCCTTTGCCCCGCTCTCGCACGTCCGCTTCTGGGTCTTCCAGATCATCATGATCTCCACTCCTTCTATTATGTACATGGGTTACGCCATCCACAAGATAGCCCGAAGTACAGAGTTGGATCGCAGGAAGCAACTCAGGCTCCGCAAAAAgtcttctcctctctccagaTGGAGAGAAAGCCACCATCTGGAGGATGTCttagaggaggatgaagatgacgaTGCTGAGCCCATGATCTATGAGGATACACTGGAGGTGCAGGAGGCCAAGCCCGTACCAGTGAGCAGCACAAGCAAAGACCCACCAAAACATGATGGCCGCCGAAGAATTATGCAAGAAGGCCTGATGAGAATCTATGTTCTTCAGCTCATGTCGCGAGCTATTTTTGAAATCGCTTTCCTTGCAGGACAGTATCTCCTCTATGGTTTTCAAGTTAGTCCTTCATATGTATGTAACAGGGTCCCCTGTCCACACCGAGTGGACTGTTTCATCTCCAGGCCCACAGAGAAAACaatcttcctcctcatcatgTATGTGGTAAGCTGTCTTTGTCTAGTGCTAAATGTGTGTGAGATGCTTCACTTGGGAATTGGCACTTTTCGGGACACCCTTCGCATGAAGAGGAACGGCCGACGGACGTCCTACGGCTACCCGTTTTCTCGAAACATCCCAGCCTCTCCTCCGGGGTACAACCTTGTGATGAAGACAGACAAACCTAGCAGGATCCCCAACAGCCTCATTACCCACGAGCAGAACATGGCCAATGTGGCCCAGGAGCAGCAGTGCACCAGCCCAGATGAGAACATCCCTTCTGATTTGGTAAGCCTACACCGGCACCTACGGGTTGCCCAAGAACAGCTCGATATGGCCTTTCAAACATAtcaaaccaaaaacaaccaacaaACCTCCAGAACCAGCAGTCCTGTATCTGGGGGTACAATGGCAGAGCAAAATCGCGTCAATACAGTCCAGGAGAAACAAGGAGCAAGGCCGAAATCAGCTACAGAGAAGGCGGCAACCATTGTTAAAAATGGAAAGACCTCTGTCTGGATCTAGAGATAAATCTAATTTAGTAAATTAACAGTAAAAAACGGAGGTCTCCAGGACTCCATTGTGACACAGCtggaggaagtgtgtgtgtgtgtgcgtgtgattgAGAGATGGGACTTTGGACAATAACAATTGACAATTTCAATCAATCTAGCTGAAGAAGTACGGCACAAAGTTTAcgaaaatattaaaaaagacaCATGAGGAAATTATCAAATCCAGTATATCAAGATTCTTCTTTGTTACTGTAGTGCATTATTCTGTGCTTGCCGTAGCTTCTGGACATGGTTTACATGTGCTTATTTAGTTAAACATCTCTAATTCCaactaaaatgtcaaagtataaaCATACTGCTTCGAGCTATTTATCTGTTCTACCCTTGACTGCCGCTGAACTGgattaatcaaaaaaaaaaatctaactctGTAAGTGTGTGATTGTACCCTTGATCCAAATTAGAAAACGCAGTGAAAAACACCGTACAAATGCACAATGACTCATTTCTGAGGAATGATGATTATCGTTGGAAAGATGCATGTTTAATATTTGGGAAAGTATTTTTGGATGCAGAACGGATGCTGAAAGCAGAttcaatgtgaaatattttgataAAGATAATGAAACAGGGCTGTGTCACTGCAGGCTCTCCCAGTCAACATCTGATCAGTGTGATGATCTTCAGTCATTGCGTGCAAAGCCTTTATCTATTTTATATTTTCCAAAGCCTTTCAGTGTCACATTAGAAGGGAAAGAGGTAGGTGAACAGAGAATCAGATTATTTTCTAAACTAAATACTGATTTGCTGCAATCTGAAGCAGATGATGCATGCTTTACAAATGGGAACATACAGTAGAGACTACAGTAGAAACCCCATCCTTAGCTATTCAGTTAGCGCTACATTTATCTTATGTTTAGGCATGTTAGTTCTTGAAAAAGACCGTTTCAGTTTTTCTGTCATTGAAGCATAAATTGGTTTCTGAGTAATATTTAATCCTGCCTTCAATGTTGTCATAATTCAAAGTGCCTCAAACTTTTAAAGACTGTTCtcatattttattcattaagaaataaaattatttgAAAGGTCTGATTTCTTGCTTTGTAATGCATCTGCCTCTCTGCCTTGTCACACTAATAGCAATAGTGTGTTTTTGAAACTGCAAAGTGAAacgtttttattgaaatgtatttCAAGGTTGGAAGCTTGCAATAAAGTTTTATTGTTACAACAAATGTGTCTCATATGTTGTAACAAGAAAACTATCCGATCAAAGCCTAaacaaaatacataaacaatTAGTCAAATTGTAAATGACTAATTTATACAAACTGATGCTGGGATGAGATGTTGAGATTCTTCTGTTATACTAATCACAACAAATGTGTCTTAAAAATACACTCACGGGCCATTTACAGGTTGGATCCCCTTTTTGCCTTCacagtacagtgaactcattgtcatgttcaagaaaccagtTTGAGATGATTTAAGCTTTGTAACATGTTGcgttatcctgctggaagtagccattaGAAGAGGGGTAGACACTGTAATCATAAAGAGATAGACATGGTCAGTAACAATACTCACGTAGGCTGTGCTCAATTATTACTAATGGGCCCAACGTTTGCTTCCCCATTCTGATGCTTGGTTTGAACTTCAGCAGTTCGCCTGCATGTCTACATGCATAAATGCATTGAGTTTCTGCCACGTGATTGGCTGATTACATATTTTCATTAACAAGTCGTTAAACAGGTGTACCTTATGAAGTGGCCGGAGAGTGTATGTACTCTAAGAAGAATTTTTAAATGTATGGGGCAGCAAACTGTAATGAGAAGAATGGTATAAagttttatggaaaataatggGTGCAGGAGGGGCATATTGTTTTATAACCTACAGAATCACACAGCATTTTTATTCTCAAATATGGGACAATACCATAAAAAGGGTTCTTTTCCAGATTCAGCTGCAgcaataagaaaataaaaacatttaaaaagatttaCGATTTACCTTTGGAGACAAACCCATTTACGTATTCATTATGTATCCATTATTTATTGGATAAGTAGCATCAGATGTGGACTGCCACTtagaacaaacaaacagaaccTACATTGGAGCAGCTCATTGTATCAGCAACCCCCACCACCAATCCACAAAACGCAATCTTAAAAATGACTAAATTATCTCCATACTCACAAATTATCACTGTATTTCAAGAGGTACAGGCAACCTATGAATATACTGAATATATCTAAAGTTGACACAATTTCCTCAATCTCCGCGCCAATGAATCAAGTTGCACTCCACACCTGCAGCTATTTAAGAAATTGTTTAACAGAGAGAACAATCTGTGTTTGTCCAAACTTTAGCAAAAGACCTCATGTCAAATTACAATGAGcttgtttttcaaaaaataaaatattggaGAGCTGCTTCtta
>XM_039814553.1
gagtagatgacgatgtgCCTGAGCAGTGAAACGATGCCTCTGGATGCCCGCCCAGGATGACCTACCATAAAGCATAGAATGAGCTCCTGCTTTAGCCGCATGGACAGATTCTAGTTGAAAAGCTTGTTAGAGCAACATGAGCTGGAGCTTTCTAACTCGTCTCCTGGAAGAGATCCACAACCACTCCACCTTTGTGGGGAAAGTGTGGCTGACTGTGCTCATCATCTTCCGCATTGTGCTCACAGCGGTTGGAGGCGAGTCTATCTACTCGGACGAGCAGACCAAGTTCACCTGCAACACCAAGCAGCCAGGTTGTGACAACGTATGCTATGATGCCTTTGCCCCGCTCTCGCACGTCCGCTTCTGGGTCTTCCAGATCATCATGATCTCCACTCCTTCTATTATGTACATGGGTTACGCCATCCACAAGATAGCCCGAAGTACAGAGTTGGATCGCAGGAAGCAACTCAGGCTCCGCAAAAAgtcttctcctctctccagaTGGAGAGAAAGCCACCATCTGGAGGATGTCttagaggaggatgaagatgacgaTGCTGAGCCCATGATCTATGAGGATACACTGGAGGTGCAGGAGGCCAAGCCCGTACCAGTGAGCAGCACAAGCAAAGACCCACCAAAACATGATGGCCGCCGAAGAATTATGCAAGAAGGCCTGATGAGAATCTATGTTCTTCAGCTCATGTCGCGAGCTATTTTTGAAATCGCTTTCCTTGCAGGACAGTATCTCCTCTATGGTTTTCAAGTTAGTCCTTCATATGTATGTAACAGGGTCCCCTGTCCACACCGAGTGGACTGTTTCATCTCCAGGCCCACAGAGAAAACaatcttcctcctcatcatgTATGTGGTAAGCTGTCTTTGTCTAGTGCTAAATGTGTGTGAGATGCTTCACTTGGGAATTGGCACTTTTCGGGACACCCTTCGCATGAAGAGGAACGGCCGACGGACGTCCTACGGCTACCCGTTTTCTCGAAACATCCCAGCCTCTCCTCCGGGGTACAACCTTGTGATGAAGACAGACAAACCTAGCAGGATCCCCAACAGCCTCATTACCCACGAGCAGAACATGGCCAATGTGGCCCAGGAGCAGCAGTGCACCAGCCCAGATGAGAACATCCCTTCTGATTTGGTAAGCCTACACCGGCACCTACGGGTTGCCCAAGAACAGCTCGATATGGCCTTTCAAACATAtcaaaccaaaaacaaccaacaaACCTCCAGAACCAGCAGTCCTGTATCTGGGGGTACAATGGCAGAGCAAAATCGCGTCAATACAGTCCAGGAGAAACAAGGAGCAAGGCCGAAATCAGCTACAGAGAAGGCGGCAACCATTGTTAAAAATGGAAAGACCTCTGTCTGGATCTAGAGATAAATCTAATTTAGTAAATTAACAGTAAAAAACGGAGGTCTCCAGGACTCCATTGTGACACAGCtggaggaagtgtgtgtgtgtgtgcgtgtgattgAGAGATGGGACTTTGGACAATAACAATTGACAATTTCAATCAATCTAGCTGAAGAAGTACGGCACAAAGTTTAcgaaaatattaaaaaagacaCATGAGGAAATTATCAAATCCAGTATATCAAGATTCTTCTTTGTTACTGTAGTGCATTATTCTGTGCTTGCCGTAGCTTCTGGACATGGTTTACATGTGCTTATTTAGTTAAACATCTCTAATTCCaactaaaatgtcaaagtataaaCATACTGCTTCGAGCTATTTATCTGTTCTACCCTTGACTGCCGCTGAACTGgattaatcaaaaaaaaaaatctaactctGTAAGTGTGTGATTGTACCCTTGATCCAAATTAGAAAACGCAGTGAAAAACACCGTACAAATGCACAATGACTCATTTCTGAGGAATGATGATTATCGTTGGAAAGATGCATGTTTAATATTTGGGAAAGTATTTTTGGATGCAGAACGGATGCTGAAAGCAGAttcaatgtgaaatattttgataAAGATAATGAAACAGGGCTGTGTCACTGCAGGCTCTCCCAGTCAACATCTGATCAGTGTGATGATCTTCAGTCATTGCGTGCAAAGCCTTTATCTATTTTATATTTTCCAAAGCCTTTCAGTGTCACATTAGAAGGGAAAGAGGTAGGTGAACAGAGAATCAGATTATTTTCTAAACTAAATACTGATTTGCTGCAATCTGAAGCAGATGATGCATGCTTTACAAATGGGAACATACAGTAGAGACTACAGTAGAAACCCCATCCTTAGCTATTCAGTTAGCGCTACATTTATCTTATGTTTAGGCATGTTAGTTCTTGAAAAAGACCGTTTCAGTTTTTCTGTCATTGAAGCATAAATTGGTTTCTGAGTAATATTTAATCCTGCCTTCAATGTTGTCATAATTCAAAGTGCCTCAAACTTTTAAAGACTGTTCtcatattttattcattaagaaataaaattatttgAAAGGTCTGATTTCTTGCTTTGTAATGCATCTGCCTCTCTGCCTTGTCACACTAATAGCAATAGTGTGTTTTTGAAACTGCAAAGTGAAacgtttttattgaaatgtatttCAAGGTTGGAAGCTTGCAATAAAGTTTTATTGTTACAACAAATGTGTCTCATATGTTGTAACAAGAAAACTATCCGATCAAAGCCTAaacaaaatacataaacaatTAGTCAAATTGTAAATGACTAATTTATACAAACTGATGCTGGGATGAGATGTTGAGATTCTTCTGTTATACTAATCACAACAAATGTGTCTTAAAAATACACTCACGGGCCATTTACAGGTTGGATCCCCTTTTTGCCTTCacagtacagtgaactcattgtcatgttcaagaaaccagtTTGAGATGATTTAAGCTTTGTAACATGTTGcgttatcctgctggaagtagccattaGAAGAGGGGTAGACACTGTAATCATAAAGAGATAGACATGGTCAGTAACAATACTCACGTAGGCTGTGCTCAATTATTACTAATGGGCCCAACGTTTGCTTCCCCATTCTGATGCTTGGTTTGAACTTCAGCAGTTCGCCTGCATGTCTACATGCATAAATGCATTGAGTTTCTGCCACGTGATTGGCTGATTACATATTTTCATTAACAAGTCGTTAAACAGGTGTACCTTATGAAGTGGCCGGAGAGTGTATGTACTCTAAGAAGAATTTTTAAATGTATGGGGCAGCAAACTGTAATGAGAAGAATGGTATAAagttttatggaaaataatggGTGCAGGAGGGGCATATTGTTTTATAACCTACAGAATCACACAGCATTTTTATTCTCAAATATGGGACAATACCATAAAAAGGGTTCTTTTCCAGATTCAGCTGCAgcaataagaaaataaaaacatttaaaaagatttaCGATTTACCTTTGGAGACAAACCCATTTACGTATTCATTATGTATCCATTATTTATTGGATAAGTAGCATCAGATGTGGACTGCCACTtagaacaaacaaacagaaccTACATTGGAGCAGCTCATTGTATCAGCAACCCCCACCACCAATCCACAAAACGCAATCTTAAAAATGACTAAATTATCTCCATACTCACAAATTATCACTGTATTTCAAGAGGTACAGGCAACCTATGAATATACTGAATATATCTAAAGTTGACACAATTTCCTCAATCTCCGCGCCAATGAATCAAGTTGCACTCCACACCTGCAGCTATTTAAGAAATTGTTTAACAGAGAGAACAATCTGTGTTTGTCCAAACTTTAGCAAAAGACCTCATGTCAAATTACAATGAGcttgtttttcaaaaaataaaatattggaGAGCTGCTTCtta

Function

symbol description
gjc2 Predicted to enable gap junction channel activity. Predicted to be involved in cell-cell signaling. Predicted to act upstream of or within cell communication. Predicted to be located in gap junction and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of connexin complex. Is expressed in brain. Human ortholog(s) of this gene implicated in hereditary lymphedema IC; hereditary spastic paraplegia 44; hypomyelinating leukodystrophy 2; and lymphedema. Orthologous to human GJC2 (gap junction protein gamma 2).

NR:

description
gap junction gamma-1 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07616 GJC1, GJA7, CX45; gap junction gamma-1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814552.1 True 4190 mRNA 0.41 2 21039035 21045564
XM_039814553.1 False 3834 mRNA 0.41 3 21026500 21045564

Neighbor

gene id symbol gene type direction distance location
LOC120567629 NA coding upstream 7175 21016902 ~ 21019325 (+)
pth1r pth1r coding upstream 42891 20935435 ~ 20983609 (+)
usp14 usp14,LOC102778130 coding upstream 234001 20782255 ~ 20792499 (+)
rock1 rock1 coding upstream 246755 20741261 ~ 20779745 (+)
abhd3 abhd3 coding upstream 336870 20677357 ~ 20689630 (+)
iba57 iba57 coding downstream 2790 21048354 ~ 21051342 (+)
snap47 snap47 coding downstream 7817 21053381 ~ 21059750 (+)
wnt3a wnt3a coding downstream 118156 21163720 ~ 21178831 (+)
arf1 arf1 coding downstream 146734 21192298 ~ 21195757 (+)
guk1a guk1,LOC107100458 coding downstream 155153 21200717 ~ 21208684 (+)
G116514 NA non-coding upstream 145504 20880692 ~ 20880996 (+)
G116507 NA non-coding upstream 198265 20827876 ~ 20828235 (+)
G116465 NA non-coding upstream 327291 20696904 ~ 20699209 (+)
G116464 NA non-coding upstream 330027 20693420 ~ 20696473 (+)
G116463 NA non-coding upstream 333359 20692887 ~ 20693141 (+)
G116583 wnt9a non-coding downstream 84044 21129608 ~ 21134012 (+)
G116616 NA non-coding downstream 198077 21243641 ~ 21244393 (+)
G116657 NA non-coding downstream 225187 21270751 ~ 21326263 (+)
G116723 NA non-coding downstream 408766 21454330 ~ 21500394 (+)
G116746 NA non-coding downstream 568536 21614100 ~ 21662470 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 111178 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 650867 20373227 ~ 20375633 (+)
emilin2a NA other upstream 1561119 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 1974258 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 2301053 18720365 ~ 18725447 (+)
LOC120568354 NA other downstream 825389 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 1562485 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 1595946 22641510 ~ 22681293 (+)
kdsr kdsr,LOC102792240 other downstream 2388061 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 2547168 23592732 ~ 23685804 (+)

Expression


Co-expression Network