cldn15la (LOC104937175,LOC107383743,LOC108229378)


Basic Information

Item Value
gene id cldn15la
gene name LOC104937175,LOC107383743,LOC108229378
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4021167 ~ 4027586 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814702.1
TATCTACAGACATCACATTAACAAGAAAAAACTGACGGAGAGAGACCAGAGCCTCCAACAACCTATCCTGACTCTGACTTCACCCACCGAGGCTCTGAATTAGGACAGAAAAGACCTTGTGATCCCACCATTCCTGCCACTTTTTAGACGGCTCCTTGTTTATAGATTTGTTGGATTTCTTCTGGGTGTCTCTCTGGAAACGTTGCCACCATGTCGACGGCTGTGGAAGCGACCGGGTTCCTCATGTGTATAATCAGCTGGCTGGTCACCGGTTCTGCGCTGGCCAACGACTACTGGAAGCTTTCCACCGTGTCCGGCAGTGTCATCATCTCCCAGAGGCAGTTTGAGAACTTGTGGCACTCCTGCGCCGAGAACAGCGCCGGCATTGCTGAGTGTAGAGACTTTGAGTCGATGCTGGCCCTCCCCGCTCACATTCAGGCATGTCGGGCTCTGATGATCATCTCTCTGCTGCTCGGCCTTGCCTCCATGGTCGTGTCTATGCTCGGGTTGAAGTGCATCAAGATTGGCTCGGCCACCGACCAAACCAAGGCCAAGGTCTGTGTCACAGGAGGAATCCTGAGCATGCTCGCCGGTTTGTGCTGCATGATCGCATGTTCCTGGTATGCCTACAGAGTCGTGCAGGACTTCCACAACCCGTTCTTCGGAGGTGTGAAGTTCGAGCTGAGTACTGGTCTCTACATTGGATGGGGCGGAGCCTCTCTGGCTATACTGGGTGGAGCTTTCCTCTGCACCGCCTGTAAGAGAGCAACAGCTGGAGGCAAGAAAGCCGGTTTTTATGGAAACAAACCACAGAAGGTTTACACGGCTACAAACAAGTCTGATCCAGATTCAGCCAGAGCTTACGTCTAAAGACACATCAACAACTTTAAGGACATTGTACGGGCTTACCTTCACTTCCCGACGCCCCTAACTTTAACCTGATTCATGTAAACTGACGTAACAAAGTTGAGACCCTAAAACTAAGTCTTTTTTTTAGGAGAGCAGCTGTTTGTCCCCAGATGGGAGGACAGCTCCCACAATGTGATAATTACTGTAAACACACCATGTCTGCTGATAAATGCCTCATAACGTA

Function

NR:

description
claudin-15-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814702.1 True 1093 mRNA 0.51 5 4021167 4027586

Neighbor

gene id symbol gene type direction distance location
saga LOC100700585,LOC102198835,LOC102289605,LOC101471160,LOC103367699,LOC102794384 coding downstream 2905 4001441 ~ 4018262 (-)
proca NA coding downstream 37172 3972332 ~ 3983995 (-)
LOC120568530 NA coding downstream 131251 3883756 ~ 3889916 (-)
LOC120568324 NA coding downstream 149352 3861329 ~ 3871815 (-)
LOC120568321 NA coding downstream 260500 3749457 ~ 3760667 (-)
si:ch73-170d6.2 NA coding upstream 83160 4110746 ~ 4121351 (-)
slc39a6 slc39a6 coding upstream 118277 4145863 ~ 4168656 (-)
LOC120567835 LOC106949703,LOC103156008,LOC107087008 coding upstream 459742 4487328 ~ 4499789 (-)
LOC120567837 NA coding upstream 478136 4505722 ~ 4510614 (-)
si:dkey-7l6.3 NA coding upstream 491775 4519361 ~ 4527181 (-)
G111997 NA non-coding downstream 51949 3967994 ~ 3969218 (-)
LOC120568335 NA non-coding downstream 199977 3800195 ~ 3821190 (-)
LOC120568342 NA non-coding downstream 300045 3718266 ~ 3721122 (-)
LOC120568339 NA non-coding downstream 328704 3691144 ~ 3692463 (-)
G111961 LOC102295145 non-coding downstream 337555 3683304 ~ 3683612 (-)
G112007 NA non-coding upstream 12298 4039884 ~ 4040197 (-)
LOC120567799 NA non-coding upstream 47143 4074729 ~ 4082082 (-)
G112018 LOC102799398 non-coding upstream 62922 4090508 ~ 4138931 (-)
G112019 NA non-coding upstream 64979 4092565 ~ 4140920 (-)
G112009 NA non-coding upstream 72588 4100174 ~ 4100868 (-)
LOC120568325 NA other downstream 387768 3629565 ~ 3633399 (-)
LOC120568522 NA other downstream 435641 3564546 ~ 3585526 (-)
LOC120569104 NA other downstream 564633 3445400 ~ 3456534 (-)
LOC120568520 LOC101465856,LOC102211951,LOC102296991,LOC100703857,LOC103352978,LOC102799200 other downstream 649392 3314646 ~ 3371775 (-)
LOC120568005 NA other downstream 792020 3204287 ~ 3229147 (-)
G112043 NA other upstream 210516 4238102 ~ 4238670 (-)
G112046 NA other upstream 239952 4267538 ~ 4284083 (-)
G112233 NA other upstream 1636418 5664004 ~ 5668687 (-)
LOC120568546 NA other upstream 1696147 5723733 ~ 5746081 (-)
G112328 NA other upstream 1765577 5793163 ~ 5852447 (-)

Expression


Co-expression Network