tceanc2 (tceanc2)


Basic Information

Item Value
gene id tceanc2
gene name tceanc2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17580659 ~ 17583761 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814560.1
AACATTAGTAGCTAAAATTGTGTATCTGTAGCGTTATACTGTCAGTGTCTATCCGTATCGCTGCAGCTAGCTTTATCAAACAGATTAGTTACAGTTGTGGTTAAAACTATTATTAATGGAGTATGGACGAATGACTTGAACCAAGCTAGCAGTGCGCTTAATATATTGATTTTGAAACGATAATAATAGTTAGGTAACGTTATCCAGGTAACGTAAGCTAATTTAGCTAATAGCAGTTAGCACTGGTTGTCTCTGGACCCTCCTGACCATTGTTATCGGAATACCAATTCCCTTTAACTGAACAAAACTTAACTGCATAATCACCTGTTTGTCAAAACTAACCAGCCTACTAGGTGGTTTGCTACTTTGTATCTGAAGATGGACAAGTTTGTAGTGCGGCTTCCAAAGGGGGAAACACCTAAAAAAGCGAAAAGCAACGAAAAAATTTACAAACAAACTACAATTGAATCTTTACGGAGGGTGGTTGTAATTGAGGATATAATGCGCTACAAGTCCATGTTGGATCTGCCAGAACAGAGCAAGGACAACCTGCTgactgccctgacagagctgaGCAAGAAGATCCCTTCCAGGGAGGTGCTCAAGTCCACTAAAATAGGTCACGCTGTCAACAAAATGCGCAAGCATCTGGACCCTGAGGTGAGTTCACTGGCAGCAAAGGTTTACACTGAATGGAGGACATTCATCGAGGAGAATTCCAATAAGCCATCTCTTGAAGTGCGCTCCGACAAACAATCTGAAGGACTCCGGAGCAACGCTAGAAGACTTATGTCTGAGGCCCTGGATGTCAAGGAGGATTCTGGTCTTATAGACAACATTGAGAGAGAAGTGTTTCACCAGAGCTCCCGGTTAGTCAGTAGTTCATACCGACGGACTGTTAGAGCACTGGTGTTTGCCTTCAGACACAACCCTGAGATCAGAACTCAAGTGAAGGAAAGCACAGTGTCAGTCAACCAGCTGGTTTCTAACTACAAGAAATAGCTGGTATTGAAGACCTCAGGTGGTTTCACTTGAACATTGTCAAGATTTTTTTATGCATacacattttatgtttttaattattttctttattttctgtaaaGGAGATATCAAATACTTTTACACTCTGTGGCACATCAGCAGCCTTACACTGTtttataaatacatgtaaatcgCAGTCTAGAATATGTTATATTTATTATAGATGGTAATGACAATGCCATCCCTTTGCGCTGGACTCATGAAGTTTTTTGTTCATGATCTGTTTTTATACTGTTGGTGAACATTTTTATAcaaaatatgattgaaaatatGA

Function

symbol description
tceanc2 Predicted to be located in nucleus. Orthologous to human TCEANC2 (transcription elongation factor A N-terminal and central domain containing 2).

NR:

description
transcription elongation factor A N-terminal and central domain-containing protein 2

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814560.1 True 1315 mRNA 0.40 4 17580659 17583761

Neighbor

gene id symbol gene type direction distance location
lrrc42 lrrc42 coding upstream 6186 17571577 ~ 17574473 (+)
dcaf8 dcaf8,LOC102795666 coding upstream 27729 17543670 ~ 17552930 (+)
amy2a NA coding upstream 255000 17317113 ~ 17325659 (+)
LOC120568298 LOC103353952,LOC100690840,LOC102305671 coding upstream 441113 17097270 ~ 17139546 (+)
LOC120568635 NA coding upstream 484835 17064933 ~ 17095824 (+)
LOC120567749 LOC103353067 coding downstream 204024 17787785 ~ 17967693 (+)
larp6b NA coding downstream 388294 17972055 ~ 17973556 (+)
LOC120569107 nrtn,LOC103353066 coding downstream 392215 17975976 ~ 17985540 (+)
im:7138239 LOC104950317,LOC103353072 coding downstream 452191 18035952 ~ 18041729 (+)
LOC120567609 LOC103353062,LOC104950308 coding downstream 459636 18043397 ~ 18045228 (+)
G115516 NA non-coding upstream 1070 17578910 ~ 17579589 (+)
G115513 LOC103353967,LOC104931261,LOC102192286,LOC100692446,LOC101469749 non-coding upstream 15177 17565255 ~ 17565482 (+)
G115506 NA non-coding upstream 20779 17557925 ~ 17559880 (+)
G115488 NA non-coding upstream 95848 17484406 ~ 17484811 (+)
G115446 NA non-coding upstream 355921 17217910 ~ 17224738 (+)
G115585 NA non-coding downstream 383979 17967740 ~ 17968042 (+)
G115599 ranbp3,LOC102787870 non-coding downstream 432802 18016563 ~ 18019614 (+)
G115600 NA non-coding downstream 436144 18019905 ~ 18020110 (+)
G115633 LOC102219409,LOC104931433,LOC103479775,LOC104950312,LOC105022474 non-coding downstream 469107 18052868 ~ 18058243 (+)
G115636 tpm4,LOC107383605,LOC103146061,LOC102218802,LOC103479776 non-coding downstream 476948 18060709 ~ 18065238 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other upstream 97106 17406497 ~ 17483553 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 968453 16610376 ~ 16612206 (+)
LOC120568419 LOC102779359 other upstream 1052977 16439025 ~ 16527682 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other upstream 1352108 16226307 ~ 16228551 (+)
st6galnac5a st6galnac5,LOC103370426,LOC102788813 other upstream 1659128 15865586 ~ 15921531 (+)
LOC120567767 NA other downstream 443519 18027280 ~ 18029895 (+)
G115729 NA other downstream 721388 18305149 ~ 18354344 (+)
skila skil,LOC102782637 other downstream 982872 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 1076668 18660429 ~ 18674140 (+)
LOC120568911 NA other downstream 1136604 18720365 ~ 18725447 (+)

Expression


Co-expression Network