neurod6b (neurod6,LOC102793566,LOC102311402,LOC101472195)


Basic Information

Item Value
gene id neurod6b
gene name neurod6,LOC102793566,LOC102311402,LOC101472195
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19769289 ~ 19772164 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814766.1
gaggaggagaaaggaggaaGAGCACAACACAGCAAGGCAGAGAAAAGAGTGTGCACGgtttaagctttttcctttAATTTGTGGTTTGCAAGAGAAGAAGCTGCAGCGCAGATTCAGAAGAGCTATTTGGGAACATGCAAGGTGCACGCTGATCAGAGGAAATATGTTGACACTGCCATTTGAGGAACCTCATATGATGTGTGAGCCGCGGTTTGGTGCCAATTATCCCCGTGAAAACTTACCTGAGAGCCTGGAGAAGGAGCGACAACACGATCCAGACAGGTCCAATTCAGACATGAGGGAGGCCGAGGACGACATCTCCGACAGAGATGAGGACGAAAGGGAGGGCGATCACGATGACAACGGGCTTCCTAAAAAGCGCGGCCCGCGAAAAAAGAGGCCCGGTAAGGAGATGGACCGGTCCAAAGTACGGCGCCATGAAGCCAACGCCCGAGAGCGCACCCGGATGCACAGCTTGAACGACGCGTTGGAGAGCCTGCGCAAAGTTGTGCCGTGCtactcaaaaacacaaaaactgtcCAAGATTGAGACCCTTAGACTGGCTAAAAATTACATCTGGGCCCTGTCAGAGACTCTGAGCGCTGGGAAGAGACCGGACCTCCTCGCTTTCGTACAGACTTTGTGCAAAGGATTATCTCAGCCAACAACCAACTTGGTGGCCGGTTGTTTGCAGCTGAACGCGAGAAATTTCCTTACAGACCACAACGGGGAGGTCATGTTCTCTGGCAGATCGCCCTACGATGCCATGTACTCGTACCCCGGCACAGACATGAACACGCCCCCAGGTCACAGCGGGAGCAACCTGGACAGCAGCGCCAAGCCGTTCAGACACTACAGCTACAGCGGCGCGTATGAGCCCTACTACGAGAACCCGTCCCCAGAGGGCGGGAGTCCGCATTTCGACGGCCAGCTGAGCCCCCCGATGAACTTCAACGGGATTTTCTCTCTAAAACACGACGATCCGCCAGACTACGGCAAAAGCAGCCACTATGGCATGCGCTACTGCAGTGCGCCAGGGCGCACGGCTCTTGCGCACAATTCCATGTACCGGGTCTCCCCAGAGGGCCGTTTCCCCTACGATCTGCACGTCCGCAGCCAGTCCTTCCAAGCACAAGGGGAAGTTAATGGCTCTTTCCACAATTAATCAATCAGCTGGACAAAGTTCAAGTTTCAGAAGCAATGCAATTTCCCCCGCAGATGTCGAGAGTGGAACGAAATGTACTCCAGACACGCTGATgcaaagcaaaaatgccaattTCAGCATTATCTGTTGAATGTTCAGTCTTGTTTTTCTTTGAAACATGGTAAAAGTCTGCAAATGAGATATGAGGATTTCACTTGATCTCAAGTCTTGTGTCGATATAAGGCAGAAAAAAGACACAAGAACGCTTTTGCTTTGAAATGATTTCAATCTGAAGGCAGATTCTCTGATTCATTTAAAGAAAACTAAGATTGAATGGCTTACTGCCACATATTTGTTTCCATTGGAAAACCACAAATGTAGAGTAGGCCTAATTCGATAAAGATGCAGGGTTCGAGTAAATGAcatatatgatatgatatttgTTTGTTAATGGCTGTACTGCAGATGTCGGTCGTGATATGGGTTATTTAAAGCTGATATTAATATGATTGAATTTTCTGCTTATTTAATTAGATCACAGTAGTCAGTAAAATGATTTACCTGTCGAAATAAAATCAGCTAAATGAAACAACCGGGGAAGAAGAATCTAAAGCATTTCACCTCATCAGGGAAGTTTGCTGAGCTATGATTGGAGTTCAGAGATTCAGTCTGTTAGCAATAAAGGTCAATTGAGCTATGCAAGGCAGCCAAATGCAATCTTTGCTTATAAAAAAACGTGTCTATTTCCTCCCACAAGGCGTTTCTCATAATCTAATATCTAATTAAAATGATGACAATTACACAAAATTGGTTAAAGAAAAAAGCCAGTTTGGAATTGTGCACGTGTTTAGGagcctgatgatgatgatgtcatacAGGAAGTTTTGGGGAAACTAAATGCATTTGTAGTTGGAGTAAATAGTGTGGTAACGAGGTgaatataaattattattgtatttatttatttaagcttATTTATTATAATTCCGTCAATTTTAATGTGGATAATATATCATTAAGAAATATTGTAAAAATCAATGGTGTTACCTTTTTATGTGAATTCCCATACATTAACAGTTTGTTTATGTTGCATTGTTGTATATTTCACTGCAGCTGAAAGGAAAATCATTTTGTGTGAGGTGAACACAATGTTTCAAAATTATATAAATGCGAACATGCCTTAAAAAAGAGATGATGACCATCAATATGCAACGAAATGACAGTTTTGGATAGTTTGATGTGAACTTTTTACACTTCCTTGTTCCTGCTGAAGAGCAGCTGTAATGCACTTCATGTATTTCTGCACAATGTTGGTGACTGTACTCATAAATTCTGTTGCTTTTGTAACTTTAA

Function

symbol description
neurod6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within dentate gyrus development. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: neurogenic differentiation factor 6-B-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09080 NEUROD6, ATOH2, MATH2; neurogenic differentiation factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814766.1 True 2497 mRNA 0.44 2 19769289 19772164

Neighbor

gene id symbol gene type direction distance location
pde1cb pde1c,LOC108232872,LOC103135697,LOC103479836,LOC102794047,LOC100712431,LOC103361422 coding upstream 17656 19648419 ~ 19751633 (+)
LOC120568742 vim coding upstream 122765 19639508 ~ 19646524 (+)
LOC120568599 LOC107383795 coding upstream 153435 19603644 ~ 19615854 (+)
rgs20 rgs20,LOC103361426,LOC100710193,LOC102795665,LOC101473767,LOC107098286,LOC104917737 coding upstream 176725 19579117 ~ 19592564 (+)
trnar-ucu_13 NA coding upstream 252344 19516853 ~ 19516945 (+)
LOC120567771 NA coding downstream 30827 19802991 ~ 19826972 (+)
LOC120567775 adcyap1r1,LOC103396405,LOC102193585,LOC100710985,LOC104917732 coding downstream 82824 19854988 ~ 19882428 (+)
eef1da LOC106532782,LOC101466496,LOC102194655,LOC102290633,LOC103361414 coding downstream 149151 19921315 ~ 19947470 (+)
zgc:113531 LOC104917724,LOC100692768,LOC101464837,LOC104948902,LOC102196942 coding downstream 248184 20020348 ~ 20024640 (+)
kiss1ra gpr54,LOC102788056,LOC101463985,LOC104942405 coding downstream 464640 20236804 ~ 20252137 (+)
G116200 NA non-coding upstream 14841 19752493 ~ 19754448 (+)
G116175 NA non-coding upstream 130877 19638170 ~ 19638412 (+)
G116174 NA non-coding upstream 131166 19637878 ~ 19638123 (+)
G116168 NA non-coding upstream 141670 19627254 ~ 19627619 (+)
LOC120568776 NA non-coding upstream 145105 19619229 ~ 19624184 (+)
G116204 NA non-coding downstream 60959 19833123 ~ 19834373 (+)
LOC120567786 NA non-coding downstream 64650 19836814 ~ 19840804 (+)
G116214 NA non-coding downstream 100469 19872633 ~ 19873049 (+)
G116215 NA non-coding downstream 112431 19884595 ~ 19885699 (+)
G116216 NA non-coding downstream 130079 19902243 ~ 19902819 (+)
emilin2a NA other upstream 303908 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 717047 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 1043842 18720365 ~ 18725447 (+)
LOC120568691 NA other upstream 1095149 18660429 ~ 18674140 (+)
skila skil,LOC102782637 other upstream 1167026 18566633 ~ 18602263 (+)
LOC120567833 gbg5 other downstream 601063 20373227 ~ 20375633 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other downstream 1110453 20882617 ~ 20915322 (+)
LOC120568354 NA other downstream 2098789 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 2835885 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 2869346 22641510 ~ 22681293 (+)

Expression


Co-expression Network