LOC120567650 (LOC100690777,LOC102314387,LOC101469034,LOC102212652)


Basic Information

Item Value
gene id LOC120567650
gene name LOC100690777,LOC102314387,LOC101469034,LOC102212652
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12839583 ~ 12844436 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814584.1
GAGTGACTGACGGCCAGGGACAGCTGCAGCCACCAGCCAAGCAACCAACCCGTGGAGACTGTCCACAGCGATCTGAGCAGCCCTGTGTACCCTGACAGTTCTGCTCTGTGGTGGGGAGTGAGTAGGGTGCCCACGGAACCCAACCAGGACAAGGAGACAGAACAAAATGGCTGCCATGACTATAGACCCGATAGAGCAGCCTCGGATGTACCAACAGACCCTGCTTCAGGACGGACTGTGTGACCTCTTAGAGAATGACAAGTTCGTGGACTGTGTACTCAAAATTCAGGACCAGAAGTTCCCCTGCCACCGCTTGGTTTTGGCCGCCAGCAGTCCTTTCTTCAAGGCCATGTTCCTGTCTGACCTGGAGGAAAGCAAGAAGCGTGAGATTGTCCTCAAAGATGTGGAGCCAGGTGTTATGGGGATGATCTTGCGCTACTTGTACACCTCTGACATTAATCTGACAGAACAGAACGTCCAGGATATCTTCATTGTTGCTAACATGTACCAGATCCCCTCCAtcttctctgtatgtgtgtcctaCCTCCAAGAGAAGCTGGTGTTGGGAAACTGCTTGGCTATCTTCAGGCTGGGACTTCTGCTGGATTGTCCCAGGCTTACTCTGATTGCTAGAGAGTTCATCTGCGAACGCTACCACGTCGTTGTCAGGGACCCGGACTTCCTGCAGCTGGGCCCGAGCGAACTGGCCATCATCATCACCTCTGACGCCCTTAACATTGAGAGGGAGGAGTTGGTGTTTGAATCTCTGATGGACTGGGTCAGACATGACGAGACAAACCGCGTTAAGGACCTGCCAGAGCTGTTGCACTGCATCCGTTTCAGGCTCATACCTGTGAATTACTTCAAAGAGAAAGTAGAGTGTCACCAGTATCTTCGGTTCAGCCAGGACATAAAGAAGGAGCTGGATCTCGTCAGGGATGCTCACAGGGGGCGTCTCCCAAAGCCCAGGAAGCCCAGCAGTGACGAGGCAAAGAAAGGAGAAGGAAGTGAGGATGAGGACGATGAGGAGGAGGGGTACTTGCCTGGAATACTCAACAACAACCCTCGCTTTGGGATGTTTGAGCTGGACCTGATACTTATGATCAGTGTCACAGGGACTGTGGCCTATGACCCGGTAGGAAACGAATGCTTTGTGGTCTCAGAGTCCACTGAAATTCCCAAGAACCACTGCAGCCTTGTGACGAAGGAGAACCAGGTGTTTGTTGTCGGAGGACTTCTCTACAACGAGGAGGACAAAGACGAACCATTCAGCTCTTACTTCCTGCAGTTTGACCCAGTAAGTTCAGAGTGGTTAGGTATGCCGTCACAACCCAACCCTCGCTGTTTGTTCGGCCTGGCTGAAGCTGAAAACTCCATCTTTGTTGTTGGAGGAAAGGAACTCAAGGACGGCGAGCATGTCCTGGACTCAGTCATCATCTATGACAGACAGTCATTCAAATGGGGAGAGTCTGACCCTCTGCCTTATGAAGTGTATGGCCATGGAACCGTATCACACAAAGGTCTTGTCTACGTCATTGGAGGAAAGTCTAAAAGCAAGAAATGCATGAGAAGAGTCTGTGTCTACAACCCCACTAAGTTTGAGTGGAAGGACCTGGCTCCTCTGAAGACGGCCCGCTCCCTGTTTGGTATCACCGTCCACAAAGACCAGATCTTCGTAGTGACGGGGGTCACAGACGAAGGCCTCACCAGCTCTGTGGAGGTCTACAACATTGCCACCAACAACTGGTCTGAGTTCACAGAGTTCCCTCAGGAGCGCAGCTCTCTCAATCTGATCTCGATGGGAGGTTTCCTGTACGCTGTGGGGGGCTTTGCCATGATGCCCAGTGAAACCAGTGAGGAGCCCGTCCCAACAGAGATGACTGACATCTGGAGATATGATGAGTCAGACTCGTGCTGGAATGGGATTTTGCGAGAGATTAGCTATGCAGAGGGAGCCACTATTCTTTCAGTGCGTCTGAACACTCTGCGCCTCACCAAGTTATAACTGAACTGAGCTCTTAATGGTGCCATGAGCTTAATGGTGTAACAATAGCATTGAAGTGAATGATTGCACTCATGATGGACATTGGCCCAAAATTGGTTTAGGGTACAGAATGTTTCACAGTAACAACTGAATTTGGTCTCTGAAGATGAAAAAGTGTTATGAAATCAGCAACAAATATTTTTACCTTGTGTTTTacagcagggggagacagatACATGTTAAGTCTCAATGAGGCTAGATGTGAAGGACATGAGTTAGAATATCAcaccaaatgtattttataaaaagctaaaatgttgatttgtacatgttttttgttgttatattatttcattatttcaagtTTCTGTAATACCTGTTTGCTTTATTTTAAGCAGAAAT

Function

NR:

description
PREDICTED: kelch-like protein 40a

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814584.1 True 2386 mRNA 0.49 6 12839583 12844436

Neighbor

gene id symbol gene type direction distance location
LOC120568729 LOC104956573,LOC103360293 coding downstream 35643 12801906 ~ 12803940 (-)
casq1a LOC104956576 coding downstream 52905 12778340 ~ 12786678 (-)
si:rp71-1g18.1 NA coding downstream 64820 12769369 ~ 12774763 (-)
sall2 LOC104956582,LOC103360303 coding downstream 123837 12706174 ~ 12715746 (-)
mmp14b LOC103360306,LOC103396588 coding downstream 134820 12691995 ~ 12704763 (-)
hhatla hhatl,LOC108238572,LOC103360290,LOC106926958 coding upstream 1692 12846128 ~ 12854319 (-)
LOC120568154 NA coding upstream 28422 12872858 ~ 12885447 (-)
xirp1 LOC104959684 coding upstream 86962 12931398 ~ 12944718 (-)
cfap410 cunh21orf2,LOC102788189 coding upstream 267927 13112363 ~ 13115289 (-)
LOC120568264 LOC104953400 coding upstream 288496 13132932 ~ 13151478 (-)
G113945 NA non-coding downstream 46556 12789839 ~ 12793027 (-)
G113933 NA non-coding downstream 80310 12757651 ~ 12759273 (-)
LOC120568043 NA non-coding downstream 238991 12585529 ~ 12600592 (-)
G113828 NA non-coding downstream 482692 12356334 ~ 12356891 (-)
G113810 NA non-coding downstream 483502 12353843 ~ 12356081 (-)
G114129 col6a1,col6a2 non-coding upstream 108944 12953380 ~ 13167706 (-)
LOC120567923 NA non-coding upstream 178834 13023270 ~ 13039958 (-)
G114131 NA non-coding upstream 237178 13081614 ~ 13084384 (-)
G114153 LOC105007837 non-coding upstream 244250 13088686 ~ 13091316 (-)
G114130 col6a2,LOC105007837 non-coding upstream 247211 13091647 ~ 13094829 (-)
LOC120568934 LOC104956577 other downstream 70958 12760748 ~ 12768625 (-)
nedd8l LOC104931181,LOC104949953,LOC107384241,LOC103360313 other downstream 231014 12601180 ~ 12608569 (-)
G113805 NA other downstream 621316 12218062 ~ 12218267 (-)
LOC120567758 NA other downstream 1950631 10887007 ~ 10888952 (-)
brinp2 brinp2,LOC103369811 other downstream 2572505 10040686 ~ 10267078 (-)
LOC120568578 wdr48 other upstream 122030 12966466 ~ 12975328 (-)
G114152 NA other upstream 240125 13084561 ~ 13088563 (-)
dis3l2 dis3l2 other upstream 625095 13469531 ~ 13482225 (-)
tfr1a NA other upstream 1105435 13949871 ~ 13968811 (-)
LOC120568687 NA other upstream 1769177 14613613 ~ 14618224 (-)

Expression


Co-expression Network