LOC120567730 (hectd3)


Basic Information

Item Value
gene id LOC120567730
gene name hectd3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15709472 ~ 15720176 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814705.1
TCGGAAATTCCGACTTCCCAGTTCAACTGGAACGcaccaaagaaaaaaacaaacaaactggaaCGCACCATTATATCTAGCTACGGTCAAAGGTCCAATGCAAAAGTCTTTATGCGCTTCCGCGTTGTCATTAATGCGAAGAGTCCACCCAAGACTTCCACACGCATATGTGATATACGGTCCACACAAAAATACTAATCTGCTGTAATGGTGCATACCGCAGGACCAGGCAGGAAAACAAAGGCAGGACAGTGGTGTAATGCCAGCTGACTTGCTGCTGAGCTGCTGACTGTCCCCtccatcatcatcgtcatcatgtCTCTGGGCGACAACCCTCACCTGCTGCTCGGCAGGATCCGCTTCCTGAACAGGTGCATTGAATGTTTCAAGAGGAGCGAGCCGTTGCCGGAGTGTCTGTGTTATGTCCCCAATGAGGTGTGCTACAAAATCTGCAAGGATTCATCGTCCACTTCCTCCGGGTCCACCGGAGCATCTACAGCAGGATCCACTATCGGGAAAACGCTTGTCTCCGTCTTTGAGAGTCCACACCAGACTCCACACATTAAGAAGTTATGCAAATACAACATTAAACCAAAGAAAGGGACTTGTATCCGGACAACAGGGGAGGAATACTGCAACAGCCAGGGCCTGTGGGTCAAAATCAATAAGGAGCAGCTGGAGGAGCACCGTCTGGGTCAGGAGTTGGAGGAAGGCTGGATCCTGGTGTGTAAACACACAGAGGGAGGCGACAGGCTGGTGCCGGTGGAATCACCAGAGACCATCAGCAGACAACAGCAGCTCTTCGGCTACGACCACAAGCCCTGCAACAGGTGGGAGCAGGTGGTGAGTGTGGAGAATGCGCTTTACATCGGCTCCAAACCCAAAATCGCTGAGTGTGATGATGCTGCCGTCCAGAAGCTAAGGTATGTTCCCCCCAACTGGGTATATGAATGTGACAAGGACTTGGTGCACTACTTCTATGACCACATAGAGAAAGAGGATGAGATCCTGGGGAGTTTGAAGCAGTGCGTGACCAGCATCGATGTTTCTTCATGTTCGGAGGATCCCAGCGGAGTGGTGAGCCGTCTGACAGACGGCGATGTTGAAACTTTCTGGGAGAGTGACGGCAAGGATGATAAACGATGGATCCGCCTACATATGAAGAGAGGCACTGTGGTCAATAAACTGATATTGACGGTGGACTCTACAGACGACAACTACATGCCCAAGCGAATCACAGTGTttggaggagagggagacaacCTGAAGAAGCTGAGTGATGTCACCATAGATGACAACCTGATTGGAGAAGTATGTGTGCTGGAGGATATGACGTCTCACCTGCCTGTGATTGAGGTTCGGATTGAGGAATGTAGAGATGAGGGGATAGACGTCCGGATCCGAGGCTTGAAGATCAAGTCGTCATGTGaaagagacctgggtctgaACGCTGATGTTTTCTTGTCCTCTAACCTGGTGCGCTACCCCCGTCTGCAGGGCAACACCCCAGACGTCCTGTACCGCAGAGCACTAATCATCCAGAGGTTCATCTGTCTCCTGGACAGTGTGCTCCCACACTTGGTACCGGCCTGGGACTATAGTTTGGGCACCTTCAACCAGATCAAAAGCATAAAGCAGTTCCTGCTGCTGTCCAAACGCCGCTCAGCCCTCATCACACAGTGCCTGAAGGACTCTGAGACCAATAAGCCAAACTTCATGCCCCGACTCTACATCAACAGACGTCTGGCCATGGAGCACAGAGACAACCCCTCTCTGGACACCAGCTGCAAGAACGCGGTGTTCAATCAGGTGTATGAAGGCCTCAAGCCAACGGACAAATTTGAGAAAACTTTGGATTATAGATGGCCCGCTCGGTATGACCAGTGGTGGGAATGTAAGTTCATTGCAGAGGGAATCATTGACCAGGGCGGTGGATTTCGGGACAGCCTGGCTGACATGTCTGAGGAGCTCTGCCCCAGCTCAGCTGAGTGTCCCATGCCTCTGCCATTCTTCAGCCGTACATCCAACCAGGGCTCCTTAGAGGCCAGAGACTACTACGTCCCCAATCCGTCCTGTAAAGAGTTCCACAAGTATGAGTGGATAGGTCAGCTCATGGGAGCTGCTCTCAGAGGAAAAGACTTCTTGGTCTTGGCTCTGCCTGGGCTGGTGTGGAAGCAGCTGACTGGGGAGGCTGTCAGCTGGAGTAAAGATTTCCCAGCTGTAGACTCTGTGCTGGTAAACCTGCTGGAGGCCATAGAGAACATGGACCAGGAGACGTATGAGTTCAGGTTTGGTGACGAGCTGGTGTATACCAGCCTGCTGAGCGACAGCCAGATGGTGGAGCTCGTCCCCGGCGGCAGTAACGTGGCTGTTCGTTACGAGGACCGCAGCGAGTTTGTCCGGCTGGTGCAGAAGGCTCGGCTAGAGGAGAGCAGGCAGCAGATTGCAGCCATGCAGGCGGGGCTGCTAAAGGTGGTTCCTCAGGCGGTGCTGGACCTGCTCACCTGGCAGGAAGTAGAGAAGAAAGTGTGTGGAGACCCTGAGATCACTGTGGAGGCCCTGAAACGACTCACACGCTATGAGGACCTGGAACAAAGTGACATTAGAGTGCAAAACTTATGGGAAGCACTGACGAACTTCACCAATGAGGATCGCAGCAGGTTTCTTAGGTTTGTAACTGGTAGAAGTCGTCTACCTGCGCCTATCTACGTCTTTCCCGACAAACAAGGCTCTGAAACGACTGATGCACTTCCACAGTCCTCCACATGTTCCAGCACTCTTTATTTGCCCAACTACCCAAGTGCAAAGGTTTGTGAGGAGAAGCTACGTTATGCTGCTTACAACTGTGTGGCCATCGACACCGACATGAGCCCCTGGGAAGAGTGATCTCTTTGCTGTTTCCCTGAACAATCTACAAATCATTGTTGAATGCAGAGAAATCTTGCCATTTTAATCACCATATCTACAACTGCCAATTAATCCTCCCTTTATATAATAAAGAACTCATTGTAAACATG
>XM_039814706.1
TCGGAAATTCCGACTTCCCAGTTCAACTGGAACGcaccaaagaaaaaaacaaacaaactggaaCGCACCATTATATCTAGCTACGGTCAAAGGTCCAATGCAAAAGTCTTTATGCGCTTCCGCGTTGTCATTAATGCGAAGAGTCCACCCAAGACTTCCACACGCATATGTGATATACGGTCCACACAAAAATACTAATCTGCTGTAATGGTGCATACCGCAGGACCAGGCAGGAAAACAAAGGCAGGACAGTGGTGTAATGCCAGCTGACTTGCTGCTGAGCTGCTGACTGTCCCCtccatcatcatcgtcatcatgtCTCTGGGCGACAACCCTCACCTGCTGCTCGGCAGGATCCGCTTCCTGAACAGGTGCATTGAATGTTTCAAGAGGAGCGAGCCGTTGCCGGAGTGTCTGTGTTATGTCCCCAATGAGGTGTGCTACAAAATCTGCAAGGATTCATCGTCCACTTCCTCCGGGTCCACCGGAGCATCTACAGCAGGATCCACTATCGGGAAAACGCTTGTCTCCGTCTTTGAGAGTCCACACCAGACTCCACACATTAAGAAGTTATGCAAATACAACATTAAACCAAAGAAAGGGACTTGTATCCGGACAACAGGGGAGGAATACTGCAACAGCCAGGGCCTGTGGGTCAAAATCAATAAGGAGCAGCTGGAGGAGCACCGTCTGGGTCAGGAGTTGGAGGAAGGCTGGATCCTGGTGTGTAAACACACAGAGGGAGGCGACAGGCTGGTGCCGGTGGAATCACCAGAGACCATCAGCAGACAACAGCAGCTCTTCGGCTACGACCACAAGCCCTGCAACAGGTGGGAGCAGGTGGTGAGTGTGGAGAATGCGCTTTACATCGGCTCCAAACCCAAAATCGCTGAGTGTGATGATGCTGCCGTCCAGAAGCTAAGGTATGTTCCCCCCAACTGGGTATATGAATGTGACAAGGACTTGGTGCACTACTTCTATGACCACATAGAGAAAGAGGATGAGATCCTGGGGAGTTTGAAGCAGTGCGTGACCAGCATCGATGTTTCTTCATGTTCGGATCCCAGCGGAGTGGTGAGCCGTCTGACAGACGGCGATGTTGAAACTTTCTGGGAGAGTGACGGCAAGGATGATAAACGATGGATCCGCCTACATATGAAGAGAGGCACTGTGGTCAATAAACTGATATTGACGGTGGACTCTACAGACGACAACTACATGCCCAAGCGAATCACAGTGTttggaggagagggagacaacCTGAAGAAGCTGAGTGATGTCACCATAGATGACAACCTGATTGGAGAAGTATGTGTGCTGGAGGATATGACGTCTCACCTGCCTGTGATTGAGGTTCGGATTGAGGAATGTAGAGATGAGGGGATAGACGTCCGGATCCGAGGCTTGAAGATCAAGTCGTCATGTGaaagagacctgggtctgaACGCTGATGTTTTCTTGTCCTCTAACCTGGTGCGCTACCCCCGTCTGCAGGGCAACACCCCAGACGTCCTGTACCGCAGAGCACTAATCATCCAGAGGTTCATCTGTCTCCTGGACAGTGTGCTCCCACACTTGGTACCGGCCTGGGACTATAGTTTGGGCACCTTCAACCAGATCAAAAGCATAAAGCAGTTCCTGCTGCTGTCCAAACGCCGCTCAGCCCTCATCACACAGTGCCTGAAGGACTCTGAGACCAATAAGCCAAACTTCATGCCCCGACTCTACATCAACAGACGTCTGGCCATGGAGCACAGAGACAACCCCTCTCTGGACACCAGCTGCAAGAACGCGGTGTTCAATCAGGTGTATGAAGGCCTCAAGCCAACGGACAAATTTGAGAAAACTTTGGATTATAGATGGCCCGCTCGGTATGACCAGTGGTGGGAATGTAAGTTCATTGCAGAGGGAATCATTGACCAGGGCGGTGGATTTCGGGACAGCCTGGCTGACATGTCTGAGGAGCTCTGCCCCAGCTCAGCTGAGTGTCCCATGCCTCTGCCATTCTTCAGCCGTACATCCAACCAGGGCTCCTTAGAGGCCAGAGACTACTACGTCCCCAATCCGTCCTGTAAAGAGTTCCACAAGTATGAGTGGATAGGTCAGCTCATGGGAGCTGCTCTCAGAGGAAAAGACTTCTTGGTCTTGGCTCTGCCTGGGCTGGTGTGGAAGCAGCTGACTGGGGAGGCTGTCAGCTGGAGTAAAGATTTCCCAGCTGTAGACTCTGTGCTGGTAAACCTGCTGGAGGCCATAGAGAACATGGACCAGGAGACGTATGAGTTCAGGTTTGGTGACGAGCTGGTGTATACCAGCCTGCTGAGCGACAGCCAGATGGTGGAGCTCGTCCCCGGCGGCAGTAACGTGGCTGTTCGTTACGAGGACCGCAGCGAGTTTGTCCGGCTGGTGCAGAAGGCTCGGCTAGAGGAGAGCAGGCAGCAGATTGCAGCCATGCAGGCGGGGCTGCTAAAGGTGGTTCCTCAGGCGGTGCTGGACCTGCTCACCTGGCAGGAAGTAGAGAAGAAAGTGTGTGGAGACCCTGAGATCACTGTGGAGGCCCTGAAACGACTCACACGCTATGAGGACCTGGAACAAAGTGACATTAGAGTGCAAAACTTATGGGAAGCACTGACGAACTTCACCAATGAGGATCGCAGCAGGTTTCTTAGGTTTGTAACTGGTAGAAGTCGTCTACCTGCGCCTATCTACGTCTTTCCCGACAAACAAGGCTCTGAAACGACTGATGCACTTCCACAGTCCTCCACATGTTCCAGCACTCTTTATTTGCCCAACTACCCAAGTGCAAAGGTTTGTGAGGAGAAGCTACGTTATGCTGCTTACAACTGTGTGGCCATCGACACCGACATGAGCCCCTGGGAAGAGTGATCTCTTTGCTGTTTCCCTGAACAATCTACAAATCATTGTTGAATGCAGAGAAATCTTGCCATTTTAATCACCATATCTACAACTGCCAATTAATCCTCCCTTTATATAATAAAGAACTCATTGTAAACATG

Function

symbol description
hectd3 Predicted to enable ubiquitin-protein transferase activity. Is expressed in hatching gland; notochord; and polster. Orthologous to human HECTD3 (HECT domain E3 ubiquitin protein ligase 3).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase HECTD3

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K12233 HECTD3; E3 ubiquitin-protein ligase HECTD3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814705.1 True 3017 mRNA 0.51 20 15709472 15720176
XM_039814706.1 False 3014 mRNA 0.51 20 15709472 15720176

Neighbor

gene id symbol gene type direction distance location
LOC120567729 hectd3 coding upstream 737 15698266 ~ 15708735 (+)
best4 best4 coding upstream 12292 15692655 ~ 15697180 (+)
si:ch211-106k21.5 NA coding upstream 19028 15678394 ~ 15690444 (+)
LOC120568632 LOC107602512,LOC107688509,LOC107714866,LOC107674362,LOC104964691,LOC102306697 coding upstream 34778 15629931 ~ 15674694 (+)
zgc:153913 LOC104957208 coding upstream 85010 15622054 ~ 15624462 (+)
LOC120567732 rps8,LOC104932872 coding downstream 762 15720938 ~ 15724388 (+)
LOC120569147 NA coding downstream 1963 15722139 ~ 15722248 (+)
LOC120569146 NA coding downstream 2331 15722507 ~ 15722573 (+)
LOC120569144 NA coding downstream 2959 15723135 ~ 15723203 (+)
LOC120569145 NA coding downstream 3553 15723729 ~ 15723797 (+)
G114998 NA non-coding upstream 32129 15677093 ~ 15677343 (+)
G114991 NA non-coding upstream 84149 15625102 ~ 15625323 (+)
G114944 NA non-coding upstream 159552 15549129 ~ 15549920 (+)
G114909 ripk2 non-coding upstream 254097 15444478 ~ 15455375 (+)
G114905 NA non-coding upstream 271719 15436104 ~ 15437753 (+)
LOC120568726 NA non-coding downstream 26001 15746177 ~ 15759108 (+)
G115055 NA non-coding downstream 122978 15843154 ~ 15848292 (+)
G115095 NA non-coding downstream 373834 16094010 ~ 16097398 (+)
LOC120568625 NA non-coding downstream 383542 16103718 ~ 16107792 (+)
G115103 NA non-coding downstream 415989 16136165 ~ 16138828 (+)
slc35a3b LOC103357859,LOC104957008,LOC101481522,LOC102792347 other upstream 140978 15554471 ~ 15568494 (+)
zgc:153115 klf13,LOC104948390,LOC103358333,LOC101073550,LOC105030379,LOC106568757,LOC107752329 other upstream 180703 15520782 ~ 15528769 (+)
asip2b agrp2,LOC105941385,LOC102299529,LOC102795060,LOC103358555 other upstream 231010 15472702 ~ 15478462 (+)
LOC120568540 LOC108238308,LOC100706341,LOC103359463,LOC106530177,LOC102798013,LOC101474556,LOC102303803 other upstream 340692 15338557 ~ 15368780 (+)
G114789 NA other upstream 552273 15151796 ~ 15157199 (+)
st6galnac3 st6galnac3 other downstream 44507 15764683 ~ 15843094 (+)
st6galnac5a st6galnac5,LOC103370426,LOC102788813 other downstream 145410 15865586 ~ 15921531 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other downstream 506131 16226307 ~ 16228551 (+)
LOC120568419 LOC102779359 other downstream 718849 16439025 ~ 16527682 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other downstream 890200 16610376 ~ 16612206 (+)

Expression


Co-expression Network