copa (copa,LOC102794619)


Basic Information

Item Value
gene id copa
gene name copa,LOC102794619
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32815848 ~ 32827320 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814664.1
TTTGTCACTAAATTAGATTTTATCCCAGAGAGCACCATTGGTGCTATCGTGTTCAGAAACCCTTCAGCGCTGGGCCTCAGTGGTGGCACAGCTCTTGTTGGATCTTCGTTTGGATTTGTGTGTGACGCGACTTTGTGCATCTGTGCCCAGGGTCACGACCGGGGGGTCAACTGGGCCGCCTTTCACCCCACCATGCCTCTCATTGTGTCTGGAGCCGACGACCGGCAGGTCAAGATCTGGAGAATGAACGAATCCAAGGCATGGGAGCTGGATACGTGCCGCGGCCACTACAACAACGTGTCCTGTGCCGTCTTCCACCCGCGCCAGGAGCTCATCCTGTCCAACTCTGAGGACAAGAGCATCCGCGTGTGGGATATGTCCAAGAGGACCGGAGTGCAGACCTTCCGCCGGGACCACGATCGCTTCTGGGTGCTGGGGGCTCATCCAAACCTCAACCTGTTTGCTGCTGGTCATGACAGCGGCATGATTGTGTTCAAGCTGGAGCGTGAGCGTCCGGCCTACGCCGTGCACGGCAACATGCTGTACTACGTCAAGGACCGTTTCCTCCGCCAGCTGGACTTCAACAGCAGCAAGGACACTGCTGTCATGCAGCTGCGCAGTGGGTCTAAGTTTCCAGTGTTCAGCATGTCTTACAACCCTGCGGAGAACGCTGTCCTGCTCTGCACTAGGGCGACCAACCTGGAGAACAGCACCTATGACCTGTACTCTATTCCCAAAGAAAGTGACTCTCAGAACCCTGATGcACCGGAGGGGAAGAGATCCTCTGGTCTGACTGCAGTCTGGGTGGCCAGGAACAGATTTGCCGTCTTGGATCGTATGCACTCTctgctgATCAAGAACCTGAAGAATGAAATTGTGAAGAAAGTTCAGGTGCCGAGCTGCGAGGAGATCTTCTACGCCGGGACAGGGTCATTGTTGCTGCGTGATGCCGATGGCGTCACGCTGTTCGACGTGCAGCAGAAACGCTCCCTGGCCACCGTTAAGATCGCCAAGGTCAAGTACGTGGTGTGGAGTTCTGACACCAGCCACGTGGCTCTGCTGGCTAAACACGCCATCATGATCTGCAACCGTAAGCTGGAGAGTCTGTGCAACATCCATGAGAACATCAGAGTGAAGAGTGGAGCCTGGGAAGAGAGTGGAGTCTTCATCTACACCACCTCCAACCACATCAAATACGCCCTCACCTCTGGTGATCATGGCATCATCAGGACCCTGGACCTTCCCATCTATGTGACACGTGTGAGAGGAAACAGTGTTTACTGCCTGGACAGGGAGTGCAGGCCGCGCGTCCTCACCATTGACCCCACAGAGTACCGCTTCAAACTGGCCCTGGTCAACCGCAAATATGATGAGGTGCTCCACATGGTGCGTAATGCCAAGCTGGTGGGCCAGTCCATCATTGCCTACCTGCAGAAGAAGGGTTACCCCGAGGTGGCGCTGCATTTTGTCAAAGATGAGAAGACACGCTTTAGTCTGGCTCTGGAGTGTGGAAACATCGAGGTGGCTCTGGAGGCAGCCAAGGCCCTGGATGAGCGCAGCTGCTGGGAGCGTCTAGGTGAAGCAGCACTGCTGCAGGGTCACCACCAGGTTGTGGAAATGTGCTACCAGAGGACCAAGAACTTTGACAAGCTCACCTTCCTCTACCTCATCACTGGCAACTTGGCCAAGCTGCGCAAGATGATGAAGATCGCTGAGATCAGGAAGGACATGAGTGGTCACTACCAGGCAGCTCTCTACCTGGGAGATGTCAGTGAGAGGGTCCGCATCCTGAAGAACTGTGGACAGAAGTCTCTGGCTTACCTGACTGCCGCCACTCATGGGCTGGATGAAGAGGCTGAGGCGCTGAAGGAGACCTTTGACCCAGAAAAGGACACGGTGCCAGAGGTTGATCCCAATGCACAGCTGCTGCAGCCTTCTCCACCCATCAACCCTCTGGACACCAACTGGCCTCTGCTCACTGTATCAAAGGGCTTCTTTGAGGGAGCCATCACAGCCAAGGGGAAGGCCGGTCAGATGGCTGCCGACCTGGACATGGAAGCCCCAGGAGGCGAGGGCTGGGGAGACGATGCTGAGCTTCAGCTGGATGAAGatGGCTTCATGGATGCCCAGGAAGGGTTAGGGGAAGAAGGGGGAatgaaagaggagggaggaggctgGGAGGTGGAGGAAGACCTGGACCTTCCTCCAGAACTGGACATACCGACAGGTGCAGGTGGAGGAGCGGAAGATGGCTTCTTCGTCCCACCGACCAAGGGCATGAGTCCCGCACAGATGTGGTGCAACAACTCCCAGCTGCCAGTGGACCACATTCTGGCTGGCTCTTTCGAAACTGCTATGAGATTGCTCCACGACCAGGTAGGAGTTGTGAGCTTCACCCCCTACAAGGCGCTGTTCATGCAGACAATGTCCAGAGGCCGCACCTGTTACCTGGGGCTGCCTTCCCTGCCCTGCCTGCGTGGCCATCCCCAGAGAAACTGGAAGGACTGTGGCGCAAAGCAAGGACTACCTGCTGTGGGCCTGCGCCTTTCCGACCTAATCGCCCGCCTGCAGCAGTGCTACCAGCTGACTACGTCTGGGCGGTTTGAGGAAGCTGTTGAGCGCTTCAGAATCATCCTGCTGTCTGTACCGCTGCTGGTGGTTGATAACAAGCAGGAGATTGCAGAGgcTCAGCAGCTGATCACAATTTGCAGAGAGTACATCGTGGGTCTGACCATGGAAACGGAGAGGAAGAAGTTGCCTAAAGAAACACTGGAGCAGCAGAAGAGGCTGTGTGAGATGGCTGCTTATTTCACCCACTGTAATCTCCAGCCAGTCCACATGGTGCTGGTGTTGCGCACAGCTCTGAACCTCTTCTTCAAACTGCGTAACTTCAAGACAGCTGCCAGCTTTGCTCGACGCCTTCTCGAGCTGGGGCCGAAGCCAGATGTTGCACAGCAGACCCGCAAGATTCTGTCAGCCTGCGAGAAGACCCTCACAGACGCCCACCAGTTGAACTACGATCCCCACAATCCGTTTGACCTGTGCGCTGCCTCTTTTGTCCCTCTGTACCGTGGACGTCCTGTTGAGAAGTGCCCTCTGTCTGGAGCCTGCTACTGCCCTACGTACAAAGGCCAGATCTGCAGAGTCACACAGGCGACAGAGATTGGTAAGGATGTGATCGGTCTGCGTGTGAGTCCACTACAGTTTCGTTAAGAGGATATGGGAGACAAAAAGAGAAGATAAAGACAAATGCATCCACTCACTCTGTAGAAATAATATGATTATTGACACGAGAAATGAAAGCAGATCTGTTTGCTCACAGTGATGTTAAACCTCTTTATTGCTTATAACTATCTTATTCCATGTATCACCTATCCTGCAAAAAGCTATTTCTTGTAAACGCTGCTGTCATCTCTATTGTGTGGCTTTATTAGAGTCGTAAACCTAACTGTTTTTGTTTGAAACGAATAATTCAGATCGAGCAGCACTGCTATGTgtaaatgggggaaaaaaatgaaaataaaaatgcctGTCTATCAACTGAAA

Function

symbol description
copa Predicted to enable structural molecule activity. Acts upstream of or within notochord development and somite development. Predicted to be located in Golgi membrane. Predicted to be part of COPI vesicle coat. Is expressed in several structures, including axis; hatching gland; mesoderm; notochord; and pectoral fin. Orthologous to human COPA (COPI coat complex subunit alpha).

NR:

description
PREDICTED: coatomer subunit alpha

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030126 COPI vesicle coat cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K05236 COPA, RET1; coatomer subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814664.1 True 3546 mRNA 0.54 23 32815848 32827320

Neighbor

gene id symbol gene type direction distance location
ncstn ncstn coding downstream 358 32796097 ~ 32815490 (-)
LOC120568446 vangl2 coding downstream 22066 32768595 ~ 32793782 (-)
nectin4b NA coding downstream 61726 32724800 ~ 32754122 (-)
tesk2 tesk2,LOC100707995,LOC102795977,LOC102307376,LOC102211946 coding downstream 102521 32659535 ~ 32713327 (-)
si:dkeyp-68b7.12 arhgap30 coding downstream 168460 32629442 ~ 32647388 (-)
pex19 pex19 coding upstream 6196 32833516 ~ 32840858 (-)
nfatc4 nfatc4,LOC103367103 coding upstream 38626 32865946 ~ 32886957 (-)
mettl17 mettl17 coding upstream 118064 32945384 ~ 32952954 (-)
si:ch211-284o19.8 NA coding upstream 140576 32967896 ~ 32976355 (-)
LOC120568453 LOC103364630 coding upstream 354136 33181456 ~ 33191469 (-)
G119593 NA non-coding downstream 55005 32760572 ~ 32760843 (-)
G119590 NA non-coding downstream 58196 32757210 ~ 32757652 (-)
G119570 NA non-coding downstream 165872 32649689 ~ 32649976 (-)
G119567 NA non-coding downstream 221804 32593374 ~ 32594044 (-)
G119528 NA non-coding downstream 245166 32569997 ~ 32570682 (-)
LOC120568464 NA non-coding upstream 111381 32938701 ~ 32940160 (-)
G119686 NA non-coding upstream 145355 32972675 ~ 32973003 (-)
LOC120568465 NA non-coding upstream 345519 33172839 ~ 33176759 (-)
G119847 atp1b3,LOC104945299 non-coding upstream 465440 33292760 ~ 33296161 (-)
G119852 NA non-coding upstream 506904 33334224 ~ 33334542 (-)
fcer1gl NA other downstream 50637 32760969 ~ 32765211 (-)
LOC120568568 NA other downstream 441330 32364461 ~ 32374518 (-)
G119465 cadm3,LOC106600493 other downstream 589488 32216502 ~ 32226360 (-)
G119379 NA other downstream 764409 32047477 ~ 32051439 (-)
zeb1a LOC103364416,LOC100701828,LOC102292734,LOC101079552 other downstream 1240655 31469595 ~ 31575193 (-)
LOC120567697 copa,LOC103137970 other upstream 1044 32828364 ~ 32832509 (-)
G119631 LOC104961532,LOC101466547 other upstream 22399 32849719 ~ 32865274 (-)
zgc:66427 LOC103370245 other upstream 151886 32979206 ~ 32988559 (-)
LOC120568437 NA other upstream 389870 33217190 ~ 33256937 (-)
selenof selenof other upstream 594069 33421389 ~ 33433925 (-)

Expression


Co-expression Network