LOC120567671 (lrrc30,LOC104932041,LOC103353948)


Basic Information

Item Value
gene id LOC120567671
gene name lrrc30,LOC104932041,LOC103353948
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17020735 ~ 17022393 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814640.1
GCTGCCCTCCGGTAGTGGGTGGGGAGCAGGGTGCTATCTGTGGACGTGAAAAGTGACAGGACCAGCTGGGGTATGAAATCCAGTAAGACAGGCAGTTGGTCTGGGAGACGCAGACCACGAGCCCCCACAGTTCTCAGTTACAGCAGCCAGCAACTCAACTCGGTTACAAAAACCTCAGCCAGGATTCAGTGTTACTACTGCCTAATATCAGGAGTTCTACAACAACCGTAGAACTGATCATGTTCTGTGTGGCTCGCTCAAGAACCCTGGAGATCAATCGACAGTCATTATCCTTAGCAATCCTCTCATTGTTGGTGATTCAGCTAATCGCATGCTAAAATCTTGTTATAGGCCATAGAATCAACAGCACTGCGAGGACCATGGGTGGGAAGCAATCTCGCGGTTTCTCCAACAAGGAGCTGAATGAGGTGAGTGTTAGTCAAAGGAGGAAGAGTGCTTTGAGAGACGAGCAGCCCAGCCTGTCCTCAGCTGCTGAAAGGATCCGCAGACACACCACGGTGCACTTTGGCTACAGCATCCTCAACCTGGCTATGCAGGCGCTTGATGAGACTCCCTCTGAGCTGTGGGAGCTCCGAGAACTGCAGAAGCTAAACTTGTCCATGAACTGCCTGTGCTCTCTGCCCCCTGCCCTGGGCGCTCTGGACAATCTGGTGATCCTAAACTTGTGGGGTAACAACCTGTCCAGCCTGCCGCCCGAGATCAGCCTCCTGAAGAAGCTACGTGTGCTCTTCGCCTGTCGTAATCGCCTGAGTGAGGTCCCAGAGGAGCTGGGTTCCTGCACCTGCCTAGAGGTGCTGAGCCTGGCAAACAACCAGATCACAGGCCTCCCCGGCAGCTTGGCAGCCATGCACAATCTCACCAAACTTAACCTGAGCCACAACCGCATCGCACACATCCCCACCTGCGTCTACAGCATGAAGGGCCTGGTTTTTCTCCACTTGGCTTGCAACCGTCTGGAGACCATTGCGGACCAGATCCAGGACTTGGTTAACCTGAAGATCCTCATTGTGGAGGGAAACAGTATCCACACATTGCCTAAGACACTGTGCTTCCTGGGGTCTTTAGAACTCCTCAATGTTGATTTCAATGACCTGCAAAATGTGCCGATGGAATTGTACCTACTGAGCAGGCTTGGAAGGTTGGCCTGCCACCCGCTGGATAAAGGACTTCATATTATCCACAACCCCCTCCTCAAGCCTATCCAGGAGGTGCTGCAAGGAGGACTCAGTGCCCTCTATAACTACCTCAAGCCCACGTGAGGGActactagtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttttttgtgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggtgggaGTGCAAGTCATAATGGGATGTTGGCACAAATCCGACCCCTGGCACGTGGTAGGCATGctgtgtgctgtgctgtgaGCCCTAGCTGCTGCCACAAATGCCTGACTGTATTGAGATACTATCAGCCAAGACAAATTACCGTTACTCagcatttatattattatttcctgttttttatgtaatgtaaaagctgggctaaaaataaacaacaagtAACTGCTG

Function

symbol description
lrrc30 Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in signal transduction. Predicted to be active in cytoplasm and intracellular membrane-bounded organelle.

NR:

description
PREDICTED: leucine-rich repeat-containing protein 30

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814640.1 True 1659 mRNA 0.51 1 17020735 17022393

Neighbor

gene id symbol gene type direction distance location
LOC120568369 ptprm,LOC102799796 coding downstream 5109 16847810 ~ 17015626 (-)
LOC120567917 tmem200c,LOC104967041 coding downstream 200701 16814692 ~ 16820034 (-)
LOC120568957 LOC103353943 coding downstream 265969 16751993 ~ 16754766 (-)
LOC120568912 apcdd1,LOC102777074 coding downstream 308471 16685480 ~ 16712264 (-)
acss2l LOC100697261 coding downstream 458572 16541130 ~ 16562163 (-)
LOC120569119 LOC101466820,LOC102797643,LOC103353954,LOC100700019 coding upstream 143498 17165891 ~ 17176411 (-)
LOC120568842 LOC103353955,LOC104931259 coding upstream 160769 17183162 ~ 17275789 (-)
LOC120567855 NA coding upstream 274662 17297055 ~ 17298924 (-)
LOC120569062 LOC103353959 coding upstream 469894 17492287 ~ 17542090 (-)
ndc1 ndc1 coding upstream 533587 17555980 ~ 17564537 (-)
LOC120569046 NA non-coding downstream 196075 16823302 ~ 16824660 (-)
G115331 NA non-coding downstream 269460 16750900 ~ 16751275 (-)
G115323 NA non-coding downstream 405810 16613028 ~ 16614925 (-)
G115309 NA non-coding downstream 460262 16543613 ~ 16560473 (-)
G115278 mtcl1 non-coding downstream 507840 16508577 ~ 16512895 (-)
G115391 NA non-coding upstream 14473 17036866 ~ 17039107 (-)
G115428 LOC103353952,LOC107089435 non-coding upstream 90323 17112716 ~ 17114744 (-)
G115429 NA non-coding upstream 97528 17119921 ~ 17121046 (-)
G115430 LOC102789304,LOC101466350,LOC102216210,LOC102305671,LOC100690840 non-coding upstream 100329 17122722 ~ 17123058 (-)
G115433 abca4,LOC108232920,LOC100690840,LOC102789304,LOC102216210,LOC101466350 non-coding upstream 111480 17133873 ~ 17135813 (-)
epb41l3b epb41l3,LOC102298622,LOC106534525 other downstream 208817 16756331 ~ 16811918 (-)
G115312 ralbp1,LOC102778314 other downstream 380923 16637108 ~ 16639812 (-)
LOC120568735 LOC103355759,LOC101465864,LOC100696456,LOC102781658,LOC102293165 other downstream 684779 16330952 ~ 16335956 (-)
mppe1 mppe1,LOC102781954 other downstream 693309 16317418 ~ 16327426 (-)
cc2d1b cc2d1b other downstream 819037 16182654 ~ 16201698 (-)
ly97.3 NA other upstream 17407 17039800 ~ 17108904 (-)
G115406 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 other upstream 20733 17043126 ~ 17045062 (-)
LOC120568693 rab8a,LOC103479775,LOC101170877,LOC108232971,LOC106516875,LOC107687930,LOC102219409,LOC104931433,LOC104950312,LOC105022474 other upstream 1030591 18052984 ~ 18058159 (-)
sppl2 sppl2b other upstream 1458277 18480670 ~ 18494488 (-)
LOC120568909 LOC103353029,LOC104955147,LOC101484702,LOC102780695 other upstream 1680671 18703064 ~ 18720587 (-)

Expression


Co-expression Network